Came007929.1
Basic Information
- Insect
- Chrysolina americana
- Gene Symbol
- -
- Assembly
- GCA_958502065.1
- Location
- OY293411.1:3840877-3841506[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 6e-09 1.4e-06 29.8 0.0 1 43 16 58 16 60 0.86
Sequence Information
- Coding Sequence
- ATGCCTCACAAAAAATATGTTCGCAAAACAAATCGCTCTGCTTGGTCAGAGGAAGACATGAAGAGGGCTATGAAGGCGGTCGACCAGAAGACACATTCTATTAGGAAGGCAGCAAGGTTACAAGGAATACCATATGCTACGTTGTGCGACAGATTTAATAACAGATATCCCAGTAAGAAGATAAAATTGGGAAGGAAGCCTGTGTTGAATGAAAACCAAGAGACGCAACTAGCAAATCACattttgaaattgtcaaaaatgttctACGGTTTGACGCCAAGTAAAATCAAACATCTTGCATTCGAATATGCCGTTGCGAATCAGTTACGACATAATTTCAATACTGAGAAGAAATCGTGCGGTAAAGATTGGTTGCGTGGATTTTTAGCGCGACACCCGCAAATTTCTTTAAGACATCCTGAAGCTACGAGTCTCAATCGGGTAATCGCATTCAATCGGAATGATGTGAACCTTTTTTACGATAATTTAGAACTGgtctatgaaaaatacaaatttcctGCAAGACGCATATATAACGTGGATGAGACTGGAATAAGTGGAGTACATAAACCACCCAGAATTTTGGCGGAGAAGGGAAGAAAACAGGTGGGTGCTATTACAAGTGGATAA
- Protein Sequence
- MPHKKYVRKTNRSAWSEEDMKRAMKAVDQKTHSIRKAARLQGIPYATLCDRFNNRYPSKKIKLGRKPVLNENQETQLANHILKLSKMFYGLTPSKIKHLAFEYAVANQLRHNFNTEKKSCGKDWLRGFLARHPQISLRHPEATSLNRVIAFNRNDVNLFYDNLELVYEKYKFPARRIYNVDETGISGVHKPPRILAEKGRKQVGAITSG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01105697; iTF_00327940; iTF_01242322;
- 90% Identity
- -
- 80% Identity
- -