Ccun004325.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Chouioia cunea
Gene Symbol
-
Assembly
GCA_030064505.1
Location
JAOPFQ010000002.1:10042479-10046369[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 0.47 37 4.9 0.8 1 21 590 610 590 612 0.78
2 16 0.084 6.7 7.3 1.7 1 19 618 636 618 639 0.90
3 16 0.43 34 5.0 1.0 2 23 645 666 644 666 0.95
4 16 0.0016 0.13 12.7 1.0 3 23 675 696 674 696 0.95
5 16 0.0021 0.16 12.4 2.1 1 23 703 726 703 726 0.96
6 16 0.00044 0.035 14.5 4.3 1 23 732 755 732 755 0.93
7 16 4.6e-06 0.00036 20.7 3.5 2 23 789 810 788 810 0.97
8 16 7.8e-06 0.00062 20.0 0.2 1 23 816 838 816 838 0.99
9 16 0.003 0.24 11.9 2.8 2 23 850 872 849 872 0.95
10 16 0.0047 0.37 11.2 1.7 1 23 878 901 878 901 0.95
11 16 0.0016 0.13 12.7 1.7 2 23 923 945 922 945 0.95
12 16 0.00062 0.049 14.0 0.9 2 23 952 974 951 974 0.97
13 16 2.7e-05 0.0022 18.3 1.2 2 23 982 1003 981 1003 0.96
14 16 0.0015 0.12 12.8 2.1 1 23 1009 1032 1009 1032 0.95
15 16 0.63 50 4.5 4.6 2 23 1039 1060 1038 1060 0.96
16 16 0.0016 0.13 12.7 2.8 1 23 1066 1088 1066 1088 0.99

Sequence Information

Coding Sequence
ATGGAGGATAATCAAAATTCCAGTAATGTATATTCTAAAACACCTCAGGGTGGAAAGGAAAAGTATATTgggttaaaaataacaaacctTAATGACCTCAAAAAAGCCACTCCTCGCCTGAAGATTCCGTTACTATCGTCTCCTTCATCTGTCAATAGAATTTCGCCAACCTCAAAAGATAATAAACAGAAGTTACACGAGTACTGTCGTACTTGTGCTGGCTTAAAAGTTCCACTAGTCGatatttttagtgaaaaaGGAATTCAGATGAGATTGCAACAGCAAATACAACAcctagaaaatattaataaggaTGATAGTTTATCAACCCAAATGTGTATGGACTGTATTTGCGATTTAAAAATGAGTTATAAGTTTTTCATACAGATTAAAAAAGCtgaaatgaaattgaagaCGATTGCTCAGCCACTTATCGATTTAGTATCGAAATCTCAATTGCCTATTGAAACACTGCCATCGCCTGATCAAATCAAAGAAGAATTTTCTCCTGAAAATTCAACACTAAACACTACTAACGACTTTGATAAGAGTATTAAAAATGAGCCAGAAGAATATGATTGTAGTTACCTGAATGAATCCACTAATGATGGTAATGAATCATTTGAAGAGTTTGATCCTGATGATGCAGGTGATCATAATGAAAACGtcgaaaaaattgcaaattttgaATCTTCTACAGCagagattgaaaataaaatagcttaTAGATATGACAAGTGTCTCAATGCCTATGTCAGAGTAAACAATGACAatgaaagtaattttgttgagaaacaaaatatagatattgataaaattgaagaaaatgttaataatacaGTATCCTTGAAGGAAGGGAGTCCAACTAAGTCACCTATCAAAACTAAAGgtgtgaaaagaaaattggagAGCTTAAGTAATGAAAGTATTGACAATTTCAGCAAAAAAAGTACTCCAAAAGTCAACATTGatattaaagaattaaaaCTTCCAAAATTGGATCTTCATGACagtacaaatgtaaaaaagacgGAAGATGGTGTGATATATGTTACTGCGAAAGGATCTAAACCTAATGAAATGCTTTTGATCAAAGTCAAGCAAGTAAATAAGGCTGctaaaaaaggagaaaaaatggGAGTTAAGAAAAAATCAGATGCATGCACTGAGTTGCTGAGAAAAATTGATATGGACAAGAATAAAGGGAAGGATATCGATAAACAAATAgaagagtataaaaaaaagagagaacaaattTTGGGAGATAGCGCTAATACAAAAGATACGACTTCTGAAGAAATGGTGTTAGATGGAAAGACAGCTAGTGTAGGCTGTTGTAcggaaaacaaaacaaattccCAAGAGGACTCAAGGAGAACGGAAAAAGTTGTAACAATCATAAAATCGGATAACGAGGAAACTATACTAGTTAACGAAGTATCCACCGATGATTCTGATCATACCGTGGTTACGGAAAGATTGAAACAAAGATggaaagaaattaaacaaagacATGAAAGTATAAGTAAAGATCTTGCTGAAGATCACACAGATAGGTTGAAGGCGGTTCTGAAGCAGAAAGAGGAACATATAGAAgattttaagaattatttgaaactgcgaaaaattgttgtatctCGTCTGAAAGATGAAGATATAATATCCTTGTACGagcataaaaataatgttattctGGAAAGGGCACCCGTGGAAGAACCCCAAGTTGAACCCATAGAGACGATAGATCCATTTGAATTGGTGGAGAGTTACGATTGCGACTTTTGCCATGAAACTTTTGCCACCTTAGAGGATGAATTTGAACATGCGAAGGAGCATGATTTCAAACTGATGCATTACTGCGAAGATTGTGGTCAAGAATTTGTCACTCACAAGACAAAACGCTCCCACAACATAACGTGTGTACAGAAACTGATGTGCAAATACTGTGACATGATTTTGGaatcgaaaggaaaaaagaggcAGCACGAACAGAAACACTGCGATGAGCAATACGGTCAGCTTTGCGATTTATGTGGGGAAAGGTTCAAACATCAGGGTACATTGGATCAACACGTTAAAGCTAAGCACATGAACCTTGAAAAAGTCTTCAAATGTCCTCAATGCCCAAAAAAGTTTGCGTTTCGGACAAAATTgacttttcatttgaaatctGTTCACACGAACAATCGGCCTTTTTTATGTGAAGACTGTGGctgcaaatttaaaaatccgGCAAGTTTGAGACATCATAAAATTCGAAAGCACGCGCCTGtagacaataaaaaagagtGTCACATCTGCAGCAAGTTGGTCCCAGTTTACGGGATGTCGAAGCACATGCACACGCACAAGGCTTACACAATCAAGTGCGATCATtgcgaaaaaatgtttaaaaatacgtcGACGTTGAAGCAGCATCTGAGAATTCACGAGGATCAACGCCAGTACAAATGCGACATGTGTGGTGTTGGATTCAACAGACGAGACGGCTTGAGATTGCACTTGAAAGTTCACGAGAAACCGGACAGCAAAGGATTGAAAGAGTGCGTGTGTCAAGTTTGCAACCAAAAATTTCCAAGTCACTCGATGCTTGTAATTCATCGCAATCGAGAGCACAAGGACGGCAGAAACTACACCTGTCACATATGCAACAGATCGATGATATCCACTCGATCGTTGGAGTGGCACATGGCTCATATACATAACGAGGTGGTGCCAGGCCTACCCAAAGATGCGTCAACCGTTGACGTTGAGACGAAGCGAGTCTCTTGCGTGCACTGTGGCAAATCCTTCAAGACCGAGATGATCTTGCGAACCCACATAAAAAACACTCATACGGAAAGAGAACCCATGAAATGCTTGGACTGCGACGAGATGTTCACCTCCGAAGTGCGATGGAAACATCACATGATGACTGCGCACAGTCGCTTCGAGGGCACTCTCGAGTGTCCCCACTGCCCCAAAAGATTCGTCAATCAGTTGAGACTGAAAACCCATATGATTTCCCATTCGGACGAAAGACCGCACTCTTGCGATATATGCGGGTTTATGCTGAAAACCAAAGTCCAGCTGATCAAGCACAAACAGAACAGACACAGCAACGAGAGGCCCTTACAATGCAAATTCTGTAACTGGAGGTGCAAGCAAGTGAGTGCATTGGTCTGCCACGAGAGGACCCACACGAACGAACGGCCTTATCAATGCAGTGTATGCAAGCAAAGATTCAAGTATTTAGGCGATAAGAACAAACACGAGAGAAGACACGAAGCTCTCGGTGGCTCTGGATTCAAAAGGATCGTCACAGGTAGAAATACCTCGACGAAAGTCATCAAAAGACGAAGCGAGCTGTTGGCTGGCGATCAAGATCACATAAACGAAACACCCGATGAATCGCTCGAGCTTGAAGAGATTCAAAATACTTCCGACTATACGGAGAATAATGACGATACTTTGGGTACGTCCCAATTCATCAAGTTTGAGGATTCCAGTATAGTAACCGAGGAATCGCAAGCATCTTACGAACCAatttacgTTGCTACGCAAGAATCGGATGGCGTTCCCAAAGTAGTCATAGGCATGGAAGACACGGCTGTCTACACCGAAGAGGTAACCGCTGACAATGTTGAGCATGAAATAGTAACGAGTGACATGTTATCGGGTGAAATAGACGAAAGTATGTTACAACAAAGCACTGTATTCCTCCGGAGGAGAGACGACGATGGTCAGATTCAAATGATACCAGTCTTTCTCACTCTGAACACGGAGGATCAAAACTCTGAAGTCAGTCTAGCGACTGCCTCTATCATGTGA
Protein Sequence
MEDNQNSSNVYSKTPQGGKEKYIGLKITNLNDLKKATPRLKIPLLSSPSSVNRISPTSKDNKQKLHEYCRTCAGLKVPLVDIFSEKGIQMRLQQQIQHLENINKDDSLSTQMCMDCICDLKMSYKFFIQIKKAEMKLKTIAQPLIDLVSKSQLPIETLPSPDQIKEEFSPENSTLNTTNDFDKSIKNEPEEYDCSYLNESTNDGNESFEEFDPDDAGDHNENVEKIANFESSTAEIENKIAYRYDKCLNAYVRVNNDNESNFVEKQNIDIDKIEENVNNTVSLKEGSPTKSPIKTKGVKRKLESLSNESIDNFSKKSTPKVNIDIKELKLPKLDLHDSTNVKKTEDGVIYVTAKGSKPNEMLLIKVKQVNKAAKKGEKMGVKKKSDACTELLRKIDMDKNKGKDIDKQIEEYKKKREQILGDSANTKDTTSEEMVLDGKTASVGCCTENKTNSQEDSRRTEKVVTIIKSDNEETILVNEVSTDDSDHTVVTERLKQRWKEIKQRHESISKDLAEDHTDRLKAVLKQKEEHIEDFKNYLKLRKIVVSRLKDEDIISLYEHKNNVILERAPVEEPQVEPIETIDPFELVESYDCDFCHETFATLEDEFEHAKEHDFKLMHYCEDCGQEFVTHKTKRSHNITCVQKLMCKYCDMILESKGKKRQHEQKHCDEQYGQLCDLCGERFKHQGTLDQHVKAKHMNLEKVFKCPQCPKKFAFRTKLTFHLKSVHTNNRPFLCEDCGCKFKNPASLRHHKIRKHAPVDNKKECHICSKLVPVYGMSKHMHTHKAYTIKCDHCEKMFKNTSTLKQHLRIHEDQRQYKCDMCGVGFNRRDGLRLHLKVHEKPDSKGLKECVCQVCNQKFPSHSMLVIHRNREHKDGRNYTCHICNRSMISTRSLEWHMAHIHNEVVPGLPKDASTVDVETKRVSCVHCGKSFKTEMILRTHIKNTHTEREPMKCLDCDEMFTSEVRWKHHMMTAHSRFEGTLECPHCPKRFVNQLRLKTHMISHSDERPHSCDICGFMLKTKVQLIKHKQNRHSNERPLQCKFCNWRCKQVSALVCHERTHTNERPYQCSVCKQRFKYLGDKNKHERRHEALGGSGFKRIVTGRNTSTKVIKRRSELLAGDQDHINETPDESLELEEIQNTSDYTENNDDTLGTSQFIKFEDSSIVTEESQASYEPIYVATQESDGVPKVVIGMEDTAVYTEEVTADNVEHEIVTSDMLSGEIDESMLQQSTVFLRRRDDDGQIQMIPVFLTLNTEDQNSEVSLATASIM

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-