Came055411.1
Basic Information
- Insect
- Chrysolina americana
- Gene Symbol
- -
- Assembly
- GCA_958502065.1
- Location
- OY293419.1:23231547-23237681[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1e-06 0.00024 22.7 0.0 2 45 14 56 13 56 0.91 2 2 0.00046 0.11 14.2 0.0 3 40 71 108 69 112 0.84
Sequence Information
- Coding Sequence
- ATGAAACCCAAAGGGAAAGCCAAATTCCACCACTACAGTGAAAATGCCTTAAAGAACGCAGTCGAAGCTGTCAAAAATGGAGGTAAATTAAGAGAAATATGTAGACAATACGGGGTTCCAAAGTCCACGGTACATGACCGTATTAAAGGGAAAaattcaaaCATGCGCAACTATAAAAGGAAAAGTCTGCGGGGCAGCACCTATTCGAAAGAGAGCCTAGAACGAGCAGTGAATGAAATAAAGGCATCAGTACTTACCTACAGGATGGTCAGTAGAATATATCACATTCCTGAAACTACATTACAAGACCATGTTAAAGGAAAAAAGGGTGTAAACAGTTCTAGTTATGGTCGTCATACTGATCTATCTCCAGATGTAGAAGCACATCTTGCAAGAAGCCTTTGCTGTATGGAAAAGTGGGGATTTGGTCTTTCTAGAACGGAAGTTTTAGACCTTGTAGTAATTTATGGTTTAAAAGAAGGGGAGAGAGATCTCTACGAGGATGTGGTCTCTTTTTTCCGTACGAAGCTTGCTATTGATGTAAAGGAGACTGATATCAGAGATGTGTTTAGACTGGGCCAAATTGATGAAGTGAAAAACCGTCCCGTTGTGATTGAGTTTACAAGAAATAAACTACGGTTTGAAGCGCTGACTGGTTCTAAGAAGTTGAAAAGAACTGGATTGTTCATAGCACCGGACTACATACAAGAGGATTATGTGAAGAAACAATATCTAGTGGCCCAGCAGAAAATCGCTAGAGAAAGTGGTCATATAGCGAAGATCAGAGGAAATAACCTGATAGTGGACAACATCAGTTACTCATTCGAAGATCTACAGACCAGGTTAGTGAAAGGTGATTCGTGTGAATCAGTGGGAAGTGAAAATTCGAAGAAAAGAGCTGCTGAAGATATACtagaaaaagagaaaaataaaccATTCAAAGCAAaTAGTGATTTAGAACAGTTATGGGATAATATCAAAATCGCGAAACTGAATATTGCTGTTGGTGTTAAATATAAGCCCCCGGACTATTCAGTGAGCGAATTTATTGCTAAGTTAGAAAATGATCTTACAATGTTGATACCCAAGTATGACGATATTATTATTCTGGGCGACTTCAACATTGATATGTTGAAAATATCGTCTACGTCCTATTCTAGGATGAACAATTTTTTAGGAGGAATGGGGTTAGTTCAGCTTATCGATAAACCAACAAGAATCACAATTACTTCTATCACACAAATTGATCTGATCATAACAACAGAACATGGGGACATTAAGAAAAATGTTGAGgAAGCTCTGCCATCCACCACAGTTACCATGTATGAGGATATAGCTACCACTCAATCCAACTCATCGGAACAAATTCTTCGAATTCACCACCCAAACACCGAGCCGGTACCAATCACATGA
- Protein Sequence
- MKPKGKAKFHHYSENALKNAVEAVKNGGKLREICRQYGVPKSTVHDRIKGKNSNMRNYKRKSLRGSTYSKESLERAVNEIKASVLTYRMVSRIYHIPETTLQDHVKGKKGVNSSSYGRHTDLSPDVEAHLARSLCCMEKWGFGLSRTEVLDLVVIYGLKEGERDLYEDVVSFFRTKLAIDVKETDIRDVFRLGQIDEVKNRPVVIEFTRNKLRFEALTGSKKLKRTGLFIAPDYIQEDYVKKQYLVAQQKIARESGHIAKIRGNNLIVDNISYSFEDLQTRLVKGDSCESVGSENSKKRAAEDILEKEKNKPFKANSDLEQLWDNIKIAKLNIAVGVKYKPPDYSVSEFIAKLENDLTMLIPKYDDIIILGDFNIDMLKISSTSYSRMNNFLGGMGLVQLIDKPTRITITSITQIDLIITTEHGDIKKNVEEALPSTTVTMYEDIATTQSNSSEQILRIHHPNTEPVPIT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -