Cinc016495.2
Basic Information
- Insect
- Chrysodeixis includens
- Gene Symbol
- Hivep2
- Assembly
- GCA_941860345.1
- Location
- OW796110.1:6299681-6309247[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 9.5 7.3e+02 1.3 0.1 1 9 61 69 61 78 0.76 2 12 0.018 1.4 9.8 0.5 1 23 194 217 194 217 0.95 3 12 0.00017 0.013 16.3 2.4 1 23 224 246 224 246 0.99 4 12 0.12 9.5 7.2 0.6 2 23 251 273 250 273 0.90 5 12 0.045 3.5 8.6 1.9 1 23 282 304 282 304 0.97 6 12 3.9e-06 0.0003 21.4 0.2 2 23 309 331 308 331 0.96 7 12 0.00014 0.01 16.5 0.1 1 23 338 361 338 361 0.95 8 12 0.03 2.3 9.2 3.2 3 23 368 388 367 388 0.97 9 12 5.9e-05 0.0045 17.7 0.4 1 23 399 422 399 422 0.95 10 12 5.3e-06 0.0004 21.0 3.1 1 23 428 451 428 451 0.94 11 12 1.1e-05 0.00085 20.0 0.8 3 23 462 482 461 482 0.98 12 12 0.0018 0.14 13.0 1.4 2 23 489 511 488 511 0.92
Sequence Information
- Coding Sequence
- ATGGCTTCTATATTACATATTGATGTGATTGAATATAATCCTGAAGACAATATAAGGCACTTGAATAAATCTTGCATTTGTTGTACGACGCAAAATGGAGTTTTGGTAGATTTAAAAACTTGTAAACATACATCGTTTTTAGATAGTTACTTAAAAATTCAGCTCCCTTTACAAAACGTCTTCATTTGCAATATATGTCACAACATGTTGAAAAAGATCGAAGCGTTCAAACAGCAGGTAGAGGAGAGTGTTGCGTTGCTTCTTGATCAGGTACCAATCTTAAAAATAAACAAACTCCACAACTTTCTCACACGGCTCGAAATCGACGGAGTACCGCAGTTAGACCAACCTTCAGAAATTAAAACTGAACAGATAGATTTAGAATTAGATCTCGACTTTAACACAGATATTAAAGTCGAACACGATTCCGACTTCGAAATTGAAGCTACGACTTCAAAAAAGAAGTCGGCTGTTGAAGCCAAATATGAGGGGAAGATTAAAGTTGTTATTTTGAGTAGTGTAGAGGTGCAAGAGGAAAGAGATGCGATGGCTAAAAAGGAGAATTATTTGAAGTTGCCATTCAAATGTGAAGACTGTATTATTGGTTTTGATCACGAAGTGACATTGAAGAATCATATTGAAAACCGGCATAAGAAGAAGAAGAATAGTTTCCAGTGTGAAATTTGTAAAACAGTTTTGAGTTCGAAACATTCTTACAATGATCATATCAACAGGCATGGAAGGAGGCTAGAGTGCGCTATATGCGGCAGACGATATAACCACATCCAGTCGGCGTTACAGCATTACAATGAGAAGCATGCTGATGGGACGCCTGTCAAAGTGTATACATGTAAGCTGTGCGGGTTTACCACTCCATTAAACCGAACCTACCGGTATCATTTGGACAAGCATAAAGAAAAGCAGGAATGCAAGATATGTGGTAACACCTTCGTGAGCAGCAGCGGACTCAAAGTGCATATGTACACAGTCCACAAGCAGTCCACGCGCGTGTTCGCGTGCGACGCGTGCGACAAGACATACCGCGTGCGCTCCGGCCTGCGCGCACACACGCGCGCCGCACACACACACACGCGCGCCTTCTGCGTGGAGTGTCGCACGTGTTATAACACAACGCAGGGACTCGCGCATCATATGGCCACGCATTCGCGACATGTCGGGGAAAGTGATAAGAGATTCATATGTGACGAGTGTGGAGCTAAATTCGTGAAGAAATGCGACTTACAAGTACATATCAACTGGGAACATCTGAAGATTATGAAACATCGCTGTACTAAGTGTTCCAAGGTTTTCAAAAGTAACTCTGCATTGACACGTCACGTCAACTTCGTACACCTTAAGAAAAGGCCACCCCGTAACAAGATATGTGATTACTGCGGGCGAGCGTTCACAACACAAACCATGTTGAAGTTCCACATTCGCACACACACTGGAGAGAGGCCGCTACAGTGCACACACTGTCCGGCCACATTCGCACATTCCGCCGCGCTATACACGCACAACAAACTATTGCATCCTACCAATAAATAA
- Protein Sequence
- MASILHIDVIEYNPEDNIRHLNKSCICCTTQNGVLVDLKTCKHTSFLDSYLKIQLPLQNVFICNICHNMLKKIEAFKQQVEESVALLLDQVPILKINKLHNFLTRLEIDGVPQLDQPSEIKTEQIDLELDLDFNTDIKVEHDSDFEIEATTSKKKSAVEAKYEGKIKVVILSSVEVQEERDAMAKKENYLKLPFKCEDCIIGFDHEVTLKNHIENRHKKKKNSFQCEICKTVLSSKHSYNDHINRHGRRLECAICGRRYNHIQSALQHYNEKHADGTPVKVYTCKLCGFTTPLNRTYRYHLDKHKEKQECKICGNTFVSSSGLKVHMYTVHKQSTRVFACDACDKTYRVRSGLRAHTRAAHTHTRAFCVECRTCYNTTQGLAHHMATHSRHVGESDKRFICDECGAKFVKKCDLQVHINWEHLKIMKHRCTKCSKVFKSNSALTRHVNFVHLKKRPPRNKICDYCGRAFTTQTMLKFHIRTHTGERPLQCTHCPATFAHSAALYTHNKLLHPTNK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01487942;
- 90% Identity
- -
- 80% Identity
- -