Came054276.1
Basic Information
- Insect
- Chrysolina americana
- Gene Symbol
- PGBD4
- Assembly
- GCA_958502065.1
- Location
- OY293419.1:17818167-17824325[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 6.3e-07 0.00015 23.3 0.0 3 38 39 73 37 79 0.92
Sequence Information
- Coding Sequence
- ATGAAGTTTCACattgttggcaacactgctTTCATGTGTCACAGAAGTGTTCTACAAATATGCCCCGAACATAAATGTGTGGCTGTTGGTACCAAGCATAAACAATACTCATCAGATATTTTGAAGAGGGCTATTGGGGAGCTCCGAAACGGCCTCAGCTATAGAAAATGTTCGGAAAAATACGATATACCTACTACTGTTCTACACAGgcattccaaaaatattcaagtcaAGAAGAAAGGCGGTCAAACGTCACTTAGTGAAGATGAAGAAGCGGTTTTAGTTGATCGGCACAAAACTTGTAGAAGACGTGTACCGAAGTTCAAGGACTACACACCTGGCCGTGATTGGGTCTATTCCTTCTTAGGACGTCACACAGAATCCTTATCATCGAGAATGTGCCAGAATATCAAAAGATCGCGAGCCGCAGTCTCTCTCGATATAATAAATGCATATTTGGACGAACTCGAACTACAACTGAAGGACGTTTCTGCAAGTCACATCATAAACTATGATGAAACTAATCTTTGTGATGATCCAGGAAAAAAGAAGCTGATTTTCAGACGTGGCTGTAAATATCCAGAAAGGATCCTGAATTCCTCAAAGGCGTCCACGTCAGTCATGTTTGCCGCTACCGGAGAAGGCAAAATATTGCCACCTTACGTGGTATATAAAGCCCAACATTTGTATGAGAGCTGGCGGGAAAGAGGTCCAAAAAACTCTAGGTACAATAGAACCAAGTCTGGTTGGTTCGACACCTTCTGTTTATCTGATTGGATTTTTGGCTTTTGGAACAAAATACCTGATTGGGGACAACtgtgtaatgaaaaaaatataaaattcatatttctccCTAGTAACCTTACCCAGCCACTTGACGTGGCATTTTTCAGGCCTATGAAAATGGCTTGGCGTAAAATATTGGAAGAGTGGAAGAAGGGATTAGGAAGAGGTGAGGCTTCTGTACCCAAAGATAGGTTTCCTGGTCTACTGAAACAATTGTGTGATTCTCTTAAAGAAGATAACGTTGTATCTGGTTCCAGAAAGTGTGGAATTGTGCCGTTAGATCGCAACAAGGTTCTTAATATGTTGCCGAAAACGGATTCAATAGCTAGCGATAATAGCAGGAATGAAAGTGTAGCACCTGTACCCGTAGAAGCCATCGACGAAACTTTTAAAGAGTTGTTAGCAACCTTACGACAATTCGATGGTGTAAAGCAAAAGAAAAAACGAACAAAGATGAGGGTTATACCAGGAAAAAGTGTCGAAGTGAAAGATTTAGAGGAATCAGTAGTAGTtgAAGATAAAGACTTTTCACCTGAAGATGAAAATTCCGATTCCAATTCAGAAGAAGAAATTGTGGAAACCCAGCAAATATCAGATTATTCATCTGATGATGATATCCCTCTTGCCCGTTTAGTGAGACATAAGAAGTGGGAACCTGTTTCTGGCCCCAGAAATAACCTTGACTTTACAATTCCATATACCGGCGTTCATCCTGACGTTGTCGAGAAGTTGAGAGGAAAAAAACCCATCGATTATTTCAAGCACTTCattgatgatgaaataatatCACTCCTGGTTAGGGAGACAAATAGATTTGCAGCACGTCAATTTGCCGCTGCCAGATCAAGAATCTGTAAATGGATCGACACTGATGATATCGAAATGCAGAAGTTCTTAGGAATAATTCTTTGGATGGGTCTGATTCAATTTCCCCAATTGAGAGATTATTGGTCGACAAACATGCTTTATGGAAATgCCCAAATTCAAAGAATCCACATTCCTGAAGAACAGATCTGCATCGACGAGAGAAATGTACCATTTCGTGAACGTATACATTTCCGGCAATATATTCCCAACAAACACCATAAATATGGCATAAAGGTTTTCAAACTCTGTGTTAGCGGAGATTATACTTGGTCTTTCAAGGTTTATACCGGCAAAGAGAGAGCAGATGATATATCAGTCGCCGAAAAAGTTATCAGCGAATTGATGGATGGCCTCTTCGATAGCGGTAGAACTCTGTATACTGATAACTGGTATACCAGTATAGCTCTTTCGAAGAGAATGTTACAACGGAAGACACATTTGGTTGGCACCCTGAGACTAAACAGGAAAAATAATCCTCCTAATGTGGTGAAGACAAAACTGAGAAGAGGTCAAGTTGTAGCTGAGCAAAATGAGGACGAAACTGTTGTCCTGAAGTGGAAGGATAAGAGGGATGTCGCCATGCTGAGCACAAAACATGACGATTCCATGGTTTATATTTCACGAAGAGGGAAATAA
- Protein Sequence
- MKFHIVGNTAFMCHRSVLQICPEHKCVAVGTKHKQYSSDILKRAIGELRNGLSYRKCSEKYDIPTTVLHRHSKNIQVKKKGGQTSLSEDEEAVLVDRHKTCRRRVPKFKDYTPGRDWVYSFLGRHTESLSSRMCQNIKRSRAAVSLDIINAYLDELELQLKDVSASHIINYDETNLCDDPGKKKLIFRRGCKYPERILNSSKASTSVMFAATGEGKILPPYVVYKAQHLYESWRERGPKNSRYNRTKSGWFDTFCLSDWIFGFWNKIPDWGQLCNEKNIKFIFLPSNLTQPLDVAFFRPMKMAWRKILEEWKKGLGRGEASVPKDRFPGLLKQLCDSLKEDNVVSGSRKCGIVPLDRNKVLNMLPKTDSIASDNSRNESVAPVPVEAIDETFKELLATLRQFDGVKQKKKRTKMRVIPGKSVEVKDLEESVVVEDKDFSPEDENSDSNSEEEIVETQQISDYSSDDDIPLARLVRHKKWEPVSGPRNNLDFTIPYTGVHPDVVEKLRGKKPIDYFKHFIDDEIISLLVRETNRFAARQFAAARSRICKWIDTDDIEMQKFLGIILWMGLIQFPQLRDYWSTNMLYGNAQIQRIHIPEEQICIDERNVPFRERIHFRQYIPNKHHKYGIKVFKLCVSGDYTWSFKVYTGKERADDISVAEKVISELMDGLFDSGRTLYTDNWYTSIALSKRMLQRKTHLVGTLRLNRKNNPPNVVKTKLRRGQVVAEQNEDETVVLKWKDKRDVAMLSTKHDDSMVYISRRGK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -