Cinc006280.1
Basic Information
- Insect
- Chrysodeixis includens
- Gene Symbol
- -
- Assembly
- GCA_941860345.1
- Location
- OW796096.1:3903482-3909164[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 7.2e-06 0.00055 20.6 0.1 2 23 187 208 186 208 0.96 2 11 0.026 2 9.3 0.3 2 23 213 234 213 234 0.97 3 11 1.6 1.3e+02 3.7 4.3 2 23 241 263 240 263 0.92 4 11 0.011 0.81 10.6 2.0 2 23 272 294 271 294 0.88 5 11 9.4e-06 0.00072 20.2 1.2 1 23 299 321 299 321 0.98 6 11 0.0043 0.33 11.8 2.5 1 23 327 350 327 350 0.95 7 11 0.018 1.4 9.8 0.5 3 20 357 374 355 376 0.92 8 11 4.9e-07 3.8e-05 24.2 0.2 3 23 386 406 385 406 0.99 9 11 2.4e-05 0.0019 18.9 0.8 1 23 412 434 412 434 0.98 10 11 0.0009 0.069 13.9 0.3 2 23 441 462 440 462 0.98 11 11 7.7e-07 5.9e-05 23.6 0.6 1 23 468 490 468 490 0.98
Sequence Information
- Coding Sequence
- ATGGAGATATGTAGAGTATGTTTAACAACAGAAAAAGATGTATTTCCTATTGATGAACTTTTTGTTATTAATTATAACATGTTAACGAACTTAAACGTCACTCTACTGGATGGACTGCCACAATGTTCATGCCAGACTTGTTCAGAAACTGTCAAGAGCTTTATAGAATTTAGAGAAAAGTCTATTACATCAGAAGCCACACTCAGGAATGTTATTTGCTCTGAAGGTGTTAAAGAAGAAAATGAAATAAACATATTAAAACTTGAAAATAAACTGATAGAGGCTGATGCCTTCGAATCTGGAGATAAATCTTTAGAATGTGGTCCTACAACTATTAAAAAAGAAATAAAATTAGAAGAGGAGGCAACACTAGATAATTATGAAATTGACTATGATGAATATGATGATGATTTTATTAAAGATGATGATGATGAAGAAGAAATAAGGCCAATAATTTTGAAATTAAAAAGTACTCGTAAAAAATCAAAGATCAAAAAGAAGTCAGTAAAGAAGCACCATTTAATAGAAAACTTCACTGAAAAGGATACAAACCTATGGTATTGCGGAATGTGTCCCAAAACATTTGACAATCAAACTGACTTAAATACTCATATTGAAGTTCATAAAAACTGTAGGAGATGTGAACTATGCCAGGAAAATCTAAACAGTGCTTCACAAATGTTTGCCCATAGAATAATGCATGTACCAAAAAAACAGCAAGAATGTCACATTTGCGCAAAAAAATACAAATCGTGTTTATACCTAGAATTTCACTATAGAAATGAGCATATTGAAGATGATGACCCGAAACTTAGTTGTAAACACTGTAATACCAAATATTCGACGCCAAAAAAACTGAGCGGACATTACGTACAAGTGCATTCTGATATACGGTTTATCTGCGACGTATGTTCCAAAGGATTCCACAGCCGGGCCAATTTGAAATCCCATATTAAGGTCCACAGCGATAAAAAGTCTTACATTTGTGATCTATGTGGATTCAAGTGTAAACAAAGTACAGGACTAAGGGATCACAAAATAAGAAGGCATTCTGCGGGTAAAGTTATTTGTAAAAACTGCAAACGACCTTTCGAAAACCAATTTGAATTCGACAAACATAAACTGTCTTGCTTTAAGAAGTCGAAGTTAACTTTGTGTCCAATATGCGGGCGACAATTTAATCGTAATGGAAGTCTAGCAAAGCACATGAATGTTCATAGCACAACTCCGAAGTACGAGTGTAAACGATGTCCAGCTAAGTTCAAGACGAAAGATGGTCTGCTTAGTCACTTGAACCGCCACGACGGGAACCGAACCAAGCAGTGTGAATACTGCCCAGCCAAGTTTTATACCGGCGCCGTTCTTATAAAACATCGTCGGACACATACAGGTGAAAAACCATATGTATGCAAGGTGTGTAACAAAGGATTTACAGCAAACTTTAACCTCAAAGTACATATGAAAGTACACGGAGAGTATTTAGTTGTTAAGAAGCAAGAGGAGTCAACTAATGTCATTGATTAA
- Protein Sequence
- MEICRVCLTTEKDVFPIDELFVINYNMLTNLNVTLLDGLPQCSCQTCSETVKSFIEFREKSITSEATLRNVICSEGVKEENEINILKLENKLIEADAFESGDKSLECGPTTIKKEIKLEEEATLDNYEIDYDEYDDDFIKDDDDEEEIRPIILKLKSTRKKSKIKKKSVKKHHLIENFTEKDTNLWYCGMCPKTFDNQTDLNTHIEVHKNCRRCELCQENLNSASQMFAHRIMHVPKKQQECHICAKKYKSCLYLEFHYRNEHIEDDDPKLSCKHCNTKYSTPKKLSGHYVQVHSDIRFICDVCSKGFHSRANLKSHIKVHSDKKSYICDLCGFKCKQSTGLRDHKIRRHSAGKVICKNCKRPFENQFEFDKHKLSCFKKSKLTLCPICGRQFNRNGSLAKHMNVHSTTPKYECKRCPAKFKTKDGLLSHLNRHDGNRTKQCEYCPAKFYTGAVLIKHRRTHTGEKPYVCKVCNKGFTANFNLKVHMKVHGEYLVVKKQEESTNVID
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01487933;
- 90% Identity
- -
- 80% Identity
- -