Basic Information

Gene Symbol
JARID2
Assembly
GCA_958502065.1
Location
OY293419.1:58982565-59006831[-]

Transcription Factor Domain

TF Family
ARID
Domain
ARID domain
PFAM
PF01388
TF Group
Helix-turn-helix
Description
This domain is know as ARID for AT-Rich Interaction Domain [2], and also known as the BRIGHT domain [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 2 0.075 7.8e+02 2.5 0.1 23 57 350 384 334 407 0.74
2 2 3.9e-21 4e-17 64.3 0.0 6 89 2260 2341 2256 2341 0.93

Sequence Information

Coding Sequence
ATGaagcgaaaaagaaaaagtggTTGCCCTTCTCCTATACTCGAAGATAGCCCAAAAAGGGTGAAAGTGCATGCCCAGCGAAAATTTGCGCAGGgctcaaatgtcaacagtcctATGATAACGCCGATAAGAGAGCTAGAATCAGATAGTCCGAAAATTGATGTTTTGCCTGAACCAGTAGAATTACTCCCTATAAAAAGGCCAAATACCGAGGATTTTCTCACATTTCTGTGTTTTCGAGGAACACCCATCCTTCCCACCAacctaaattttttcaatacagcTTCCATAGTCGATACGAATGGCCAAGTTCATGAAATCAAAAGCGAATCTTCACCCAAAAACGGACCCATTGATATTGCAAAATGTGGAACATCTTCTGAAAAACCGTTCATTGCATTTGGAGTCAGGAAAAGGGCAGATCCAATTGTTATTAGTCGACAAATGGATAGAAAAAGACGCCATGCTCTTGCAATACAGGCCCTTCGTAGAAAATATCAAGAACAGAAGATGGCTAAAATCAGGGCTATAACAATAagtaaattatctgaaaaagttACAAACAAGACGTTAGTCAGGACAAATACCATATCAAAAACAGAAACCGTCACGAAAAAGAGTAATACTCTACAAAAAACTAAGGTAATTGCAACAAAACATGTCAAAGTTACCACACAGACATTGAAGACAACCTTGAGGCCTAAAATCAAACCAAAGATGTGTTTGAGGAGTTTTAGGGGGAGATTTGTACAGAAGGAACTCCCATTCAGAAAAAAGGTTGCAAGAGAAAATGTCCTTATTAGAAAGCCCATGGAAAAAAAAGTCAAGTCCAAGAACAAGTCTGAGAAAACTGAATTTTCTGAAGACGAGGAACCTATAATAAAGCCTGCCAAGCTAGCTAAATCTCAGCCAGTTTTTAAAGTGAATAGAAAAAGTCGTACGGAAGCTGGGATGAAAaccagTCCCCGTGTTACCAGATCTGTCATAGATAAAAATGTGGACATTAGAAGGAAACAAATTAAAAAGAGGATACTTATGACTAATCCAAATACTATTATAAAACCAAGATCTCTCAGATTGACGACTTTGAAAAAGACCGTTCAGTCGCAAAAGAAATGCAAATCTGTCATTGCCAAACAGAAGGTCAAGGCTACCCAAAAACAGCATACTATTAGTTTCAATAAGAAATTAGACAAAGTAATTTCGGTTGAAAGCACCGTTGAGGAATCAAATGTGAAAAAATCTGAGAATACTCGACGGAATgtcagaaatattgaaaagagaGACTCTAAACAGAGTGATAAGAAAAGTCCgaataaaaatgaagattttggtAAAACATCAGCTATTAAGAaagattacaaaaaaataactgattacaaaaaagaaacgaataAATTTGTTGACAAAGATAAAAAACATACCAATAAAATCGATATCAGGAAAGAATTAACTAAGTCAACTGATATCAAAAAAGACGATAATAAAACTGTTGAAATTAAAAAGAGTACTAGAATTTCGAATATAGTTCAGAAAAAAGAggtaaatattgataaaaatgccGATAAAAACATCGTTAAATCGCCGGATTTAAAAAAGGAATCTGGAAGTGACAAACTCGTTAATAAGTCTGTAGAAGCAAGAAAGGGGTCAACCATTTCTATAGATAAAGAAAAGAGACAATCTTCCAAAAAAGAAAATACTGCAGAGATTCAGGAAGCTGTGTCCAAGAAAGTGAGAGGTAAATCTCAAGAACAGGCAAAGACTTGCACCAAATCAGCTGATAGTACTCTGAAAAAAGATGTCAAAGCAACAGATTCTAAAAAATTAAAGGCTTCATCTTCGTCTgaagaaactataaaaaaagGGAAGGATTCAAGTCGTTCTGATATTGACGATGATTGtgaaacaactgaaaatattaatgaaagcAAAGATTTAAAAAGAACAAAAACCAACCCAGTAGAAAATGAACAAGTAGTAAAACTGAGGGAACCTTTGGCCTCAACAAATgagattatttcaaaaaaattgttgaataataaaattaatgataCGGTGACACataaaaagttatctaaaacgAAATCGACTTTTGAGGACACTGATGACAATACTCTAGAAGAAATTAAAAGAAAAGGTAGTAGAACAATCTCAAACCCATCTGGAAAATCCTCAGGAACTAACAAACAAATTCCAGATATAAAATCTCGTATTGGTGCTGAAAGTGACAAAGAAGTGAAAGAAACAATAGATACAAATAAACTAAAGAATAAATCCTTGAATGATcaacaaaatcaaatcaaagatGTCGATAgtgattctgaaaatgaattgaatattaAACTCGGCAAGATGACTGCTAATAAAAAGAATAAATCATTATTAGAAAATAAGAATGATGTTTCAAAAGAGTTAGTAAACAAAGGGGGAAAAACTAAATCAGCTTTAAATAAACTCCAAGACCAAATAAAGGTAACTAGCaacaaaaaagaagaagaaataaaaaaagaatcgAGTAAGGTAACTAAAAGGGGgggaaataaattattaacaaaaagtAAAAGTCCAGTTGATGTTGCTCATATTGAAGATGacatggaaataaaaaaaatatctggtgATGAGAACTTAAGTAAATCTCCCTTAGAAGTACATGAAGATCAAATTATAGTTCCTACTATTGAAAGAGGCGATAAagacaaaataataatagtgaatAAAATGGGGGATGCTGCTGAACTTGAACCCAAAATAAAGACTCTGAATAAAAATGCCAAATTATCAGAAGATACTATCAGTATGGATGTTGAACTGAAAAATGAATCTAAAAAGAAAGCAAATGTAGCGTTATCAGTAACAGATGTTGAAGATGAAATAAAATCAGTTGCGAGTAAGATTGAAAATCCAAGTACAGATAAAAAGGATAGTAAATTGATGGAATGCAGTAGTGATGagattgaaactgaaaaaaataaaaaaatattgccaAATAAAAGTCAAAAAGATGAAGGTTCTAACAGTCCTATGAAACCTGACATAAAAACTAATGATATCAAGGAAGTCAAAAATACTTCAACAAATAAAGTGAATGCAAAGGGAAAATCATTGTTGAGCAAACTTCAAGATGAAGTAAAGGATTCTAATAGTGAATCTGAAGATGAATGTACAAAGAAAGTGGAAAACAAATGCAAGGCATCTAAGCATCAAACAACTACAGAAGTTACCAATATTGTGAAGCCCACTCCTAATAAACAGGAAATGACGAGTAAATTGATGGATGTTGCAGATGAAAATAAACCTAAAGGTACAACTATTGATTCTGAGaacgaaaagaaaaatgaaGTCCAAGTTGCAGTCAAcaaattaataacaaaaaaatcgtcaaataataaacaacagAAAGAAGTGAAAGATcctaaaaaagaaaatgatagtAGATCTATTGATATCAAGGATGAAGTTGAAGAATCTTTAAATGAAGTGAAAGGTAAATCTTTGACAACTAAATATGAAGGCACAGTTATGAATGCTGATATTGGCTTAGAAATTGAGAGCAAAACAGTTGTGGTTTCAAAAGATGTGAAGACAGCACTAAGTCATGTAGTGACAAGCAATACAGATGAAGCACCAGTTGCTGATGTTGATAAAAGAGATGTTCTGTTGAAAACTAAAGGAAACAATGATAAGAATAGGACTGAATGTATGAAGATGTCAAACCTTGGTAAATCAAAACAAGAAAGTCCTGTAGAAATGATGATTGCGGTAGAGAACTCAGTTGACTTCAAATCTGAAGATGAATtagatattattttgaaaaaagaaataagtAAGAAATCGGTTACTTTAACTGATATGAGCGACTGTTTGAAAAAAACTACTGCTGGTAAAGAGGATGGAATTAAAAAACGATCTACTAAAACTAACATGAAGAAAGTGAAAAGCAAATCAATAAAAGAAGACGTGGAAGATCTGATCAGTATCACaaataaaatgaagaaattggAAACTGGATCAAAAGAAGACAGTATGGCAGAAAATGACAAACTCGCTGGTAAAGTTGATAAGAAACGTCtcgaaaataaagttgatggtgTAAACGAAACCTTTGGAAAAATTTGCAAATCAGTAAAGGCAAATGAACAAGAATTTTCAACTGACAAAGATCTTGCTACagatttgcaaaaaaaatctcCCATCTCCAATGAACTCTCGAACATCAGTATTGAAAATATAGGAGATTTGATGTCTAAAAAAGTACCAATCAGTACGTGCAAATCAAAGAAGGATCATTCCAAGAAAGATAACTGTATGTCAAAGAAAAGTGCAGAAAAAAGGGAAGTTGCTGACAGAGATGAAACTGTCACCCCTAAAACTATGCAGAGACCTACCAGAAAAAGTAAAGAAGCAGCAGCCATCTATATGGAAATTTTGAGCCACAAACTAGTGAATGATAACACAGTTGACGATGATGATAACGTATCAATCGACAGTTTTCCAGAATTACCAAAtgttaaaaaaactgaaaaaagagAGAACGAGCTGAAGGCACAAGCTAAGTCATCAAAAGATGAACATAAAGACAAACCTATAGTAAAAGAAACGGATAAAAAGACAGTTCCTAGTTCTGATGAAAaagacaataaaataaaaaacgtcGATAGAAAAATAGCCGATGAAAAAGAGGTTAAAATATCACCCAAGCATAAAGATGTCAAGGTACACGCTGAAACTGATTTGTTTCCTCCTGAAGAGATACCAGATGACATTAAGCTGAACGAACTTAAAAGCAAACTTGAATCCGCTTCTGTTTCTAAACAAGAAAATATTCACAAGAAACCCAGTTTAATAGGTACAAAAAGAAAGTCTCCGGGAAATAGAACATCAGTGGAAGACACCAAGTCACTTCCAGAACCAGACTCGGAAGAAACCACAAGAGGTGCAAAGCTCAGAAAGTCTGATAGCCTCAAAGGCACAGGAAATGAGCAAGATATCACGCCGAGGAGACAAACTAGAAATGCGTCTCAAACAAACAAAGCTGAGCAGAGTTACGATTCGGACGAGTCATTTCATATCGACATAAGATTGCCGAGGAAGAAGAAAATAACCAGAAGTAAGAGACTTGTGAAACCTCTGGCTATCGATGTACTTGTAGAGAAAGCGGGTCTTAAAGTGTCATCTGTCGCCAAACAGAAGTCTAGCTCCAGTGACTCTGATCAGTCGACCACATCGGACATCAACCTCCAAACTCTAGCTAACAAGGCGAAGAATAAGAAGTTTTCCAAAACGAAATCCATGAAGAAAACCGACCAAGAGTTCAGCGATTCTGACGAAGAACCTCTCTCGAAGCTGACCAATCAGAGCGTGGTGGGCAGCCAGAAATCCGGACCACAAGCTGAGAAACTGAAGGAGGAAATCGCGATCAAAACGGCGCCTAAGGCTTTCGGTAAAGCGTTGTCCAAAACACCTGAAATCGAAGCTGTGAAAAGCGAGATCAAGCCCAAGAGAGAGTGTGCTAAGATTCCGCAGAATTACCTTCCGATGCTTTCCTCCTCTGACGAGGATGAGATCTTCCATGGATTTGACAAGAAGAACGTCAAAAATGCCAAATCCATATCAGCGCTGATTCCGACTTGTAGTCACGTACCTCCTCTGCTGGACCTGCTGCACAAAGACCTGGGGAAACGATTCGGCAAGGAGAAGGTCAACATGTCGAACGAACAGATAGAGAAGTGGCTCAAGGACTCTGCGCTGGCGGGAAGCAGCATCAAGAAAGAGAACGATGAGATGCTGAAATTCGGGGAGAGGATTCCGACCGAGTCCACGCTCGAAACGTCCGAGTCCGTGGACACGGAAAAACTCAAGCTCGCTTTGCTGGAAGTATCCAAGCCGGAGCGTAAGGCGGGCGGTTCCAATGTCGAGTCGTTGGACGCCGCTACGGTCAAACCAATCGATGCCAAACTCGGTGAATCCGCCAAGCCCCTGATCGATAGGAAGTTGATTTTTCGCAAATGTAAAAAAGAAACCGCGCCCAACATCAATGCGTTTTCTCCTGAGAACGAGAGCAGCGTATACGCTTTCGGGGAGGAAAATGAGGATGTTATCAGTACGCCGTTTCGTAGACCATCCAGAAGGCCTTCCAGTACCGCAACTTCCAGATCCGAGGATGAATCTTCTAGAAACGATGATTCCTTCAAGGCTGGACAGTTCCGGAAACCATCCTTGAAACAAGATCTCTCCAGGAGCGGCAAAGACGAAACCGATGCGCCACCTACCGAGCCCGACGAAAGCTCCCACTTCTATATTCCTCAGAATCCGTCCAAGCACGGCCTCACGAAGCTCCAGAACAAAACGTTACTAAAAACGTCGAGGAGCACGGAAAAACTCTCGGACTTGGATGACTTCAAATACAAAATCCCAAGTTCGCCCAGCGCAAGTTCTTCGTCGAGCGCGAAGCTGTCCAAAAAACCAGCACCCAAGCAGAAGAATCGACCGGCAGAGTTCATTAACCCCGTTTACGTGTCGGATTTCCCGAAGAAGACCGATCCCGCGAGACTTGTCGAGGCCCCCGTCTTCCATCCGACCGATCAGGATTTTCAGGACCCTCTGGAGTATATCGAGAGGATACGGCACAAGGCGGAGCAGTTTGGCATTTGCCGCATCGTCCCGCCAAGCAGTTTCAAGCCCGACTGTAAGGTCACGGATGACATGAGGTTCACCGCCTACGACCAGTATGTGAACAAAATGCTGTATCGGTGGGGACCCAATTTCAAGGAGTTGATGGCCATTAAGAAGTACCTCGACACACAGAATATCAGCTTGATACATCCTCCTTGGATTGGTGGTATGGAAATCGACTTGCCCAGACTCTATCAAACTGTGCAAACTTTGGGAGGCCTGAAAGAAGTTATAGAAAAGAAAAGATGGCCTCGGGTGTCCGAGCTCATGAAGATACCAAAGTCGGCTCAAGATAGAGTAACGAAACTGGACGATATTTATTGCAAATATCTGCTGCCCTATGATACTCTGTCTCCAGCTGAACGAGAGAAACTCTTCGATGAAGTCGAAACGGAATGGGCTAAGAGGGAATCGAGAAGCCTCATGAAGCTTCAGCAGAAGTCACCAAGCCTAGAAGCTGTCGCTGATGCTGATTCGGAGGACTTCGAGGATAACGATATCGGAGAATGCATCGCCAAAGGAAGAAACATGGCTCTGAACGCTTTTTACAGGATAGCCAGAAACACAATGAGCatgcatttcaaaaataatgaacCACCAGCTCAAGAGGTCGAACAAGAATACTGGAAGCACGTTAGCTTGCGGCAAAACCACATATGTGTCCACTCTGGATCGATAGACTGTGGAAACTGGGGCTACGGCTTCGCCACGACGAAAAACAGCCCGTTTGCGAGGCATCCCTGGAACCTGAAAGTTCTCACTAACAATAACGGGTCCGTTTTGCGTTCTCTGGGTCCGATCATGGGTGTTACAGTTCCAACTCTACACGTCGGGATGGTATTCAGCGCTTGCTGTTGGTACCGAGACCCGCACGGTCTACCTTGGATCGAGTACTTGCACACGGGCGGCAATAAAATTTGGTACGGGATTCCTAATTCCGCCAGCGAAGCCTTCCAGACCACTCTGAGGCAGCTGGTTCCGAACTACTGCAAGAACAAAGAGTTGTGGTTGCCTTCAGACACGATTATGGTACCACCCAGTCTTCTCATAGAGAATAACGTTTCGCTGTGTCGCACCATCCAAGAACCCGGACAGTTCGTCGTCGTGTTTCCGAAAGCCTTTACCTCTAGCATCAGCACGGGGTATGTGGTCTCGGAAAGCGTCTACTTCGCCCCCACCTACTGGCTGAAGACGGCCCGGAGCCTCTTCGACGCTCTGAGGAACAGCAGCGAGCCGTCCATGTTCTCCCTGGACCGGCTTTTGCTGAGCATCACCACCGACGGTAGATGCAGCGCGGATATTTTGAGGCAGGTGATACCGCACGTGCAGGAACTCTGCGACAGAGAGAAACAGAGGAGGGACAAGTTGAAGAGCTTGGGCGAGCTAGCGAGGGAGAGGTTGCCCATACCGGACGTCAATAGGGGGAAGAAGAGGAAGTTCCTGCAAGGCGAAGAGGGCGATTACGAGTGCGAGACTTGTAAAATGAGTCTGTTTGTTTCTATgGTGTTCGATACTCAAGAAGGTCTGACATACTGCTTGGATCACGGTATAGAGATGATAGAAACGAAGAAAATACCGACGGTCAATTGCAAGTTTATGTTCACTTACGACGACGACGAGTTGGCCAACGTTCCGGATAAAATGAGATCTTCCATAGAAACGAAACTGCAGAAAAAGGTCCCGAATAAGTATGCCGGGATGCCAACGCTCCTAGGCAGACAGGGTAATCAATAA
Protein Sequence
MKRKRKSGCPSPILEDSPKRVKVHAQRKFAQGSNVNSPMITPIRELESDSPKIDVLPEPVELLPIKRPNTEDFLTFLCFRGTPILPTNLNFFNTASIVDTNGQVHEIKSESSPKNGPIDIAKCGTSSEKPFIAFGVRKRADPIVISRQMDRKRRHALAIQALRRKYQEQKMAKIRAITISKLSEKVTNKTLVRTNTISKTETVTKKSNTLQKTKVIATKHVKVTTQTLKTTLRPKIKPKMCLRSFRGRFVQKELPFRKKVARENVLIRKPMEKKVKSKNKSEKTEFSEDEEPIIKPAKLAKSQPVFKVNRKSRTEAGMKTSPRVTRSVIDKNVDIRRKQIKKRILMTNPNTIIKPRSLRLTTLKKTVQSQKKCKSVIAKQKVKATQKQHTISFNKKLDKVISVESTVEESNVKKSENTRRNVRNIEKRDSKQSDKKSPNKNEDFGKTSAIKKDYKKITDYKKETNKFVDKDKKHTNKIDIRKELTKSTDIKKDDNKTVEIKKSTRISNIVQKKEVNIDKNADKNIVKSPDLKKESGSDKLVNKSVEARKGSTISIDKEKRQSSKKENTAEIQEAVSKKVRGKSQEQAKTCTKSADSTLKKDVKATDSKKLKASSSSEETIKKGKDSSRSDIDDDCETTENINESKDLKRTKTNPVENEQVVKLREPLASTNEIISKKLLNNKINDTVTHKKLSKTKSTFEDTDDNTLEEIKRKGSRTISNPSGKSSGTNKQIPDIKSRIGAESDKEVKETIDTNKLKNKSLNDQQNQIKDVDSDSENELNIKLGKMTANKKNKSLLENKNDVSKELVNKGGKTKSALNKLQDQIKVTSNKKEEEIKKESSKVTKRGGNKLLTKSKSPVDVAHIEDDMEIKKISGDENLSKSPLEVHEDQIIVPTIERGDKDKIIIVNKMGDAAELEPKIKTLNKNAKLSEDTISMDVELKNESKKKANVALSVTDVEDEIKSVASKIENPSTDKKDSKLMECSSDEIETEKNKKILPNKSQKDEGSNSPMKPDIKTNDIKEVKNTSTNKVNAKGKSLLSKLQDEVKDSNSESEDECTKKVENKCKASKHQTTTEVTNIVKPTPNKQEMTSKLMDVADENKPKGTTIDSENEKKNEVQVAVNKLITKKSSNNKQQKEVKDPKKENDSRSIDIKDEVEESLNEVKGKSLTTKYEGTVMNADIGLEIESKTVVVSKDVKTALSHVVTSNTDEAPVADVDKRDVLLKTKGNNDKNRTECMKMSNLGKSKQESPVEMMIAVENSVDFKSEDELDIILKKEISKKSVTLTDMSDCLKKTTAGKEDGIKKRSTKTNMKKVKSKSIKEDVEDLISITNKMKKLETGSKEDSMAENDKLAGKVDKKRLENKVDGVNETFGKICKSVKANEQEFSTDKDLATDLQKKSPISNELSNISIENIGDLMSKKVPISTCKSKKDHSKKDNCMSKKSAEKREVADRDETVTPKTMQRPTRKSKEAAAIYMEILSHKLVNDNTVDDDDNVSIDSFPELPNVKKTEKRENELKAQAKSSKDEHKDKPIVKETDKKTVPSSDEKDNKIKNVDRKIADEKEVKISPKHKDVKVHAETDLFPPEEIPDDIKLNELKSKLESASVSKQENIHKKPSLIGTKRKSPGNRTSVEDTKSLPEPDSEETTRGAKLRKSDSLKGTGNEQDITPRRQTRNASQTNKAEQSYDSDESFHIDIRLPRKKKITRSKRLVKPLAIDVLVEKAGLKVSSVAKQKSSSSDSDQSTTSDINLQTLANKAKNKKFSKTKSMKKTDQEFSDSDEEPLSKLTNQSVVGSQKSGPQAEKLKEEIAIKTAPKAFGKALSKTPEIEAVKSEIKPKRECAKIPQNYLPMLSSSDEDEIFHGFDKKNVKNAKSISALIPTCSHVPPLLDLLHKDLGKRFGKEKVNMSNEQIEKWLKDSALAGSSIKKENDEMLKFGERIPTESTLETSESVDTEKLKLALLEVSKPERKAGGSNVESLDAATVKPIDAKLGESAKPLIDRKLIFRKCKKETAPNINAFSPENESSVYAFGEENEDVISTPFRRPSRRPSSTATSRSEDESSRNDDSFKAGQFRKPSLKQDLSRSGKDETDAPPTEPDESSHFYIPQNPSKHGLTKLQNKTLLKTSRSTEKLSDLDDFKYKIPSSPSASSSSSAKLSKKPAPKQKNRPAEFINPVYVSDFPKKTDPARLVEAPVFHPTDQDFQDPLEYIERIRHKAEQFGICRIVPPSSFKPDCKVTDDMRFTAYDQYVNKMLYRWGPNFKELMAIKKYLDTQNISLIHPPWIGGMEIDLPRLYQTVQTLGGLKEVIEKKRWPRVSELMKIPKSAQDRVTKLDDIYCKYLLPYDTLSPAEREKLFDEVETEWAKRESRSLMKLQQKSPSLEAVADADSEDFEDNDIGECIAKGRNMALNAFYRIARNTMSMHFKNNEPPAQEVEQEYWKHVSLRQNHICVHSGSIDCGNWGYGFATTKNSPFARHPWNLKVLTNNNGSVLRSLGPIMGVTVPTLHVGMVFSACCWYRDPHGLPWIEYLHTGGNKIWYGIPNSASEAFQTTLRQLVPNYCKNKELWLPSDTIMVPPSLLIENNVSLCRTIQEPGQFVVVFPKAFTSSISTGYVVSESVYFAPTYWLKTARSLFDALRNSSEPSMFSLDRLLLSITTDGRCSADILRQVIPHVQELCDREKQRRDKLKSLGELARERLPIPDVNRGKKRKFLQGEEGDYECETCKMSLFVSMVFDTQEGLTYCLDHGIEMIETKKIPTVNCKFMFTYDDDELANVPDKMRSSIETKLQKKVPNKYAGMPTLLGRQGNQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-