Cinc019822.1
Basic Information
- Insect
- Chrysodeixis includens
- Gene Symbol
- -
- Assembly
- GCA_941860345.1
- Location
- OW796116.1:6388744-6391606[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.0039 0.3 11.9 0.5 1 23 237 260 237 260 0.94 2 19 0.00017 0.013 16.2 4.6 1 23 265 287 265 287 0.98 3 19 4.4 3.4e+02 2.3 0.3 2 23 291 312 291 312 0.90 4 19 0.11 8.4 7.4 2.2 1 23 317 340 317 340 0.95 5 19 0.00075 0.057 14.2 0.5 2 23 401 423 400 423 0.96 6 19 0.00066 0.05 14.4 1.2 1 23 429 452 429 452 0.92 7 19 0.0085 0.65 10.9 0.7 2 21 456 475 455 476 0.94 8 19 0.00034 0.026 15.3 1.1 1 23 484 507 484 507 0.95 9 19 2.9 2.2e+02 2.9 2.3 1 23 512 535 512 535 0.92 10 19 0.0028 0.21 12.4 0.2 2 23 548 569 547 569 0.96 11 19 0.0031 0.24 12.2 2.5 1 23 575 597 575 597 0.97 12 19 4.8 3.7e+02 2.2 0.4 2 12 603 613 602 619 0.83 13 19 0.00087 0.066 14.0 3.3 1 23 633 655 633 655 0.97 14 19 0.007 0.54 11.1 0.3 2 23 660 681 659 681 0.93 15 19 0.00024 0.019 15.7 0.2 2 23 699 721 698 721 0.96 16 19 0.00048 0.037 14.8 2.7 1 23 727 749 727 749 0.98 17 19 0.0043 0.33 11.8 5.6 3 23 757 777 755 777 0.95 18 19 0.00016 0.012 16.3 2.0 1 23 783 806 783 806 0.97 19 19 2.2 1.7e+02 3.3 1.9 3 23 813 834 811 834 0.94
Sequence Information
- Coding Sequence
- ATGGAGTCGGAGCAAACTCAAGAGGCCACCAATAACATGGAATGGGTAAAGAACAAATTACAGACAGTGTGGACATCTCCGAAGTTCTGTGGCCTGTGCTTGGAGAGCCGCGGCAACTTCTGCTCTCTGGATATGGAGCTCATGATCAATAAGCAAACCTTCTCGAAGTGCTTACAGGATATCATTAATTATGTATTTAATGAGGATATTGAAAAACTCATGACCAGCCATGACATATGTGACAGCTGCACAGAAAAGACCATACAAGCTTACATCTTCATACACAACACAAAACAGCTGTCCAAAATCATGAACAATTGTGTCTCGGACATTTACTCCAAAGTTATTGATATAAACGAACAGCTGGACGATCAGACACAATATGACAACTCAAATGTCATGATAGTCCTTGAAAATGACACGGACTTGTACAAAACCATCATCGATGTGAAGGCAATGACAGAAATCATATCAACTTCTATACCCATAGCGATGAAAGAGACTGTGTCACCTAAAGTTAATTTTATTGAGCAAGCATTACCTAAGAAGGTTGAACTGAAAGAAGTTGTAGTTAAGGTGAAGGAAGAGACAGAGACGCGATCGGCAACACATTCTGACACACCTAACATTTATCTACAACAGGGCCATATTGTTGTGAATCCTCTCAGTACAGTTAGGAGTTCGACTATGGCACCTAGATTCAATACCTATGAGTGTACTGATTGCCCCGACATCTTCACAACTTACAGATCTTTGAAAGAACATGAAAAGGCCAAGCATAAAATATCCGTATACCATTGCAAACTATGCGACAAGACTTATAATACACTACAGTATCTAAATATTCATTATAAAACACATGCTAAAGCTCGCTGTAAACTGTGCCAAACTATTTTGCCTGAAGAAGAACTGATGGACCATTTACGGAAACTTCATAAGAATCTGGTGTTTCCTTGTAAGTTTTGTGAGCTAGTGTACTATACTCAAGAATGTTTAGACACGCATTTTAATATCAGTCATTTGGTCAATAACACTAGAGCGAGTTCTCAGTGTATTATGTGCCTTAGAAACTTTGCCGATTCGGAACTAAAGAAACATAAGTGCAAGTTTTTTTGCTCAGAATGTTTCGTCATGCCCTGCGTCCACTATAAGTACTTGATGTCCTACCGAGAACAGTTTCTGAGTCACGTAAATAAAGTTAAATGCGTGGATTGTGATTACGTCACGCGACGTAAAGAGCATTTGATCGGACACGTCAATCGGGAACATTTGGATCACCACCCATTTACTTGCGCAGATTGTGGGCAACAGTTCTACACAAAATTGAGTTTGAAGACCCATTTAGTACAGTTCCATCAAGATCTGCACTGTCCTTACTGTGACTTTCTGTTTAAAGACACAAATAGTTTGGAAAACCATAAGAGAGCTTGCAAGACTGTTATCCGAGCTTTTGCTTGTAAACACTGTAAAGCTTCGTTTGATGTGCTCGAAGAGCTGACAAGACATCAAAACCTAATGCACAACGATGGTGTCCACGCTTGCAAGCTTTGTAAAGGCAGATTCCTGACCAACATACAGTTGCAAGAACACCACGCGAGGGTCCACGGCGGCATACAGTGCAAGAAGCGCAGGAAACATATCGAGTGCTCTCTTTGCGATATTATGTTTAGAACGATCAAGGAATTACTTCAACATGAGAAATTACATAACCCTGATGATATCTTCCCTTGTAAAGTATGTACGAAACAGTTCAAGTCTCTTCGGAAGTTGTACATTCATAACCAAAGACACTACACATCGAGAACAAAGTGTTCAGGGTGCAATAAGAAGGTGGCATCGTCCTTCTTTGCCCAGCATGCTGTCAGGTGCCCATACAAGAACGACGCAGTTTTGAACCATGTTTGTGAAGTATGCGGCAAGTCTTTCCATCTACAATCACTACTCCGTTTCCATCAGAGAGTTCATTGCGAGCCGGTAAAGTGTCCGTACTGCGATAAAATGATAAAGCCAAACAGCTTGAAGAGGCATTTGGAACAAATACATCCAGATAATAGTTCTAAAGTGCCCGCCACCGTTCCAAGCAAGCCTTCTATAGAGTGTGAGTTGTGTGGCCATGTGGTGAGGAAAAAGGTGGATTTGGAAGCCCACATGAATCGCTATCACTTTAAGATCAAGCCATACGTCTGTCATATATGCAGTAAAGACTTCTGCGGTAAAGTCCGCCTGAAAGAGCACATCGCGACCCATACTACGGACAATAGCTGCTTCTGTCTGGTGTGTGGAAAGAAATTCGCCAACCGCGTATGCCTGAAAATGCACTTCAGAATGCATACTGGTGTATTCCCGTATTCGTGTGATATTTGTGAGCAGAAATTCAGATCTTCTAGCATGATGAAAACCCATAGACTAAAACAGCATTCGGAAAGGAGTGTGAACTGTCCCTTGTGCGATAGTAAATTCTTCATGGTTCGAGATATGAGACATCACTTCAAGAAAGCGCATTGGAAGGTCAAGGACGGCCGACCTTTCGACCCTAGCGATGTTCCCGAACTACCCAAGGAGTATTACCATCTATTTGAGGATAGGAGGCTGCCGAAAATATCCTGA
- Protein Sequence
- MESEQTQEATNNMEWVKNKLQTVWTSPKFCGLCLESRGNFCSLDMELMINKQTFSKCLQDIINYVFNEDIEKLMTSHDICDSCTEKTIQAYIFIHNTKQLSKIMNNCVSDIYSKVIDINEQLDDQTQYDNSNVMIVLENDTDLYKTIIDVKAMTEIISTSIPIAMKETVSPKVNFIEQALPKKVELKEVVVKVKEETETRSATHSDTPNIYLQQGHIVVNPLSTVRSSTMAPRFNTYECTDCPDIFTTYRSLKEHEKAKHKISVYHCKLCDKTYNTLQYLNIHYKTHAKARCKLCQTILPEEELMDHLRKLHKNLVFPCKFCELVYYTQECLDTHFNISHLVNNTRASSQCIMCLRNFADSELKKHKCKFFCSECFVMPCVHYKYLMSYREQFLSHVNKVKCVDCDYVTRRKEHLIGHVNREHLDHHPFTCADCGQQFYTKLSLKTHLVQFHQDLHCPYCDFLFKDTNSLENHKRACKTVIRAFACKHCKASFDVLEELTRHQNLMHNDGVHACKLCKGRFLTNIQLQEHHARVHGGIQCKKRRKHIECSLCDIMFRTIKELLQHEKLHNPDDIFPCKVCTKQFKSLRKLYIHNQRHYTSRTKCSGCNKKVASSFFAQHAVRCPYKNDAVLNHVCEVCGKSFHLQSLLRFHQRVHCEPVKCPYCDKMIKPNSLKRHLEQIHPDNSSKVPATVPSKPSIECELCGHVVRKKVDLEAHMNRYHFKIKPYVCHICSKDFCGKVRLKEHIATHTTDNSCFCLVCGKKFANRVCLKMHFRMHTGVFPYSCDICEQKFRSSSMMKTHRLKQHSERSVNCPLCDSKFFMVRDMRHHFKKAHWKVKDGRPFDPSDVPELPKEYYHLFEDRRLPKIS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01487975;
- 90% Identity
- -
- 80% Identity
- -