Cinc021000.1
Basic Information
- Insect
- Chrysodeixis includens
- Gene Symbol
- -
- Assembly
- GCA_941860345.1
- Location
- OW796118.1:5924146-5937659[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 25 0.017 1.3 9.9 0.1 1 23 47 70 47 70 0.96 2 25 1.7 1.3e+02 3.6 0.1 3 23 98 118 96 118 0.94 3 25 0.24 18 6.3 1.8 1 23 140 162 140 162 0.98 4 25 2.9e-05 0.0022 18.7 1.0 1 23 166 188 166 188 0.98 5 25 5.5 4.2e+02 2.0 0.3 1 22 193 214 193 216 0.76 6 25 0.16 12 6.9 0.4 1 23 222 245 222 245 0.89 7 25 0.0075 0.58 11.0 0.2 1 23 294 316 294 316 0.95 8 25 1.9 1.4e+02 3.5 0.4 2 21 340 359 339 362 0.89 9 25 0.42 32 5.6 2.0 1 23 441 463 441 464 0.92 10 25 0.14 11 7.1 0.0 3 20 488 505 486 509 0.92 11 25 0.0076 0.59 11.0 3.8 1 23 531 553 531 553 0.96 12 25 0.00016 0.012 16.3 0.6 1 23 557 579 557 579 0.98 13 25 0.36 28 5.8 0.1 1 23 584 607 584 607 0.92 14 25 8.6e-05 0.0066 17.2 2.1 1 23 613 636 613 636 0.98 15 25 0.033 2.5 9.0 1.3 1 23 643 666 643 666 0.95 16 25 0.56 43 5.2 0.7 1 23 722 744 722 744 0.94 17 25 0.087 6.7 7.7 0.2 1 23 856 879 856 879 0.96 18 25 1.4 1.1e+02 3.9 0.1 2 23 904 926 903 926 0.91 19 25 0.35 27 5.8 0.1 1 23 950 972 950 972 0.96 20 25 0.00041 0.032 15.0 0.2 1 23 976 998 976 998 0.98 21 25 0.00013 0.01 16.6 0.5 1 23 1003 1026 1003 1026 0.96 22 25 0.0042 0.32 11.9 0.3 2 23 1033 1055 1033 1055 0.93 23 25 0.094 7.2 7.6 7.4 1 23 1062 1085 1062 1085 0.96 24 25 7.2e-05 0.0055 17.4 4.7 2 23 1092 1113 1091 1113 0.96 25 25 0.00011 0.0087 16.8 1.3 1 23 1119 1141 1119 1141 0.98
Sequence Information
- Coding Sequence
- ATGCGCCGGCGACGACGCGCCAACAACGAACTGCCCGAAGAATCGGAGAAACGAATCTCAAAAACTATGATGCGACGAAACGCGATCATTCTTCTCGAATGTTCCACGGCCTGGGCCTTCAGATGGTTCCATAGCGCGTTCTTCTGCTCATACTGTGAAGCTAAATTCGTAGACATACCTTTACTACGCGAACATGTAAAAATAAATCATCTTAACGAACCCCCTACCAAGAGAATTTTCTCGAAACTTACCGAAAATAACATGGTGAAGGTTGATGTAGCTGAACTTGCTTGCAGATTGTGTAGTAGAATTCTAAATGGTATAGACTCTTTGAAAGACCATCTATTAATACATGGGAAGACATTGAACGTTGAATACAGTGATGGCGTCCTCCCTTTTAAGTTAGATGAGGAAAGCTTCACTTGCCAAATATGCTTTGAACAGTACTTGAGTTTTAGCAAAATGAACGAACACATGAATACTCATTATCAAAACTACATTTGTGACTCTTGCGGCAAAGCCTTTGTCTCTAAATCTAGGTTTAGGAAACACGTGCAATCGCATGAAAAAGGGAGTTTTCCTTGTGGGGAATGCGATGAGGTTTTAGAAACCAGGGCGGCGCGTATGTGCCACAGAATGCGTGTACATCGGAAAGGCGTCAGATACGCTTGCCCAAGATGCCCAGAACTGTTCACTACCTATCACACTAGAGCAAAACATTTAGTAGAAGCACACGCGCAACAGAGAAAAGAGTATTACTGGCTCATCGACCTCAGACTTAAATGGAGACCGAAACGCAAGTACAATGATCACAGGGATAATGCCGCCATTATCATAGAGTCCTCGAACGTTTGCCCGTTCCGATGGAAACGAGGCTCGTTCACTTGCGCCTACTGCCCACAGTCCTTCGGCGACTTTAGCGCGGTCAAATCCCACGTTACCGAACACACTAATAAAATCGAAGCGATGCGTTACGCACGAACCCTCGCTAATATAAAAGTCGATGTCACCGATTTAAAATGCGAATTGTGCCTTACGGAATGTGCCGATTTAGATTCTCTAAGCGAGCATTTAGTTGATAAACATAATAAACCTTTAGTAAAAGAATACGGATTAGGTGTAACGCCATTTAATTTGGCAGGAAGAAAAACACAGGAAACTGAGATTAAGACCGAGGTGGAGTCCGATTCTGAGTATAACACACCTCCATTGATATCAACAGCGAGGGAGGGATACCAGAAACGGGCAATCTTCAGGAAAAACATCTCCACAATCATGGACTATTCAACCGCATACCCTTTCAAATACAGAAAAGGAACGTACCTATGTTTCTTCTGCAAAAACACATTCATAGAACCCGAAAAATTAAGGGAACACAATCAAATACATCATTCAGAAGTCAAACAGTTGCTAAAACCGAGGAAATATGAACCGCTAAAAATGGATTTTGCGACGACGATATGCAAAATTTGCGGAGTACAACTCAATGATTACGCTATGCTCAAAATACATATGCCTGTTGAACACGGAAAGATTATCGACTGCACTTATGGGGATAGCGTACTTCCATACAAATTAAGCAAGGATGAACACAGCTGTCAAATTTGCGGGAAGACCTACGAAATGTTCTTAAGTTTACACAAGCATATGAACGATCATTACGAACACTTTATATGTGAGACTTGCGGGAAACGATTTGCCACTTCACAGCGAATGGTGAACCACGCTAGGACTCACGAAAGGGGAGACTTTCCTTGCAAGCGATGTGATGATATATTCCCATCCTACGCTTCTTTATACGCACATAACGCGAAAATCCATCGGTCCAACAAACGGTATAAATGCCCGATTTGCGACGAAAAATTCGCTTCTTACAAACATAGATTGAAACATCTGAATACTATTCATGGAGAAAAAACTGCAGTGTTCCCTTGCCCGTCTTGTCCTAAAGTTTTCGACCTGTGCAGTCGGAGGACAGCTCACATACGATTTCAGCATCTTCAAgaaaggaaccacgtttgctcaatatgcgGTGACAAATCACCGCACGATAAAGTTTCAAAAACAAAATCAAAATCTGCCGTCAGGGCGATGATAAGGAAACAGACTGTCGCGTTACTCGAGGCGTCCACCATCTGTCCATTCCGATGGATCAACAGTAAATTCGTGTGCTTCTATTGTACCGACAAGTTCTCCGACCCGGAGATCTTGAGGCAACATACTACCGAACACGTACTAACAAGAACGGAATTGCCGGAGACAAATCGAAGAGTCGTGCCTTTATTCCAAGTCGCCTACGACCGGAGTCTGTGTAGACCTCTTGGCACTGTCCTAGACTTCAGTAGGCTGAAGCTAAAGAGCTTAAAGACTATGAGAACTCCGCCAGTGAATAACTACAGTCCATCTCGAAGCCCCTCACCAGTTTACCCGGACACACCAGTCTTTGTTGAACAAGCTTCTGATCTAATACAGCCAAAAGTTAGAAAGAATCCCGATATCAGACAGAATGCTTTAATTGTGTTCGAGTTTTCAACTGTCTACCCATTTGTGTACGGGAATAATAAGTTTAAGTGCTTCGTGTGTGCGCAACCGTTTTTAGACATCAATTTGTTAAAAGCTCATATGAGAGAAACTCACACATTTGCACCGTTGAAGCGTTTAGTCAATAATAGAAGGGAAAGCGTTCTGAAAGTCGATGTGAGTGATATTACTTGTAAATTGTGTACTGAGAGGCCAGGTAACTTGGTTGAATTAAAGCGACATCTCAAAGAAGTTCACGACAAACCAGTGGATCTTGACATCCAGGATAATTTGATACCGTTCAAACTAGATTTGATAGACGAATCGTATCGCTGTGTTATTTGCGAACAAAACTTCATCAAAGTTCGGATTCTTGTTATACATATGAGTGTGCATTTCAATAACTACAGTTGCGAGATTTGTGGCTCAGGGTTTATGACTTTAAGGCTTTTGAAAAAGCATTTAGAGGTGCACGATTCCGGAAACTTTCCCTGTGATCGATGCAATAAAGTATTCAGCACACCTTACAAAAGAACTTTACATATACGTGGCGTGCATCTAAAACAATGCCCGAGACGCTGTCCTATCTGTCCGGAGCGATTCAACTCAAACTACAAACGGACTATACACTTGCAAGACGTCCACAACCAAGCAACGAGAGTCCATAAATGTAAGACATGTGGACGAGGCTTCAATTTGAAGTATCATCTTATTTGTCACACGAGATCGGTGCACCTACAAGAACGGAATCAACAGTGCGATGTTTGTCATCAAAGGTTTTGTAACAAGGAGTCTTTGAAGCGACATATGGTGATTCATACTGGGGAGAAGAATCATAAGTGCGATGTGTGTGGTGCGGCGTTTTTGAGGAGGAAGAATTTGAAGGACCATTTGAGAATGCATGATTTGGGGTAG
- Protein Sequence
- MRRRRRANNELPEESEKRISKTMMRRNAIILLECSTAWAFRWFHSAFFCSYCEAKFVDIPLLREHVKINHLNEPPTKRIFSKLTENNMVKVDVAELACRLCSRILNGIDSLKDHLLIHGKTLNVEYSDGVLPFKLDEESFTCQICFEQYLSFSKMNEHMNTHYQNYICDSCGKAFVSKSRFRKHVQSHEKGSFPCGECDEVLETRAARMCHRMRVHRKGVRYACPRCPELFTTYHTRAKHLVEAHAQQRKEYYWLIDLRLKWRPKRKYNDHRDNAAIIIESSNVCPFRWKRGSFTCAYCPQSFGDFSAVKSHVTEHTNKIEAMRYARTLANIKVDVTDLKCELCLTECADLDSLSEHLVDKHNKPLVKEYGLGVTPFNLAGRKTQETEIKTEVESDSEYNTPPLISTAREGYQKRAIFRKNISTIMDYSTAYPFKYRKGTYLCFFCKNTFIEPEKLREHNQIHHSEVKQLLKPRKYEPLKMDFATTICKICGVQLNDYAMLKIHMPVEHGKIIDCTYGDSVLPYKLSKDEHSCQICGKTYEMFLSLHKHMNDHYEHFICETCGKRFATSQRMVNHARTHERGDFPCKRCDDIFPSYASLYAHNAKIHRSNKRYKCPICDEKFASYKHRLKHLNTIHGEKTAVFPCPSCPKVFDLCSRRTAHIRFQHLQERNHVCSICGDKSPHDKVSKTKSKSAVRAMIRKQTVALLEASTICPFRWINSKFVCFYCTDKFSDPEILRQHTTEHVLTRTELPETNRRVVPLFQVAYDRSLCRPLGTVLDFSRLKLKSLKTMRTPPVNNYSPSRSPSPVYPDTPVFVEQASDLIQPKVRKNPDIRQNALIVFEFSTVYPFVYGNNKFKCFVCAQPFLDINLLKAHMRETHTFAPLKRLVNNRRESVLKVDVSDITCKLCTERPGNLVELKRHLKEVHDKPVDLDIQDNLIPFKLDLIDESYRCVICEQNFIKVRILVIHMSVHFNNYSCEICGSGFMTLRLLKKHLEVHDSGNFPCDRCNKVFSTPYKRTLHIRGVHLKQCPRRCPICPERFNSNYKRTIHLQDVHNQATRVHKCKTCGRGFNLKYHLICHTRSVHLQERNQQCDVCHQRFCNKESLKRHMVIHTGEKNHKCDVCGAAFLRRKNLKDHLRMHDLG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -