Cinc017319.1
Basic Information
- Insect
- Chrysodeixis includens
- Gene Symbol
- clz9
- Assembly
- GCA_941860345.1
- Location
- OW796111.1:8061743-8063784[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.3e-11 1.1e-08 34.9 0.0 1 40 16 56 16 59 0.92 2 2 5.7 4.9e+03 -2.3 0.0 21 30 331 340 331 340 0.82
Sequence Information
- Coding Sequence
- ATGGTGCGGACATATAAACCAAAAAACGCAACTAGACAACTTGTGGATGAAGAGTCCATGCAGGCAGCAATACAGGACGTTATGCAAGGAGTATTATCATATAGAAAAGCTGCGGACAAGTATAATTTGAAATTGTCGACTTTAGAAAGCCGAGTAAAAAAATGCAAGAATAGCAATGATGCTGAAGGGTCAAGCAACCGTTCATTTGACTCTAAATATACAAGTTTCCAAGTCTTTTCTATCGAAGAAGAAAAAATGAATTTGAAATATCCAGCAAAGTGGGAAGAAACTAAGATGGCTGGGAAGGAATGGATGTATGGTTTTCGCAGAAGAAACCCGGAACTCAGTTTACGCAAACCTGAAAATACAAGCGCTGCAAGATCTTTTGCGTTTAACAAAACTTCAGTTACCAAGTTTTATATCAATTTGAAGACAGTGTTGGAGCGACATCCATTAACTGCTGATAGAATCTTTAATATCGACGAATCCGGTGTATCTACCGTTATAGCTACTCCCAAAGTCTTGGCTCCAAGATGTCAAAAACAAGTCGGACAAATTGTATCAGCTGAAAGAGGCGAGCTCGTAACTTTTGGCGGTATTATATCTGCCAGTGGAAATACCATTCCTCCACTTTTCGTGTTCCCACGCGTTCATTATAAAGATAATTTCCTCGAAGGAGCACCCGAAGGAAGTCTCGGCGCTGCTAATAAAAGTGGCTGGATCAATAGCAATATATTCGTCTCTGTTCTTAAACATATCCAGAAGCATACACTCTGCACAAAAGATAACCCCATATTATTGTTGTGTGACAATCATGAAAGCCATATTTCTCTCGAAGCCATCAACTACGCCAAAGAAAATGGTATAATTTATCTATCTTTTCCACCGCATACATCTCACCGCCTACAACCACTTGATGTGGGAGTCTTTGGACCATTTAAATCAAAGTTGAAGATTGCTTTCAATAATTGGCATACAATGAACCCAGGCAAAGCATTGACTATTTACAATATTCCAAAGCTTGTGAAAATTGCGTATTTTGAATCATTCACGGCAAAAAATATCACAAGCGGGTTTAACAAACCCGGGATATGGCCTCTTAATGAATTAGCCTTTAGTGACGAAGATTTTGCTCCAACTGAGGTTTATACATCCGGTAACGTGGAAACTGTTCCTCTTCGGCAGCCAGCTGTCTCTGATATCTGCCATCCCTCTACTTCAAGAACACAAGATGTCTTGGAGGTTCCGCCAGAATCTACAGTACAAACTATTATCTCTCCACTGATAACTTGTGAACCAGATGCTTTGAATAATTCACCAATCCATCAAATAGTAGCTTCTTTGAAGACTGCTTTGACACCAGAGGCAATTCGACCCTATCCGACTGTTGTAAGAAGTAATAAAACAAACAAAGGACGACGGCCAGGAAAATCACGTATTTATACTGACACACCCGAAAAAAAGCTAATTGAAGAGAAACATAATGAAAAGCAATTGAAAAAGCTAGAACAGGAAAGAAGGGCTAGGGCTAGAGAAATGAAACGTAGTTTAGTTAACTTTAATTTAAAAGAGAAAAAGAGAGCTAAAATATTAGAAAGTAATGAATCTGATTGTGATGGATCTGATATAAGCTTTCAAGAGAGTTCAACTTCCACCATAGATGAAGATGAAACCGAGCATGAAAATTTTGAAATGGACAGAAGCCAATTGACAGTTGATGTAATACCAGAAAATATTAAGAACGGATCGTTTATTTTAGTGAGATTCCCTAAGAAAAAAAGTATTATTTACTATGTAGGAAAAGTTGTCAGTCACTATAGTGAGACTGAATTTAAAATATCTTATCCAAGAAAGAAGCCAGGCCATTCGTGGACATTTATTTTCCCTAATGTTGAAGATATTCATACTGTTTATATCTGA
- Protein Sequence
- MVRTYKPKNATRQLVDEESMQAAIQDVMQGVLSYRKAADKYNLKLSTLESRVKKCKNSNDAEGSSNRSFDSKYTSFQVFSIEEEKMNLKYPAKWEETKMAGKEWMYGFRRRNPELSLRKPENTSAARSFAFNKTSVTKFYINLKTVLERHPLTADRIFNIDESGVSTVIATPKVLAPRCQKQVGQIVSAERGELVTFGGIISASGNTIPPLFVFPRVHYKDNFLEGAPEGSLGAANKSGWINSNIFVSVLKHIQKHTLCTKDNPILLLCDNHESHISLEAINYAKENGIIYLSFPPHTSHRLQPLDVGVFGPFKSKLKIAFNNWHTMNPGKALTIYNIPKLVKIAYFESFTAKNITSGFNKPGIWPLNELAFSDEDFAPTEVYTSGNVETVPLRQPAVSDICHPSTSRTQDVLEVPPESTVQTIISPLITCEPDALNNSPIHQIVASLKTALTPEAIRPYPTVVRSNKTNKGRRPGKSRIYTDTPEKKLIEEKHNEKQLKKLEQERRARAREMKRSLVNFNLKEKKRAKILESNESDCDGSDISFQESSTSTIDEDETEHENFEMDRSQLTVDVIPENIKNGSFILVRFPKKKSIIYYVGKVVSHYSETEFKISYPRKKPGHSWTFIFPNVEDIHTVYI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01034477;
- 90% Identity
- -
- 80% Identity
- -