Basic Information

Insect: Chrysodeixis includens
Gene Symbol: -
Assembly: GCA_941860345.1
Location: OW796100.1:12543401-12552154[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.0032 0.25 12.2 1.0 1 23 268 290 268 290 0.99

2 11 0.0097 0.75 10.7 6.7 1 23 297 320 297 320 0.97

3 11 0.00022 0.017 15.9 0.4 1 23 351 374 351 374 0.98

4 11 0.007 0.54 11.1 0.5 2 23 383 405 382 405 0.94

5 11 0.005 0.38 11.6 0.1 2 20 416 434 416 436 0.94

6 11 0.00054 0.041 14.7 2.8 3 23 446 466 446 466 0.99

7 11 0.76 59 4.7 0.1 3 23 483 504 482 504 0.93

8 11 4.1e-05 0.0031 18.2 4.0 1 23 521 543 521 543 0.98

9 11 0.00069 0.053 14.3 0.0 1 23 549 571 549 571 0.96

10 11 1.7e-07 1.3e-05 25.6 2.1 1 23 577 599 577 599 0.98

11 11 0.0014 0.11 13.4 4.2 1 23 605 628 605 628 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.0032	0.25	12.2	1.0	1	23	268	290	268	290	0.99
2	11	0.0097	0.75	10.7	6.7	1	23	297	320	297	320	0.97
3	11	0.00022	0.017	15.9	0.4	1	23	351	374	351	374	0.98
4	11	0.007	0.54	11.1	0.5	2	23	383	405	382	405	0.94
5	11	0.005	0.38	11.6	0.1	2	20	416	434	416	436	0.94
6	11	0.00054	0.041	14.7	2.8	3	23	446	466	446	466	0.99
7	11	0.76	59	4.7	0.1	3	23	483	504	482	504	0.93
8	11	4.1e-05	0.0031	18.2	4.0	1	23	521	543	521	543	0.98
9	11	0.00069	0.053	14.3	0.0	1	23	549	571	549	571	0.96
10	11	1.7e-07	1.3e-05	25.6	2.1	1	23	577	599	577	599	0.98
11	11	0.0014	0.11	13.4	4.2	1	23	605	628	605	628	0.96

Sequence Information

Coding Sequence: ATGGATGAATTAAAGTATTGCCGGGTATGTCTTGTGACGGGAGTAAAGATGTTCAGTTTAAACACGACATCAAGTGATTCTATTGGAGTTGTTTATTCACATTTGGCGCAGATACCAATAATTGATAAAAATCAGTATGTGTGCTACGAATGTGCAAGCTTACTCTATAAGTATCAGAATTTTAAGTCTAAATGTCTTAGAGCTCACAACATACTATCCAGACTCAAGGTGGATACAAAACAGTTGACAAAGCAGGCAATCCAAAGTATTGATCGGAGACTGAACAAATTGGAATCTACTCTCAAACTTTCGCCTGTATCTGTCTCTTACAATGAATCAATAATTCATTCAAACACACATTTAGATATAAATGAAATCAAATTAAAAGAAGACAAAGAAAATAGGCAAGTAGAAATTAATATTAAAGTTGAAGAAATAAATGATATTCATCAAGATGAAAAATGTGATGACATGCATGACAACAATTTTATACCTTCTTCAGACGATGAATTACCTGAAATAACTCAAATGATAAAACGTAAACATAAAGCAAACAAAGAACCAAAGGCTAAAAAAAGAAAATTTAAAACAATTATAAAGAGTGAAGATGATTTCAGTGATAATGAACCTCTTTCAAAAAGTGTTACAAAATTTTTGGACAAGCAGAAGTCGCTTAAAAAGAAGAATGGTTTAAATATTGGATACTTTGATGATTATGCAACTGTTGTGTTCCTGACACCTGAAGATGCAAGAAAGGAGGTGTTGTTAAGAAAAGAGTCCAGTAACTACAAAAAGTCTCCATTCAAGTGTGATTTCTGCTACAGGGGTTATGAAGCTAAAGCAGCTTTTGAAAATCATATGAAGAAACATAGTGTTGAATATGGTGAGTATGAATGTGATCTCTGCCACCTTAGGTTCCCACAACAGATATATTTATGTAAGCACAGACTGTCATGTCATAAGAGAAAGTTCAGCTGTAAACTGTGCCCTTATGTGTGCTACTGTACATACCAGGCAAAAACACATGTTAGCCTTCATAAAGGAAAGAAATACCCTTGCAAAGATTGTAGTGAAATATTCAGCATGCCAAACAGCCTGCTAATGCATAAACGTATGAAGCATTTGAAGGAGTCGGTGCGAGAGAGTGTGTGCGAACACTGCGGGAGCACGTTCGGTACGCCGCGCGGACTGTTCCTACATAACATGAAGGTTCATAGACAGGACAAAAATGACAAACTAGGGCCAGAGTGTGAAGACTGTGGGGTGCACTTCTCATCAGAAGTCGCGTGGAAGCGACATCTAGTGTTATCTACGAAGCATAAAGTCAGCAACGGTTGCAAGTTTTGTGGCGAAACGTTTTCGAATATGGACGACCTGAAGTGCCATATGAGAGTGCATTCGAGGAAGCATGTCAATAGATCTGACAATATCAAACTACCGGCAGCTTGCGCTATATGTGACAAATGGCTTTCGAATCGCGTTGAATATAAATCGCACGTGACGTCAGAGCACCCTCAGACGGACGAAGCTAAGAAGTTCACCGCGGATGATCAGACACCATTCGTTTGTGAAGTCTGTGGACAGATGTTTAAGCAACAGTGTTTCCTGACGTACCACCAGCGCAAGCACACGGGCGAGCGTCCGTACGCGTGCGGCGACTGCGGCAAGCGCTTCCAGCTGGCCGGCGCGCTCGCTGTGCATCGCGCGGTGCACAGCCGCCGGGTGCAACACAAGTGCGATATGTGCGGCCGGGTGTTTACCTTCAAAAGCGCTTTGAATAAACATATTAAGGTCCACCTCGGTATCCGTCCTCACAAGTGCGCGATCTGCGACAAAGGCTTCATACACATGTGTGACCTGAAGCTCCACATCAAGTACGTCCACGACAAGGTGCCCTGGCCTAAGAAGAAAAGCAAAAGGAATATATCTGAGGAACATGCACCGTTTTTGGAATATAACTGA
Protein Sequence: MDELKYCRVCLVTGVKMFSLNTTSSDSIGVVYSHLAQIPIIDKNQYVCYECASLLYKYQNFKSKCLRAHNILSRLKVDTKQLTKQAIQSIDRRLNKLESTLKLSPVSVSYNESIIHSNTHLDINEIKLKEDKENRQVEINIKVEEINDIHQDEKCDDMHDNNFIPSSDDELPEITQMIKRKHKANKEPKAKKRKFKTIIKSEDDFSDNEPLSKSVTKFLDKQKSLKKKNGLNIGYFDDYATVVFLTPEDARKEVLLRKESSNYKKSPFKCDFCYRGYEAKAAFENHMKKHSVEYGEYECDLCHLRFPQQIYLCKHRLSCHKRKFSCKLCPYVCYCTYQAKTHVSLHKGKKYPCKDCSEIFSMPNSLLMHKRMKHLKESVRESVCEHCGSTFGTPRGLFLHNMKVHRQDKNDKLGPECEDCGVHFSSEVAWKRHLVLSTKHKVSNGCKFCGETFSNMDDLKCHMRVHSRKHVNRSDNIKLPAACAICDKWLSNRVEYKSHVTSEHPQTDEAKKFTADDQTPFVCEVCGQMFKQQCFLTYHQRKHTGERPYACGDCGKRFQLAGALAVHRAVHSRRVQHKCDMCGRVFTFKSALNKHIKVHLGIRPHKCAICDKGFIHMCDLKLHIKYVHDKVPWPKKKSKRNISEEHAPFLEYN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00000591;
90% Identity: -
80% Identity: -