Ccun013337.1
Basic Information
- Insect
- Chouioia cunea
- Gene Symbol
- lola
- Assembly
- GCA_030064505.1
- Location
- JAOPFQ010000005.1:26064406-26077018[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.063 5 7.7 0.8 1 19 347 365 347 368 0.94 2 13 1.3 1.1e+02 3.5 0.2 1 12 377 388 377 391 0.81 3 13 0.00049 0.039 14.3 1.2 1 21 444 464 444 465 0.95 4 13 0.98 78 3.9 0.6 1 15 473 487 473 490 0.83 5 13 2.3 1.8e+02 2.8 0.9 1 19 594 612 594 615 0.80 6 13 0.0088 0.7 10.4 3.8 1 21 623 643 623 646 0.95 7 13 0.075 5.9 7.4 5.5 1 21 653 673 653 674 0.94 8 13 0.0088 0.7 10.4 0.5 2 23 682 704 681 704 0.96 9 13 0.015 1.2 9.6 1.7 1 21 713 733 713 734 0.90 10 13 5.6 4.5e+02 1.5 4.4 2 23 1005 1027 1004 1027 0.94 11 13 0.79 63 4.2 4.7 1 20 1036 1055 1036 1057 0.88 12 13 0.0032 0.26 11.7 8.3 2 23 1065 1087 1064 1087 0.95 13 13 0.00037 0.029 14.7 1.1 3 21 1102 1120 1100 1121 0.95
Sequence Information
- Coding Sequence
- ATGATATCACTGCTACGCCGGAACTACAAACCAAACAACAGGAAGCAACGCCCTTTGACCCGTAGCCGTACtgatcaacaacagcaacaacggcaacaacagcaacagcaacaacaacagcaacaacagcagcaaccaGCACAGGAGCAGAACCTGCCACAGGGACAGCCAACACCAATGGAACAGGACCCAGCGCAGGAACAGCAACCGCAGCaacaaaagcaacaacaaaagcAGCAAAATAAACTGCAAGGCAGGGGGCAAACCAGGCCGCAAAACAAGCCGCAAAGCAAGCCGCAAAACAAGCCGAAAAGCAAGCAGTTAACCGAGCAGCAAGAAACAGAGCAACTGTTGCACGAACAACTACAGCAACACCTGCAACAGCAattacagcagcagcaacaacagcaacaacagcaacttCACCTACCAAATCGTCTCGAATTGGAAATTCAACCCATCGACGACGATGCTTCGTCTTCTCGCGATAGCATTGCTTTTCCCGCATCTCTCGGTCTCATTCCACGCATTCAAGCTGAACAGCAACAATTGCAgctgcaacagcaacagcagcaactacagcagcagcaattgcaacaacagcaactacagcagcagcaacaacaacagcagaagcagcagcaacaacagcagaagcagcagcaacaacagcaaaagcagcagcaacaacagcagaaacaacaacaacagcagcagaagcaacagcaacagcagcagcaaaagcaacaacaacagcaacagaaacaacaacagcagaaacaacaacaacagcaacagaaGCAACAACAGCCGCAACAaccacagcaacagcagcaacaaccaCAACAGCCGCAACCACAGCAGCCACAAccacaacagcagcaaccacaacagcaacaagagcagcagcaacagcaacaaccaCAACAACAACTGCAGCAGCGTGCTAAACAAGAAAATGCAGAAGAAGGTGAAGAACAACAGCAACCAGAACAGGCTCAGGCAGATGCAGCTCAGGAACCCAGTCTAGAACGTGAATTTAGGTGTCGATTCTGCGGTAAAGGTTACAGATGGAAGAGTACTATGAGGAGACACGAGAGTCTCGAATGTGGAGATAAACCTCCATCTTTTCAATGTCCCGATTGTCCTTATAAAGCTAGACAAAGAGccGAGGGTATTCCCCTCACCAACCTAACGTCGTCGACATCTTGGGCATCGTGGGGTGGACCGACGATTATTTGGAGAACCGCAAGTAGTATAAATCACGAGTTAAACAATCAAGAATCAAACAATCAAACGGAATTAAATAATCAGCAAGAATCGAGAGATTTCATTTGCTACGATTGTAATAGAAGCTACAAGCTTAAAAGTAGTTTGAGAAATCATAAAAGGTGGGAATGCGGTAAAGAACCACAATTTCAGTGTCCCTATTGTCAATATAAAGCTAAGCAAAAGATACACGTAGaaaaaggCATGAAAAGGTCACGAAGATTTATCAAAACTAACGGGCCAAAACGAGACTACAAAAAAGACATTGCTGAAATAATCATagATGACGATACGAAAACAGTGCGTGAAGTTCATTACGTTAGAGAGGAAATGATTAACTCGTCGGACTCGTCGAACGACGATAACAATGTAATTGAGGATAGCCACGATAGACTAGACCTCACAGATCAAAGCTTCGAATTGAGCTACTGTCGGAATTGTAATCAAAGCGAGAGGCTTGTACATTGGGAGAAAGATCAACGCTGCAACACGTGTAATTCATCGATAGAATACCAATGCGAACGTTGCGACAAATTGTACAAAGGTGTGAAAGCTCTTCGTTTTCACTTGAAACACGACTGTGCGAAAGCTCCAGGCTTCAAATGTGCCCAATGCGATTACAAAAGTACTCGTAAAGCAAGCTTACAAACACATATCAAATGCAGACATACCAATGTGACGAAGAGGCACGCTTGTGCCACTTGTGGGCGTCAATTTAAGCATCGTTTTCATATGTTGAGTCATCAGCGTCATTGCGGCCCGGAGAACAATCTCAAGTGCCAATGGTGCGAGTACACGACCGACAACAAATGGGGATACAAGCAACACATTAGAAATATCCATACGGATCCAGAAAAGCTTGACTTGTATATGTGTATTACTTGCGGCAAAAAATACAAGCATTTAAATAGTctgaaaaaacacaaaaacgTATGCTCGTTCAAAGattacACAATTGAAGTAAAACCTATGTTGAAAATTCGAGAAATTCGATCTCTGAAGGATTATGATACAACAGATGACTACAGAgatgataattttgttaagaTTGAAACAAATTACTTAGATTACAATGAGTCcgatgatgacgacgatgagGATGAAAACGAGGACGATTTAGACGATGAAACATATGATCATAGGAAAGATGACCAGCCTGAAATGTTTGCttcttttgatttaaatttttcaaGTGATTTATCCGAACAGAAACTAGAAGTAGAAgcgtataaaaattcaaaactgaCAAGACAAATGAttgGTGACCAACCAAACAATGGAAGCACATTGAAGGATCGTGTAAAAACTGAACCTATCATCGAATCCACAGAAAGCATAGACACGGCAGAACTGGATCTACATTACATCAAGCAGGAAATCATATATATTGATGAAGAATCTCaaaatgatgatgatgattttgATTTTACTACCGATGATGATCATactatcaataattttattgaagagCACTCGGTAGTTACAGATGGGGAACCCAGTGAAGATAAACTTGCGGAAAAACTCAGTGAACCTGGCAAATCAGCTCGTACTCAAATAATGGTTTACTGTCGAACCTGTAACGTGACCTCGGAGAAACCACCAAGCTACAAAAACCGAACTCTCTATTGCAACACTTGCAATACTGTCTTAACCTGGTGCTGCGTAGTGTGCAATCGTCAATACGCTTTGTTTGAAAGTGCTCGAAGCCACGTACGTTTCTCCTGTACTGGAATCAATCCACTTTATTGCTCGCATTGCAATTTTTCGACACACAACAAATATATTCTTCTTAcccatttgaaaaatgtacatgCCGAGGAAGATTTGCCAGGCTGGCATCGCTGTATTCGTTGCAAACGTCAATACAAACACAGGAAACATTTACAACGACACGAAATTAGTTGTGGTATGGTACCACATATCAAGTGTCGTTGGTGTGGATATAAATGCAAACGAAACGATCATCTTACTCAACATATGAAACATAAACATCCTGATAAAAACGCCGATGAGAGTAGAGTTATGACTTATGGCTGTCCTGGTTgtcacaaaaaatacaaatacaaaatgtcACTTACGACACATATGAATCAGTGTTCTGAATACAAGGAACAATTAAATGACGGTGATGAATCCAACGATAATTCGTCAAGATACTCGGAACCTGGTACATCGCCAATAGAACCTTTAGATACAATTGTAACCCCCACGAAGCGACTCGCGTTGAGCGAAGAATCTTTGGTAAAAGCTATAGAAGCAATCAATGAACGTGGTTATTCGTTTTACAAAGCATCCGTAGAGTTTGGAATTCCGAGAAGTACGTTGTTTCGCCAATGGAAAACCaaaaaattaaccaaaaacaaaattggaCGAAAACCAGTCCTAACACCCGAACAAGAGGTTTTTTTCATACGGCGAATCAGACGCATCGTTGACACAAATTATCCCGTAACTCCTGATTATTTCTGCCACTGCGTGTACAAATTTTGCGAGGAAAATcatattaaatgtaatttctggaaagataaaaaaatagctgaACGCTATTGGCTCGAATACTTTGGTGGAAGGTACCCAgaaatcgtaaaaatgattaaaaaaaacccaTCCAAGTCAACCAATGTTAGTTTATTACAAGCTCAAGAATTTTGTCAGAATTTACAGGAAACGATGATAAAGAACGATGTTACGAATAAACCATACTTAATCTACAACGTTGAGTGTAAAACTCTGAATATCAATTTAGCCACTGGACTCGCGAATCTAAGAGACAATGGTACCATCGAGGCAAATCAATCTGACGATGAAcaagttaaaattatttgtgctGGCAATGCAACTGGTCAGGTTATTCCACCGATGATAATATTTAAAGGAGAAAAAGTGGAAAGCAAGTGGTGCAAAGATTTTCCTCTAGGAGCTATTTCCAGAGCGACTGGTAACGGAAACGTGACTTCAGATGTTTTTAATAGTTGGCTCcgacattttcaaatacacaAAAGTTCGGCTGCTTGTTTGCTCATATTTAACGAAACAACTTTACGCCTAGATTATAACGTTATTCAACTAGCTGATCTATTGGGTATCACCCTCCTGTGTTTACCAGGTAACAATTGTATTCACAAAATTGGACCTATTTACAAAGGTTGTTTTAGAGCATTTGACGACCAATTGGTTAATGAGGTTGACAAATTCtggaaaatgttaaatgtGGAACGAGATACtttcaaagtttttacaaGGCAGACTTTTGGCAAAGTGTTATCTAGCATTTGGAATAAAGCTATGACCATCAAGAATGTTAAATCAGGATTTGCTGCATCGGGAATTTATCCTTTTGAACCGGcggttattttaaaacaatttgaagATATTCCTAGTAGTTCTTCATTCTTAGACTTTTAA
- Protein Sequence
- MISLLRRNYKPNNRKQRPLTRSRTDQQQQQRQQQQQQQQQQQQQQPAQEQNLPQGQPTPMEQDPAQEQQPQQQKQQQKQQNKLQGRGQTRPQNKPQSKPQNKPKSKQLTEQQETEQLLHEQLQQHLQQQLQQQQQQQQQQLHLPNRLELEIQPIDDDASSSRDSIAFPASLGLIPRIQAEQQQLQLQQQQQQLQQQQLQQQQLQQQQQQQQKQQQQQQKQQQQQQKQQQQQQKQQQQQQKQQQQQQQKQQQQQQKQQQQKQQQQQQKQQQPQQPQQQQQQPQQPQPQQPQPQQQQPQQQQEQQQQQQPQQQLQQRAKQENAEEGEEQQQPEQAQADAAQEPSLEREFRCRFCGKGYRWKSTMRRHESLECGDKPPSFQCPDCPYKARQRAEGIPLTNLTSSTSWASWGGPTIIWRTASSINHELNNQESNNQTELNNQQESRDFICYDCNRSYKLKSSLRNHKRWECGKEPQFQCPYCQYKAKQKIHVEKGMKRSRRFIKTNGPKRDYKKDIAEIIIDDDTKTVREVHYVREEMINSSDSSNDDNNVIEDSHDRLDLTDQSFELSYCRNCNQSERLVHWEKDQRCNTCNSSIEYQCERCDKLYKGVKALRFHLKHDCAKAPGFKCAQCDYKSTRKASLQTHIKCRHTNVTKRHACATCGRQFKHRFHMLSHQRHCGPENNLKCQWCEYTTDNKWGYKQHIRNIHTDPEKLDLYMCITCGKKYKHLNSLKKHKNVCSFKDYTIEVKPMLKIREIRSLKDYDTTDDYRDDNFVKIETNYLDYNESDDDDDEDENEDDLDDETYDHRKDDQPEMFASFDLNFSSDLSEQKLEVEAYKNSKLTRQMIGDQPNNGSTLKDRVKTEPIIESTESIDTAELDLHYIKQEIIYIDEESQNDDDDFDFTTDDDHTINNFIEEHSVVTDGEPSEDKLAEKLSEPGKSARTQIMVYCRTCNVTSEKPPSYKNRTLYCNTCNTVLTWCCVVCNRQYALFESARSHVRFSCTGINPLYCSHCNFSTHNKYILLTHLKNVHAEEDLPGWHRCIRCKRQYKHRKHLQRHEISCGMVPHIKCRWCGYKCKRNDHLTQHMKHKHPDKNADESRVMTYGCPGCHKKYKYKMSLTTHMNQCSEYKEQLNDGDESNDNSSRYSEPGTSPIEPLDTIVTPTKRLALSEESLVKAIEAINERGYSFYKASVEFGIPRSTLFRQWKTKKLTKNKIGRKPVLTPEQEVFFIRRIRRIVDTNYPVTPDYFCHCVYKFCEENHIKCNFWKDKKIAERYWLEYFGGRYPEIVKMIKKNPSKSTNVSLLQAQEFCQNLQETMIKNDVTNKPYLIYNVECKTLNINLATGLANLRDNGTIEANQSDDEQVKIICAGNATGQVIPPMIIFKGEKVESKWCKDFPLGAISRATGNGNVTSDVFNSWLRHFQIHKSSAACLLIFNETTLRLDYNVIQLADLLGITLLCLPGNNCIHKIGPIYKGCFRAFDDQLVNEVDKFWKMLNVERDTFKVFTRQTFGKVLSSIWNKAMTIKNVKSGFAASGIYPFEPAVILKQFEDIPSSSSFLDF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00326299;
- 90% Identity
- iTF_00326299;
- 80% Identity
- iTF_00326299;