Cinc000579.1
Basic Information
- Insect
- Chrysodeixis includens
- Gene Symbol
- lolal
- Assembly
- GCA_941860345.1
- Location
- OW796090.1:4286487-4293073[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.5e-16 1.3e-13 50.7 0.0 1 42 307 349 307 352 0.94 2 2 9.9 8.5e+03 -3.1 0.0 22 33 395 409 394 409 0.67
Sequence Information
- Coding Sequence
- ATGTCTCAGCAGTACAGTTTACGATGGAACAACCACCAGCCGAACTTCATCAGCATGTTCACAAGTTTGCTGAACACGCAGACGCTGGTGGACGTGACTCTGTCTGCGGAGGGCAAACAGCTGCTGGCACACAAGGTCGTGCTCTCGGCCTGTAGCACGTATTTTCAAAGCTTGTTCGTGGACAATCCATCTCCACACCCAATAGTTATACTAAAAGATGTCACATATGCGGACCTCCGCACAATGGTCGACTTCATGTATTGTGGCGTGGTCAACGTGACCGAGGAACAGCTCCCAAAAGTGCTGGACACTGCAAAATTACTTAAAATAAAGGGGCTGACAGAGATGCCGGACTCGACGTCACTGACCCGCGCACAGTCGGATCGGAACGGCACGGAGCAAGCGGACTCATTAGACTCGCAGAGGGAATCGCCCGCCGAGTCGTCCACTAAGAAAAAGAGACGCAGGAAAAGCTCGTCGGGTTCGAACGCGGTTATGGAGAGCGATAGCCGCGCGGAGGCGAGCGCTCAGACCGTGGAACCCATCACCTTTAGCAGCGTACCGCAGCGACGCTACAACGAGATCCGCACCATCGACAACTCGCAACAGACACAAGATACACCGGAAAGCGGGGACCAGTCCGAGCAGATGGTGGACAACCCACAGATGCAAGCGCAAGGAGGCCTATGGACAGCGGTCGAAAATTCCTATCCGCGGTACACGAACGCGTGCCTCGGGGCGGGCATGCTGCAGGGCGAGCCGGGGATGGGCTACATCGCGAGTGTGGGCGACATGACGCAGTACTCGGCAGCAGGCAGCGAGCTCCCGCACGCGTCGCCCGGCACCTCCGCCGCGGAGGGCAAGCCCGAGCCCCGCGCGCGCCTCGCCGCCCGCCGCAAGCGCGCCACCAACCCCCAGTCCGAGGAGAACTTCCAGCGCGCGCTCGAGGCCGTGCGCTTCGGCGGCATCGGCTTCTGCAAGGCCGCCAGGCTCTTCGGCGTCAACAACAGGACGCTGTGGCTCGAGTACAAGAAGAAGGGCTACCCCAACAACAGACCCAGCATCAGGAGCAGGATCAAGAAGGAACACAGGATGCCCTCGCCCAAGTTCAAGCAAGAGGAGTCCCAGCATCAGATGTTAGTGTGCGCGCAGCAGCAACTCCCAACCGCGGGCTATGTAGAGGCCGCGCAACACTTCCCGCTGCAGGGCGTGCCGCAGAACACCATCAACCTTCTGGGCACGTCCGTCACCTTCAGCAACATCCAATAG
- Protein Sequence
- MSQQYSLRWNNHQPNFISMFTSLLNTQTLVDVTLSAEGKQLLAHKVVLSACSTYFQSLFVDNPSPHPIVILKDVTYADLRTMVDFMYCGVVNVTEEQLPKVLDTAKLLKIKGLTEMPDSTSLTRAQSDRNGTEQADSLDSQRESPAESSTKKKRRRKSSSGSNAVMESDSRAEASAQTVEPITFSSVPQRRYNEIRTIDNSQQTQDTPESGDQSEQMVDNPQMQAQGGLWTAVENSYPRYTNACLGAGMLQGEPGMGYIASVGDMTQYSAAGSELPHASPGTSAAEGKPEPRARLAARRKRATNPQSEENFQRALEAVRFGGIGFCKAARLFGVNNRTLWLEYKKKGYPNNRPSIRSRIKKEHRMPSPKFKQEESQHQMLVCAQQQLPTAGYVEAAQHFPLQGVPQNTINLLGTSVTFSNIQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00327194;
- 90% Identity
- iTF_00327194;
- 80% Identity
- iTF_00327194;