Cinc021534.1
Basic Information
- Insect
- Chrysodeixis includens
- Gene Symbol
- -
- Assembly
- GCA_941860345.1
- Location
- OW796119.1:5149464-5183950[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.8 61 4.7 0.1 2 23 494 515 493 515 0.94 2 17 0.0056 0.43 11.4 0.0 1 23 525 548 525 548 0.95 3 17 0.04 3 8.8 3.8 2 23 759 780 758 780 0.95 4 17 0.32 24 5.9 0.9 1 23 792 816 792 816 0.91 5 17 0.00015 0.011 16.4 0.3 2 23 823 846 822 846 0.97 6 17 0.078 6 7.9 0.2 1 23 852 874 852 874 0.93 7 17 0.0038 0.29 12.0 2.9 1 23 880 902 880 902 0.98 8 17 2.8 2.1e+02 3.0 0.3 2 19 913 930 913 933 0.90 9 17 0.044 3.4 8.6 0.2 1 23 1012 1034 1012 1034 0.97 10 17 2.3 1.8e+02 3.2 7.2 1 23 1041 1063 1041 1063 0.95 11 17 0.0015 0.12 13.2 1.8 1 23 1254 1277 1254 1277 0.95 12 17 0.00026 0.02 15.7 0.7 1 23 1284 1307 1284 1307 0.98 13 17 0.0043 0.33 11.8 0.2 2 23 1329 1351 1328 1351 0.96 14 17 0.0031 0.23 12.3 5.3 3 23 1372 1393 1371 1393 0.95 15 17 0.00094 0.072 13.9 1.7 3 23 1432 1452 1430 1452 0.96 16 17 0.00014 0.01 16.5 0.1 1 23 1458 1480 1458 1480 0.97 17 17 0.00023 0.018 15.8 0.8 3 23 1488 1509 1486 1509 0.95
Sequence Information
- Coding Sequence
- ATGTCAGAAACGCAGCCCCCTTTAATCCTCTGCATGGAGAATGCAGCGGGAGAAGATGTGGCTCTTAAGATAGAGCCAGATGATAACTTTCAGACTTTTCTGGATAAAGCTAAGTCACTATTAGGTTTTGATGTGGACCTTAACTCAATCACAAGAAACCAGCCTGTCTCCCTCGCAGACAATGTCTACCAATTCCTAATAACCGCTGAACAAAACCTGCAACAGGACGAGCTGGCTCAAAACTTTGATCAAATGTTGGACCCAAACGATGGTGCCAACGATTTGGTCTACATATTGGACGATGGCACTCAAATACGAGCTTCACAGATACATTTTGATAATGATGACCCGTTAATTGATTTGACAGCGGAAAAAATACCCTTTGTGAAGTATGCCGATGATGTTACCGATGATTTAGATGTGGAAAATATGAATATACAGGAAACGAAGAAGATTAATATAGTTGAAAGTCCTGTATCTCGTTGGTCAAGCAAAAACTCCAGTCCGAAATGTAGTTTTGTGAACTCTCTACCTTTTAAACTTGTGTGTAATAACACGTCTGGTTTCGAAGCTCAATTCACTAAATATTTAGAAGCAAACACAGCTAAAACGTATGCGACTTTGAACCCTGTGACAGCTAGAAATAAGTCTCCAAAAAGCTTGATAAAGGACAACTTTAAAAACTATGATGAGAGCTACCAAAGAAGTGATAACTTGTCTTATACTAGGGAGGATATTTTGAACATGTTCAAGGACTCCCCGATGACGTCATTACCGTATGATCAAGGGTATGGGGAGAGGAGACATGTTAGGAAGACAGACCCGTCTAGACTAGTCCATAAGAATTGGAACAAGCCTATATCCTATGTAGATATTGATGGAACTTTAATTGGTGAAAGTGAAAGCCAGATTTGTTTTATTTGTGGGAAACATGTCGATAATAGTGTTGATAAGTTGTATCTTTTTGATAACGAGGACCAAAGACTCCATAGATGTTCCCCGCAAAAGAAAATGTCGACGCAATTGAAAATTATATGCGAATGCTGTCTTAATGAGAACTTTAAGCCGTGTCGAATGAAAAGTGCCAACCAATTTTTGAACCCTGACGAATTTTTGGTCATCAGAAACAATCAGCAATACATATTTCAGAAAATCAAAAATTTCTCTTTCACACATTTGGGAAAAGCGAAGGAAATCATAAACAAGATAGAGTCCAAAGTCACAGACAAGGAAGAGTTTGTTAAAGTTGAAATTGGGTCTGATGGAGAAATTATAACTAAGCCCATAGACAATGACCCTAGGTCTGATGACGTCATCATAGTGAAGGACGAAAAGAAGGACGGTAGTTCGAGTGATGTAGAGATTATAGAACCTGAACCGGAAATAGATAATATCATAGACAATTTGGAGGAGGCGGATGAGGAAGTAAAGGAGTTTTTGGGGAAATATCAATGTGATAGTAGTGAAGTTACGGAGCTTAAATGCAGATTCTGTGAGGAGATATTCGCGGATCTGACTGAAGTTACGGACCATTCTGAGTCACATAAACACGAATTGGAAGACGGCGAAGTGTATCCGTGTCCGTTGTGTAACTACGGCTATGCAAATCTGAAATGGTTGAAAGGTCACCTAAAAGCTGCTCACGAAAAGTCCGAAACTAACAATAAAGATGATGATCTAATCAAAGAAGAAAATAAAGGCGACTCTCAGACATCACCTAAAGTGTCATCGCCGATAGCTAAACGCACGCGTAGCTCCAGTAAAAAGGATGGCGATGGAAAAGAGGAGAAGCCATCAAATGAAATTAAATCAGATTTGAATACGGAAGCGgtggaaccccctacaATAAAGACGGAAGTGAAACAAGAGTGCGTGGATAGTAGTGAGGACGAGATATGGATAGTACAGACCGCGGATGCTGAGGCCACGCACGAGCTGCAGAAACTTCTAGATGCTGCCAAGctacttagtttactcaactttacactagatggcgttgtgcgacagttgagaaacattacattacactttattttcaacagtcaaatcttcccaAGCGCGGAAAGCTTATCGAGCCACCGGTGTCGTCGGCGCGGGCGCAAGAGGAAATCTAAGGATCTCGTGAACCTTATATGTATACCTACGGAGGAAGATTTTCTTAAGAGAGCACAGGGACGACCAAGACATATTGATACGTCGACTGACAATGATCTGCTAGTCATGCGTTCAAGAAAAAGGCGCAGCCGGGAACCGACCTCCAACCCTCAAGTTGTGACTTGTCACAATTGTAACGAGTCCTTCACTTCCAAAGTTAGACTCAAGTTCCATATGCAGTTCCACGACACGACAGCTCTGCTATCATCGGACGGTCGCTACAGTTGCTCAGAGTGCGACGGCGCCAGCTTTACCACTGAGACTGAGCTGTTCGACCACGTGCACTTCCAACATGACAAGCAGAAGCAGTGGCAGTGTCCCGTCGACGGCTGCGGGAAGACTTTCTTCCTAAGGGCAACACTAACGAAGCACAGCCGCACGCACACAGACACGCGGCGCTACGTGTGCGTGACGTGTGGGAAACGGTTCCTGGACAAGCAGACGCTGGACGAGCATGGCGTGACGCATCTACAGATCAAGCCATTCCAATGCCACATATGCTTAAAGCAACTCACCCGCCGCTCTCGCCTGCGCATGCACGTGCGCGCGCATGAAGAGGAACTCGCTCCGAGGCTCGTGCGAGTGTGTGCTGTGTGCGCACGAGCGTTTAGAGATCATAGGCATGCACAGGAGCACGCAACAAAATCGACGGAATGTATCGAGGCGTTCGCGAACGAGTTAAAGGAGGAGGCGGAAGAGGTGACGGTCCAGCTGTCGCCCACTAGTGGGCTAGTCAGACATAGCGTGCAGATTGTGGAATCACCAAAACTTTCTATGCCGATCAAGCGTCAAGTGTCACCAGAAGTGAGTGAGCCGCTGTTATCTCAGCTGGCGGACGAGGCCAGGGCTCTCATTAGAGTGGTCGAGATCGAGAAGGCATTCCGATGCGAGTATTGTGAGGATGTATTCTACTTGGAGAGCGGCCTCAACACGCACCGCGCGATACACAAGGGCGTGAAGAATCCCTTCACGTGCCACATATGTAAAGTTAGCTTCGCGACTTATTCCAGATGCACGACCCACAAGACAACGCACGGGTTCTACAAGCGCTCGCTAGCGGACGCTAAGAAGCAAGCCGGCGCCGCCAGCGCGCCCACACGCATACTGGGCTACGGAGACTTTCCTGTAGTCAAACACTTCCTGTGCGAGGTGCATCTGTCACATAGATGCAGGACCCACAAGACAACGCACGGGTTCTACAAGCGCTCGCTAGCGGACGCTAAGAAGCAAGCCGGCGCCGCCAGCGCGCCCACACGCATACTGGGCTACGGAGACTTTCCTGTAGTCAAACACTTCCTGTGCGAGGTGCATCTGTCACATAGATGCAGGACCCACAAGACAACGCACGGGTTCTACAAGCGCTCGCTAGCGGACGCTAAGAAGCAAGCCGGCGCCGCCAGCGCGCCCACACGCATACTGGGCTACGGAGACTTTCCTGTAGTCAAACACTTCCTGTGCGAGGTGCATCTGTCACATAGATGCAGGACCCACAAGACAACGCACGGGTTCTACAAGCGCTCGCTAGCGGACGCTAAGAAGCAAGCCGGCGCCGCCAGCGCGCCCACACGCATACTGGGCTACGGAGACTTTCCTGTAGTCAAACACTTCCTGTGCGAGGACTGCGGCCGTTCCTACTTACACTGGACGTACTTACAAGTCCACAGACGTATGAAACACGCGAACGAAAACTTTCTGTACAAGTGTAACCAGTGTGAACTGACCTTCCCTAACAGTTGGAGTCTGGCCTACCATCGTAAGAAGGTCCATGGAAAGACGGGACCTGATGACCCTGGCTCCACCACCAAGATCATCAGAGATGACTACAGAATCCCATGTCGCGATTGCGACGAAGTGTTGCCAAACAAAACTGCGCTCTATAAGCATAGGAAGAAGGAACACAGCGACGGAGCGGCTCGCGTTAAAACTAAACAGGGCGAGGAGGGCGGGACAGGCGGCGCGTGTTCACATTGTCACGCCACCTTCACGCACGCCTCGAACCTGCATATACACGTCAAAGAAGTACATAAACAAGAACCTGAGACTTCGTGCACGTCGTGCCTTACTTTAGACTACCGCGTCCCTCCGTCCCAGCCGCTGGGCAACCCCGCCCAGCCTGGGCAAGCCCGACGCCCACACTTATGCCCAGTGTGTGGGCATGCGTTCCGTACGTTATCCATGAGGAACGAACATCTGAGGGTCCATACTGGAGAACGGCCTTTTCCTTGTGATGTGTGTGGGGTGGCGTTTAGAAGATCGACAGCCATGCGTAACCACCGCCTGATCCACACGGGTATCCGTGCGTGGGCGTGCGAACGTTGTCCCAAACGTTTCCGCATCCGTTCCGACCTGCGCACGCATCTGCGGCTCAAACACCCCGCCACTATACTGGTTATAGAGATGGAGGGCATGAACCCTAGTTCGGAAGACGTGATGAAGACGCTCGCGCTACACAACGTGCCGCACGACAAGCTTATTGAAGTTACCAAGATGTCCTTCGCGAAGGGCACAGCGAGTGTGATCCCGTGCAGTGCACGAGCGCTGTCAGCTCTCGGTGGAGTTCCGCGCGACAGTGTGGCGTGTGGGAAACCCGCGCCGCCGAGGATGATGGAGGAGTTCCAGCCGGCGCGTCGCGGGCGCGGCATCGCCAAGAACCCGCGCCGCGCGAAGCTGCCGCACGCACAACACGCACAGCACGCACAACACGCACAACACGCACAGCATACACAGCACGCACAGCATACACAGCAAGCGGCCGCACCGCAAGCATCGCACGCGTCGCAAGCACAGCATGCCACGACATATCCCATCGCTGAGCTATCGGACTTGAACGTGCAACTCCTGCTACGGGACGGAGTGTTAGTCAACGGGAACCAAATGGTGCAGCTGCAGTTAGACGATCCCTTGTTACTGCAGTGA
- Protein Sequence
- MSETQPPLILCMENAAGEDVALKIEPDDNFQTFLDKAKSLLGFDVDLNSITRNQPVSLADNVYQFLITAEQNLQQDELAQNFDQMLDPNDGANDLVYILDDGTQIRASQIHFDNDDPLIDLTAEKIPFVKYADDVTDDLDVENMNIQETKKINIVESPVSRWSSKNSSPKCSFVNSLPFKLVCNNTSGFEAQFTKYLEANTAKTYATLNPVTARNKSPKSLIKDNFKNYDESYQRSDNLSYTREDILNMFKDSPMTSLPYDQGYGERRHVRKTDPSRLVHKNWNKPISYVDIDGTLIGESESQICFICGKHVDNSVDKLYLFDNEDQRLHRCSPQKKMSTQLKIICECCLNENFKPCRMKSANQFLNPDEFLVIRNNQQYIFQKIKNFSFTHLGKAKEIINKIESKVTDKEEFVKVEIGSDGEIITKPIDNDPRSDDVIIVKDEKKDGSSSDVEIIEPEPEIDNIIDNLEEADEEVKEFLGKYQCDSSEVTELKCRFCEEIFADLTEVTDHSESHKHELEDGEVYPCPLCNYGYANLKWLKGHLKAAHEKSETNNKDDDLIKEENKGDSQTSPKVSSPIAKRTRSSSKKDGDGKEEKPSNEIKSDLNTEAVEPPTIKTEVKQECVDSSEDEIWIVQTADAEATHELQKLLDAAKLLSLLNFTLDGVVRQLRNITLHFIFNSQIFPSAESLSSHRCRRRGRKRKSKDLVNLICIPTEEDFLKRAQGRPRHIDTSTDNDLLVMRSRKRRSREPTSNPQVVTCHNCNESFTSKVRLKFHMQFHDTTALLSSDGRYSCSECDGASFTTETELFDHVHFQHDKQKQWQCPVDGCGKTFFLRATLTKHSRTHTDTRRYVCVTCGKRFLDKQTLDEHGVTHLQIKPFQCHICLKQLTRRSRLRMHVRAHEEELAPRLVRVCAVCARAFRDHRHAQEHATKSTECIEAFANELKEEAEEVTVQLSPTSGLVRHSVQIVESPKLSMPIKRQVSPEVSEPLLSQLADEARALIRVVEIEKAFRCEYCEDVFYLESGLNTHRAIHKGVKNPFTCHICKVSFATYSRCTTHKTTHGFYKRSLADAKKQAGAASAPTRILGYGDFPVVKHFLCEVHLSHRCRTHKTTHGFYKRSLADAKKQAGAASAPTRILGYGDFPVVKHFLCEVHLSHRCRTHKTTHGFYKRSLADAKKQAGAASAPTRILGYGDFPVVKHFLCEVHLSHRCRTHKTTHGFYKRSLADAKKQAGAASAPTRILGYGDFPVVKHFLCEDCGRSYLHWTYLQVHRRMKHANENFLYKCNQCELTFPNSWSLAYHRKKVHGKTGPDDPGSTTKIIRDDYRIPCRDCDEVLPNKTALYKHRKKEHSDGAARVKTKQGEEGGTGGACSHCHATFTHASNLHIHVKEVHKQEPETSCTSCLTLDYRVPPSQPLGNPAQPGQARRPHLCPVCGHAFRTLSMRNEHLRVHTGERPFPCDVCGVAFRRSTAMRNHRLIHTGIRAWACERCPKRFRIRSDLRTHLRLKHPATILVIEMEGMNPSSEDVMKTLALHNVPHDKLIEVTKMSFAKGTASVIPCSARALSALGGVPRDSVACGKPAPPRMMEEFQPARRGRGIAKNPRRAKLPHAQHAQHAQHAQHAQHTQHAQHTQQAAAPQASHASQAQHATTYPIAELSDLNVQLLLRDGVLVNGNQMVQLQLDDPLLLQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -