Basic Information

Insect: Chrysodeixis includens
Gene Symbol: -
Assembly: GCA_941860345.1
Location: OW796107.1:7691567-7701735[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 4.5 3.5e+02 2.3 2.6 6 20 12 26 7 28 0.87

2 12 2.4 1.8e+02 3.2 0.0 2 20 34 52 33 53 0.90

3 12 0.68 52 4.9 0.4 1 12 209 220 209 229 0.90

4 12 2.5e-05 0.0019 18.8 0.1 1 23 391 413 391 413 0.98

5 12 7e-07 5.4e-05 23.7 0.4 1 23 427 449 427 449 0.99

6 12 1.3e-05 0.00098 19.8 0.6 3 23 503 523 501 523 0.97

7 12 0.00046 0.035 14.9 2.5 1 23 539 561 539 561 0.98

8 12 1.2e-06 9.3e-05 23.0 4.5 1 23 567 589 567 589 0.98

9 12 0.00044 0.034 14.9 5.2 1 23 595 617 595 617 0.97

10 12 1.6e-06 0.00013 22.6 0.4 1 23 623 645 623 645 0.98

11 12 0.00037 0.028 15.2 1.1 1 23 649 671 649 671 0.98

12 12 0.0002 0.016 16.0 0.1 1 23 679 702 679 702 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	4.5	3.5e+02	2.3	2.6	6	20	12	26	7	28	0.87
2	12	2.4	1.8e+02	3.2	0.0	2	20	34	52	33	53	0.90
3	12	0.68	52	4.9	0.4	1	12	209	220	209	229	0.90
4	12	2.5e-05	0.0019	18.8	0.1	1	23	391	413	391	413	0.98
5	12	7e-07	5.4e-05	23.7	0.4	1	23	427	449	427	449	0.99
6	12	1.3e-05	0.00098	19.8	0.6	3	23	503	523	501	523	0.97
7	12	0.00046	0.035	14.9	2.5	1	23	539	561	539	561	0.98
8	12	1.2e-06	9.3e-05	23.0	4.5	1	23	567	589	567	589	0.98
9	12	0.00044	0.034	14.9	5.2	1	23	595	617	595	617	0.97
10	12	1.6e-06	0.00013	22.6	0.4	1	23	623	645	623	645	0.98
11	12	0.00037	0.028	15.2	1.1	1	23	649	671	649	671	0.98
12	12	0.0002	0.016	16.0	0.1	1	23	679	702	679	702	0.96

Sequence Information

Coding Sequence: ATGGGTGGCCTTTCTATAAATTGTCCCCTCTGTTGTAATAAAACATTTACATGTAGAGAATCACTACAGGAGCATTTATCAAATGTGTTGGATAACTTGTATTGTCCTATTTGCAATAGTAAATCGTCTTCAGTATTAGAGCTCATAACTCACATAGGTCAGAGTGGCTGTCAACCAGGGCCAAGTCTCCGACATACTATAATATATGAGGACGAAAACGCAGAAGGAAAAAAAGACCAAAATTCAGATGAAACTGAAAATTCTGAAACCAAAGTATATGAACATGAAATTGCAACCAGTAATGCCAACACGAGTTTCTCTGAAGAACATAGCTATGAAGCTCATGTTGATCCAAACGACAATAACAAAATGTATGTGGAATTCATTAGCAAACAGTTGACAAAACCTTGCTTACAAACGAGGGAGCTTAAACTTGTAAAGGAAAATGGAGAGAGCCGGTACATGATTGTGACGCAAGATGAAGGGGAGTTGAATGCCGAAAGTACTATTGTAACAAAACAAAATGTTGATGGTACTATATCTCTGACAACTGTGAAAGATATGAACATAGTAACGGACGCAGTGATAGCAGAGAGTGCTCCACCAGAACAGCCAGTGGAGACGTACAGCTGTAACACCTGCAAAGTATCATTTACATCAGTTATAGAGCATATACAAAACTATCACACTGATCAAGAAGTTGTTGTTGAGGAGCCACTAGAAGAGGGAGCCACAGGACCTTTGCCGATAGAGTATCGGACGGTTGAAACTGAGGATGCTCAAGTGACGACTGACAAGCAGGCGCCGCGCCGCGTCATAACGGACACTGGGGATATTGTTGAAGAACAGTCGATACTCAAAGCAGACGAGATAACACAAAAAGATACTGTTCCTTTAGAAGCCATTCAAAAACGACCACGGAAAGTTATCACGATAGACAAGAATTCGCGAGTCCAACTGACAGTGAAACAAATCGACAAACTATGCAATACCAGTGATAAGGATAAAGCTAAGGCTGCTGTTGAGAAACCGGGTCACTATCACAAGGTAACATTGAAAGAGGTGCAAACGGACTGCGGGTTTGCCATCAAGATGTACCACTGCTTGTCTTGTGAAGTCTGCGTCCCAAATATCGACGAGTTCAAATCTTATCCGTGTAAAACATTAAAATACTCGTGCCCGCAATGTCCAGTGGCCTATGATAACTCGAAATCGTTGAGCGCCCATATGAAAGTACACAAAGTAAAAGCAGACAGTATCGTGGAGGAGCCCATATCGTACGAATGTGAGATATGTGGTACAGTGTTCCCGACAAACAAGTCATTGAAGCTACACAAACGGATGCACGATCCAATTAAATCTCGACCTATAGAAGCACCTGTCGAAAACTCAGACGGTTCAGAAGTGAATGAGGATAAATATCACTGTTTGGTCTGCGACAAGATGATCCCGGAGTTCTACAGGACGATACACCAGAACTCACATAAAACCTCTAATGTAATGAACTGCAGCATCTGTAATAAGAAGTTCAACTCATTGGAGTATCTTGAGATGCATATGAATGTACACAATATGGATAAGGTGCCAATAAGTCAACAAGATGAAAGTCTTCCTTACACCTGTTTATATTGCAACCGGAGGTTCGCCAGGCCGCACGAAAAAGTCAAACACGAAAGGATTCATACAGgtgagaagccgcactcgtgcgagatctgcggcaagtcgttccgcgtgtcgtactgcctcacgctgcacatgcgcacgcacaccggcgcgcggccctacgcctgtccgcactgcgggaagagGTTCAAAGCACACAGCGTATACAACCATCACTTACTAACGCACTCAGAGGTCCGCGCGTACAAGTGCCCTTACTGCCCTAAAGCCTTCAAGACGTCCGTACAACTGGCCGGACACAAGAACTCTCACACGAAACCCTTTTCCTGCCAACATTGTAATCGTCCTTTCGCGTCTCTTTATGCGGTTCGAGTCCACACTGAGACGCACTCGCGTCAGAACAACTTGAAGTTCTCGTGTCAGCTGTGCGGCGCGAGCTACGCGCGGGCCTTCGCGCTCAAAGACCACATCAAACAAGTGCATAAGCAGGAGGATAAGTCGCCGCCGAGAGTTATGGCTACGGACGAAGATTGGAACCCTGACACGGATTCGGAAGGAATACAGGAGCTTAACAAAGATTTAACGCAAGAGATATCTGACCTGGGGATGAATGAAAGTGAGCTTATTGCTCCTTAA
Protein Sequence: MGGLSINCPLCCNKTFTCRESLQEHLSNVLDNLYCPICNSKSSSVLELITHIGQSGCQPGPSLRHTIIYEDENAEGKKDQNSDETENSETKVYEHEIATSNANTSFSEEHSYEAHVDPNDNNKMYVEFISKQLTKPCLQTRELKLVKENGESRYMIVTQDEGELNAESTIVTKQNVDGTISLTTVKDMNIVTDAVIAESAPPEQPVETYSCNTCKVSFTSVIEHIQNYHTDQEVVVEEPLEEGATGPLPIEYRTVETEDAQVTTDKQAPRRVITDTGDIVEEQSILKADEITQKDTVPLEAIQKRPRKVITIDKNSRVQLTVKQIDKLCNTSDKDKAKAAVEKPGHYHKVTLKEVQTDCGFAIKMYHCLSCEVCVPNIDEFKSYPCKTLKYSCPQCPVAYDNSKSLSAHMKVHKVKADSIVEEPISYECEICGTVFPTNKSLKLHKRMHDPIKSRPIEAPVENSDGSEVNEDKYHCLVCDKMIPEFYRTIHQNSHKTSNVMNCSICNKKFNSLEYLEMHMNVHNMDKVPISQQDESLPYTCLYCNRRFARPHEKVKHERIHTGEKPHSCEICGKSFRVSYCLTLHMRTHTGARPYACPHCGKRFKAHSVYNHHLLTHSEVRAYKCPYCPKAFKTSVQLAGHKNSHTKPFSCQHCNRPFASLYAVRVHTETHSRQNNLKFSCQLCGASYARAFALKDHIKQVHKQEDKSPPRVMATDEDWNPDTDSEGIQELNKDLTQEISDLGMNESELIAP

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01221837; iTF_01487950;
90% Identity: -
80% Identity: -