Ccun002977.1
Basic Information
- Insect
- Chouioia cunea
- Gene Symbol
- zfh1
- Assembly
- GCA_030064505.1
- Location
- JAOPFQ010000001.1:33674210-33676493[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 1.3 1e+02 3.5 1.5 3 13 56 66 54 72 0.88 2 15 0.00034 0.027 14.8 0.6 2 23 88 110 87 110 0.96 3 15 0.00016 0.013 15.8 0.6 1 23 127 149 127 149 0.96 4 15 1e-05 0.0008 19.6 2.8 1 23 168 190 168 190 0.98 5 15 0.00026 0.02 15.2 0.1 1 23 196 218 196 218 0.97 6 15 0.001 0.08 13.3 0.9 1 23 224 247 224 247 0.95 7 15 6.8e-05 0.0054 17.0 2.6 3 23 321 342 319 342 0.98 8 15 0.029 2.3 8.7 4.0 1 15 348 362 348 370 0.83 9 15 0.0039 0.31 11.5 6.1 1 23 379 402 379 402 0.97 10 15 0.00045 0.036 14.4 3.1 1 23 408 430 408 430 0.96 11 15 4.9e-05 0.0039 17.5 1.1 1 23 435 458 435 458 0.96 12 15 0.011 0.84 10.1 2.9 1 23 464 486 464 486 0.98 13 15 3.9e-06 0.00031 20.9 2.3 1 23 490 513 490 513 0.97 14 15 0.023 1.8 9.1 0.5 2 23 520 541 520 541 0.95 15 15 5.9e-06 0.00047 20.4 1.5 1 23 547 570 547 570 0.97
Sequence Information
- Coding Sequence
- ATGGATTGTGTTGCAGCTGCAGGCGAAGACAATGAAAAGGTTACTCGTGAAAGCTCGCCGGGACATGAAAAGAAAAGTAAGCCAAGTAAATCAGATCCTAATCCCAGAGTTCAATTCAGATACAATCTACGAAAACTGATCGATCAAAAATCCGAATACAAAGTTTGCAAGTGCTGCGGTAAGCGTTTCAAAAATTGGCGAATAATGTACGAACACGAGCTGTTTATGCAAAAGAAGAAgtcaaaaacaaagaagattCTAGTTTGTGATACGTGCGAAAGTGGTTTTTCATCCAAGTTTCAGCTCGTGACgcatatgaaaaaattgcatcCGGATCAATTTAAGGTTAGTGCAAACGGCGTCGTATCTAAAATTTGCTTCGATTGTCACGTTTGTCAAAGAGTGTTTACGAATATCGACGTTCTTCGAAATCACCTACTTGGTCACATCAAGAACGCGAGTGTTAATAAGGCAGCTAATTTTGAGACCGAACTCACTGGTTTCACGTGCAAAGagtgtggaaaaaaaatttcgagcaAGGACCACATGAAGAAGCATCTCCTTGTTCACACGGGCGAACGCCCGTATAGTTGTCCCGATTGTGGACAAGCATTTGCTTTGCGTAATACTATGCGAGTGCATGCGCTTTCTCATTACGGCATTAAACCGTACACGTGCCAGCTCTGTCGGTTAAAGTACTCGCAGAGATCAGCGCTAATGATGCACTGGAAAGCTAAACACAAGAATCTACCATCCCCACCGCCTATCGAAATACATCAATACTTTGACGAGGAAGGCAAAGTTTTGACTCGTACGCATATACCGGAAGAGCAAAAGACTCGAGCCGCGAAACGAAATATCAAGAGGAAAGCCATTGAGAAAGTTAAAGAAAAGGATAAGGTTGCATCTGACGACGCAACGGAGttgctttataaaaaattgaagaacgGTGAGTTTGGTTGTAAAATTTGCGGTCAAAAGTTTTCTCACCGTTACAAAGTAAACGTACATATCAAGACAAGACACGTAGCTTCAAAGCAGTTTAAGTGCGAAGTATGCAACAAGACGTATAAAACCAAATACCAGTGCGATATGCACTCGATACAACATCTCGAGAACAGTTCGGACTTTCTCTATTGTTGTGACAAATGCGATTACCGTGCCAAGAGTAAGCACTACTTGAAAATTCACATGATTCGCAAGCATACCGAAGATTGCAAGTTTGAATGCGATCACTGTGGCAAACGTTTCAAGATGAAAATGGATCTCAAGTTTCATTTGGGTACACACGATAGGTTGCAACACATGTGCGACGCGTGTGGCCGAATGTACAGCAGTCAAGAGTCACTGTACAAGCATCGTAGAGTTGTACACGTAAACGAGTACAAGTATCAGTGCGAAGTATGCCATCAAAAACTGTTGACCCGAGATAATTTCGAAAGCCACATGACGAAGCATCAGCAGAAGTACAGTTGCGACGAGTGTGATCTCAAATTCGTTAGAAAGTATTACCTTACGAGGCATAAGAAACGCGTGCATAAAGTTGAGAAGACCAACGTGTGTTCGGTTTGCGGAAAAGCATTCGTATGCATGGCTACGATGAGAGTTCATTATTTAACTCATGCCAAAATTAAGCCTTACATGTGTAACGTTTGTGGTTATAGCTTCACTCAACGATCGTCTATGATGTTGCACTGGAAGAAGAAGCATCCCAACGAGACGGTACCACCGCCTCCGGTCATACTTAGTCATTTCTTCGATTCTCTCAAGAGCAAAGTACATTAG
- Protein Sequence
- MDCVAAAGEDNEKVTRESSPGHEKKSKPSKSDPNPRVQFRYNLRKLIDQKSEYKVCKCCGKRFKNWRIMYEHELFMQKKKSKTKKILVCDTCESGFSSKFQLVTHMKKLHPDQFKVSANGVVSKICFDCHVCQRVFTNIDVLRNHLLGHIKNASVNKAANFETELTGFTCKECGKKISSKDHMKKHLLVHTGERPYSCPDCGQAFALRNTMRVHALSHYGIKPYTCQLCRLKYSQRSALMMHWKAKHKNLPSPPPIEIHQYFDEEGKVLTRTHIPEEQKTRAAKRNIKRKAIEKVKEKDKVASDDATELLYKKLKNGEFGCKICGQKFSHRYKVNVHIKTRHVASKQFKCEVCNKTYKTKYQCDMHSIQHLENSSDFLYCCDKCDYRAKSKHYLKIHMIRKHTEDCKFECDHCGKRFKMKMDLKFHLGTHDRLQHMCDACGRMYSSQESLYKHRRVVHVNEYKYQCEVCHQKLLTRDNFESHMTKHQQKYSCDECDLKFVRKYYLTRHKKRVHKVEKTNVCSVCGKAFVCMATMRVHYLTHAKIKPYMCNVCGYSFTQRSSMMLHWKKKHPNETVPPPPVILSHFFDSLKSKVH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -