Cinc014358.1
Basic Information
- Insect
- Chrysodeixis includens
- Gene Symbol
- clz9
- Assembly
- GCA_941860345.1
- Location
- OW796107.1:6594159-6597071[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2.2e-08 1.9e-05 24.6 0.0 1 41 8 47 8 50 0.85 2 2 7.4 6.4e+03 -2.7 0.0 24 34 908 918 908 919 0.87
Sequence Information
- Coding Sequence
- ATGGCTCCGAGAAAGAATTATACTCCCGACCAGCTAGAAAAAGCCGTAGCAGCTGTAAGAAATGGCGAAAAGATTGCAGTTgctgcgaaacgttttggagtacccaggattacacttcatgacaaaatttcaggaaaaacaacaatgggttgcgctatggggccgagcacagttttaactaaaggggaagaagacattttggaaaagtggatattagcgttatctgctagacatattccgctgacaaaagatgcgctactggacagtgtgcaaaaaataatacttgatcaaaacagaccaaatccttttacaaacaataggcccagcaagaagtggtttcagtcgttcatgaagagacatccaaacttagcacaaagagtgccagacaacttgtcaagagctcgagacaatgtatctgaaaagaacatcaggacttggtttactgaggtcgaaagttatttggatgaaaataactttaaaactattttaaacgacccacacagaatattcaacgcagatgagaccgcgttctttttgtcacctaaacctggtcgtgtactcgccaaaaaaggagataaacacccatacagtagctgcggtgatgaaaaggacaatctcactgtcctaataactggaaatgcagctggagacctagcgcctccaatgataatatttagttacgaacgaattccttcaactattgctgtgagtgttcccgatgaatgggcaataggcaaatcggagagtgggtggatgtgtagccgcacgttctatgaatacgtgactaatgtcttcaatccttggttagagcaaaaaaatattgaaaaacctgtcttgttctttgtggatggccacaaatcacacctgacgcttcatttatcaaattattgctccgaaaacgggattgtagttgttgccttgtacccaaattctacgcacattctacaaccgatggacttatcagtattcagaccactcaaagctcattggaaaaaagccgtgacgcaatggaaaatggaaaaccttggcaaaaatcttcgaaaagagaactttgctccagtgttgcaaaaagctctcacaaatataacaaaagattgtgtccaaaacggattccgagcgggtggtctttttccatttggtcctgaTTACATTGATATGTCTAAAATATCTAAAACTGATATAGAAACCACAACTAAAACCAATCCAATGCAGAAAGAATTTATGAAGTATTTAGAACACGAAATCGTAAACGTATTCTCAGCTCAAAAGTTACAGCAATTCAATAAATTATACTTTGAAAATAGAAATACACTGGAAACAGAAATCCCTGATGAAGACCAGGCTTTATATTTGATTTGGGCCAAAAACAAATCCGAAGACGCGTTGTGTCATTCAAGTTCGGTGGATGTTCCTACAACGTCAGATACGGAACAGGCGAGGTATCCGTCAAATGATGTAACCACTACTCAAACGAACGATATTGTTTTAACCAATGAACCGTCAGATGCAATTAACGAAGTGGCAAAAGAAACTGAAGAAATACACTTTAACAACATGCAGCCGGAAAACCTACCAAAAGATGGCAATTCCAATGACTTAATAGAAACTGATTCATCAGAACATAACTCTAAGAAGTCAATAGATAATACTCACAGTTTGCCTGGAGTAAAAACACCCACCACTGATGATAAAACATTTCCATCTAAGTCCATATCTGATTCCATTAATTCGCCTAAGGTGATAGTAGAATATCTTCCTCAAAAACCAAACTATAACGTCAGGCATGATGCTGTTACCCAACCTCTTTCACTGCCGGAACGTTTTTTACCAACCGATTTATCTAAAGATCCTGTAATGCAACAACCTAACAACGTCCCAAAGCCTGATATTGTTTCTAGCCCACCTGTTTTAATACCGGAACTTACTTCACTCATCGGTTCTGCTGAAGTAACAGGAGATCCTCAAAGGCAACAACCTGATAATAACTCCTCAGTTAACATATTACTCGATCAAGCACTTTCACCACCGATTCCTTCATCTTCATCCAGTTGTCTCGAAGCAATAGAAGGTAACCTACCTCAACAACCTATCATAAGTACTATGGAACCGCAGTACAAAACACCACAAAAGTCTTTGGAAAAAGTTTTGGGAGTGATTGTTCCATCTCCTTTTAAAAGGAGTTTGTTTTGGCCGGAAAATAGGATGGATAGCAACAAAAAGAGAATAAAACGAGAGAAAATTCCATCAACAGTAACAAGTAAGGCTTGGAAAGAATATCATGAGAAAAAGGAAATCGAGAAAAATAAAAAACAACAAGAAAAAGACGAAAGAGCTAGACGTAGAATAGAAAAAAAGAAATTAAAAGAGCAGTTAACCAAAGAAAAGAACAATAAAAACAAGACTAAGAAAACTAAGAAAAATGTTCAAGAAGATTCAACTTCAGAAGAGTCAGATGTGGAGATTTCGTACGCTGAAAGTGATATTAGTTATGATTTAGAAGATGACAAAGAGAAAGAACCAGAAAGAAAAAAAATAACAAAAACAAAGAATCAGATAGAATGTGATTCTATAGACTCGGATTTAGAAAATTTGCCCTTAAGTAAGATTGCATCTTTAAAAGCAACGAAGCCAAATAAAAGCAGGAAATTTTCGATAGGAAATTTCGTTATAATTAAGTATGAAGGGGAGTATTTTCCTGGTAAGATAGAAAGCTTGCGAAAGAACGAGTACGAAATAAGTACAATGACATTAAGTACAGGAAATTCTTTTAAATGGCCTAACTTGCCCGATAAAATTTTCTATAAGCTCAATGAAATAATGGAAGTGATAAGGGAACCTATATGTTTAAACAAAAGAGGGTTTTATAGAATCCCAGAAATGGATAAATATTTACCAAATATGTATGGCTTTTAA
- Protein Sequence
- MAPRKNYTPDQLEKAVAAVRNGEKIAVAAKRFGVPRITLHDKISGKTTMGCAMGPSTVLTKGEEDILEKWILALSARHIPLTKDALLDSVQKIILDQNRPNPFTNNRPSKKWFQSFMKRHPNLAQRVPDNLSRARDNVSEKNIRTWFTEVESYLDENNFKTILNDPHRIFNADETAFFLSPKPGRVLAKKGDKHPYSSCGDEKDNLTVLITGNAAGDLAPPMIIFSYERIPSTIAVSVPDEWAIGKSESGWMCSRTFYEYVTNVFNPWLEQKNIEKPVLFFVDGHKSHLTLHLSNYCSENGIVVVALYPNSTHILQPMDLSVFRPLKAHWKKAVTQWKMENLGKNLRKENFAPVLQKALTNITKDCVQNGFRAGGLFPFGPDYIDMSKISKTDIETTTKTNPMQKEFMKYLEHEIVNVFSAQKLQQFNKLYFENRNTLETEIPDEDQALYLIWAKNKSEDALCHSSSVDVPTTSDTEQARYPSNDVTTTQTNDIVLTNEPSDAINEVAKETEEIHFNNMQPENLPKDGNSNDLIETDSSEHNSKKSIDNTHSLPGVKTPTTDDKTFPSKSISDSINSPKVIVEYLPQKPNYNVRHDAVTQPLSLPERFLPTDLSKDPVMQQPNNVPKPDIVSSPPVLIPELTSLIGSAEVTGDPQRQQPDNNSSVNILLDQALSPPIPSSSSSCLEAIEGNLPQQPIISTMEPQYKTPQKSLEKVLGVIVPSPFKRSLFWPENRMDSNKKRIKREKIPSTVTSKAWKEYHEKKEIEKNKKQQEKDERARRRIEKKKLKEQLTKEKNNKNKTKKTKKNVQEDSTSEESDVEISYAESDISYDLEDDKEKEPERKKITKTKNQIECDSIDSDLENLPLSKIASLKATKPNKSRKFSIGNFVIIKYEGEYFPGKIESLRKNEYEISTMTLSTGNSFKWPNLPDKIFYKLNEIMEVIREPICLNKRGFYRIPEMDKYLPNMYGF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00212400;
- 90% Identity
- -
- 80% Identity
- -