Came016071.1
Basic Information
- Insect
- Chrysolina americana
- Gene Symbol
- -
- Assembly
- GCA_958502065.1
- Location
- OY293412.1:20757615-20758358[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.8e-11 4.4e-09 37.9 0.0 4 43 20 59 17 60 0.94 2 2 7.8 1.9e+03 0.6 0.0 24 35 158 169 141 171 0.84
Sequence Information
- Coding Sequence
- ATGCCGAACAAATACATGAGAAAATCTGTACATACACGCGGTATCTGGTCACAAAATGATTTGTCAGAAGCAATCAAGAGTGTTGTTGATGGAAATAACTCTGTCCGACGAGCTTCTATTGTATTCAACATACCACGTAAAACCTTGGAGCGTCGAATTAAAACGAAAAACTCTCAAAAAGGAAACATGGGCCCTAGCTGCGTCTTTGGAAGAGAAAATGAAGATCGACTATCGCGACGTATTATATCAATGCAAAAACGTGGCTTTCCGTTAACCAGAGACGACCTCAGGACCATTGCTTACCATTTCGCTcaacaactaaaaataaaacacaaatTTAATAATGAAACCGAAAAAGCTGGTTACGACTGGCTTGCTCTGTTTCTGAGCTGTCATCCGGAAATTAGTATTCGTAAATCGGAAGGTGTCTCCATAGCTAGATCAAAGGCAATGAATCGAAAAGAAGTAGGAGACTATTTTGATTTGCCTGAAACGACTATGGAGCAACACTCTCTGTTTGATAAGCCAGCAAACATATTTAATATCGATGAAACGGGCCTCCAGCTCAACAGTAGACCAGGAGAAGTACTTGCAAAAAAGGGGTCCAAAGCTGTGTCAGCAGTAACGTCCACGGAAAGGGGAGAAACAATTAGTTTGGTGGTTTGTTGCAACGCTGAGGGTAATTTCTTACCGCCTGTTATTATCATGAagggcaaaaataaaaaaacaggaaTGGGAAGATAA
- Protein Sequence
- MPNKYMRKSVHTRGIWSQNDLSEAIKSVVDGNNSVRRASIVFNIPRKTLERRIKTKNSQKGNMGPSCVFGRENEDRLSRRIISMQKRGFPLTRDDLRTIAYHFAQQLKIKHKFNNETEKAGYDWLALFLSCHPEISIRKSEGVSIARSKAMNRKEVGDYFDLPETTMEQHSLFDKPANIFNIDETGLQLNSRPGEVLAKKGSKAVSAVTSTERGETISLVVCCNAEGNFLPPVIIMKGKNKKTGMGR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01515489; iTF_00327908; iTF_00330471; iTF_00735410; iTF_00327806; iTF_00327798; iTF_00327800; iTF_00327801; iTF_00329114; iTF_00735415; iTF_01515525; iTF_00910455; iTF_00327840;
- 90% Identity
- iTF_00327840;
- 80% Identity
- -