Came054058.1
Basic Information
- Insect
- Chrysolina americana
- Gene Symbol
- clz9
- Assembly
- GCA_958502065.1
- Location
- OY293419.1:16879815-16881893[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 2.8e-07 6.7e-05 24.5 0.0 1 37 8 44 8 48 0.90
Sequence Information
- Coding Sequence
- ATGGcaccgaaaaaaaattacaaacctGAGCAAATGACTCGAGCAATAGAAGCTGTAAAACGGGAAGAGAGTGTGGGAGCAGCTGCAGTAAGATACGGTGTACCACGAATTACTTTGAGGAATAAAGTTATCGACAAGAGCCCACTTGAATGCAGTATGGGACCACCAACTATTTTAACACCTAAAGAAGAAGATATTTTAGTGAGGTGGTTGATAACACTAAGTGACAGACATTTCCCAATTGATAAAGAGCAGCTATTGGATAGCGTTCAGcgaattattattaaatgtaATAGAGAAAATCCATTTAAGAATAATAGACCAAGGAAAAAATGGTATCAGTCCTTTTTGAAGCGTCATCAAGAAATTGCCCTAAGAACCTCTCAAAATTTAACGGTATCTAGAGATAATGTGACGGAGAAAGACATAAAAGTTTGGTTTAACGAAATAAATGAATACCTGGaagaaaacaatttgatgacaatTTTAGATAATCCAAAAAGGATATATAATGCAGACGAAAGTGCGTTTTTCTTGCAACCTCGGGTAGGACGTGTACTTACCAAAAAAGGGAATAAAAATGTGTATTCCACATCAGGTAATGAGAAAGAAAATCTAACTGTACTTGTTACAGCAAATGCAGCTGGACAATTACCACCACCCATGATTGTATTCTCGTATGAACGTATTCCTTCTATTATTTCAAATAGCATTCCAGAAACATGGAGAATAGGACGATCAGATACTGGGTGGATGTGTGGAAGTACCTTCTATGAGTATGTCACAAACATTTTTCACCCGTGGTTGGTCAAAAATAACATAACTCTTCCAATTATCTTCTTCATAGATGGCCATGGTTCCCACTTAACTGCACATTTATCAAACTTTTGTTCTACCCACGGTATAGAAGTAATAGCACTATACCCAAATAGTACCCATATTTTACAGCCTATGGATATAGCAGTATTTAGACCTTTGAAGTTGGAATGGAAGAATCAAGTTACCAAGTGGAAAATGGATCACTTAggtgaacaattgaaaaaagaaaattttgctCCTGTTTTCAAGTTAGCATTACAATCTATAACCAAAGATTGCATTAAAAATGGATTCAAAGCTGGTGGTTTGTGTCCTTTTGGGCCACAgcatattgacttcacaaaagTGAAGGTCCAAAGTCGTAATGTCAAAGAAAGAGAAGAAACTTGTTTGTCAAGGCACAAAGAGTTCTtggaaaaattggaaactgagataattgaaattttcacgcaagaAAAACTTGATTGTTTCAATGGATATTTGAAccctaatgaaaaaaatccacaAAATTTACCAGATGAAGACAAGTCTTTGTATACAATATgggcaaaatataaaaatgtatcaCAAGGTCATATAAATACGGAGACCTCACGAGAAGCTACTAAAATGCAATGTACAATCTCGGAATCTGATACCCTTCAACAAGCTTCTAATGATATGGGTGACAATAGTGCAAAAGCATCTGCGTCATCCTCAGCTGCCAACAGTGAATCTGAATGCAAAACTCCATTGAAAAAGATTTGCAATGTTCCTTTGTCATCTCAGTCACCGTCAACTACTATCAACATACCTGAACCGAGAActccattaaaaaattattccaatgtTCCCTCGACATCTCAATCACTGTCGGTAACTATCAATATACCTGCGTTGCAATCTTCATGCaacaatatttccaatattccTTCGACATCATGTGATGGCCTAATAATTCCTTCACCTTTcaagaatatattattttggCCAGAACCAGAAAAAAAGAAACGTCGAATTTCTAAAGGAAAGGTACCATCAGCCATAACAAGTAAAGCTTGGAGAGAGTACAGTGAGAAAAaggttctgaagaaaaagaagatAGAAGAGGACAAGGAGAATCGAAGAAAAGAAAGAGAGGAGAAAAGAAGATTGAAGGAACAAAATTTAGcagataagaagaaaaaatcacaaataaatacatcttcAGAGAGTTCCTCAGATATAGAGTATGCAGAGAGTAGTAAAAGGAAGAAAACGATGATGAATATGAAGAGTTAG
- Protein Sequence
- MAPKKNYKPEQMTRAIEAVKREESVGAAAVRYGVPRITLRNKVIDKSPLECSMGPPTILTPKEEDILVRWLITLSDRHFPIDKEQLLDSVQRIIIKCNRENPFKNNRPRKKWYQSFLKRHQEIALRTSQNLTVSRDNVTEKDIKVWFNEINEYLEENNLMTILDNPKRIYNADESAFFLQPRVGRVLTKKGNKNVYSTSGNEKENLTVLVTANAAGQLPPPMIVFSYERIPSIISNSIPETWRIGRSDTGWMCGSTFYEYVTNIFHPWLVKNNITLPIIFFIDGHGSHLTAHLSNFCSTHGIEVIALYPNSTHILQPMDIAVFRPLKLEWKNQVTKWKMDHLGEQLKKENFAPVFKLALQSITKDCIKNGFKAGGLCPFGPQHIDFTKVKVQSRNVKEREETCLSRHKEFLEKLETEIIEIFTQEKLDCFNGYLNPNEKNPQNLPDEDKSLYTIWAKYKNVSQGHINTETSREATKMQCTISESDTLQQASNDMGDNSAKASASSSAANSESECKTPLKKICNVPLSSQSPSTTINIPEPRTPLKNYSNVPSTSQSLSVTINIPALQSSCNNISNIPSTSCDGLIIPSPFKNILFWPEPEKKKRRISKGKVPSAITSKAWREYSEKKVLKKKKIEEDKENRRKEREEKRRLKEQNLADKKKKSQINTSSESSSDIEYAESSKRKKTMMNMKS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00646871;
- 90% Identity
- -
- 80% Identity
- -