Ccun006180.1
Basic Information
- Insect
- Chouioia cunea
- Gene Symbol
- -
- Assembly
- GCA_030064505.1
- Location
- JAOPFQ010000002.1:32703376-32707614[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.017 1.3 9.5 2.3 1 23 345 367 345 367 0.97 2 17 0.029 2.4 8.7 1.5 2 23 405 426 405 426 0.96 3 17 0.0044 0.35 11.3 0.9 2 23 489 510 488 510 0.97 4 17 6.2e-05 0.005 17.1 3.5 1 23 565 587 565 587 0.96 5 17 0.00014 0.011 16.0 1.1 1 21 597 617 597 621 0.92 6 17 0.00027 0.021 15.1 0.3 1 23 702 724 702 724 0.97 7 17 6.8e-05 0.0054 17.0 3.5 1 23 768 790 768 790 0.97 8 17 0.00024 0.019 15.3 0.7 1 20 795 814 795 816 0.94 9 17 0.055 4.4 7.9 0.6 2 23 827 848 827 848 0.97 10 17 1.5e-05 0.0012 19.0 0.7 2 23 886 907 885 907 0.97 11 17 3.9e-05 0.0031 17.8 1.8 1 23 912 934 912 934 0.95 12 17 3.8e-06 0.0003 21.0 1.1 1 23 940 962 940 962 0.99 13 17 3.9e-06 0.00031 20.9 0.4 1 23 978 1000 978 1000 0.95 14 17 3.2e-07 2.6e-05 24.3 0.6 1 23 1006 1028 1006 1028 0.99 15 17 3.5e-05 0.0028 17.9 0.2 1 23 1034 1056 1034 1056 0.97 16 17 6.9e-05 0.0055 17.0 4.1 1 23 1062 1084 1062 1084 0.96 17 17 0.0091 0.73 10.3 0.4 1 20 1090 1109 1090 1111 0.89
Sequence Information
- Coding Sequence
- atggATGCCGTCGAGGTGGTGAATTCATCGGAGGAGGAATCGAAACCGGAGGACGAGGTAATGCCGGAACAGCTTGATGTTTGCCGAGTATGCCTCCTCGGTAATTCTTCGATGAGAGGCCTCTTCCACGACGAAAGCAACATCATGCTCTCGCAAAAAGTTATGACCCTCGCTAACGTTAAGATAATGCCTGGAGATGGATTACCCTCACATATTTGCTGTGACTGTTGCGACAAACTTGAATTAGCTTACAAATTCAAGTTGCAAGTTGAGCAAGCCGACACTATGTTGAGAGAGAAGGTGGACTCGTTGCACATGAAGgatgaattcttttttaatcaagtaAATGTTAACCTATCTCATCATAGAAACGATATAAGTGAAAATAGTCACGAAAGCTTGATTTTAAAGGAGCATATAGCTTTGTTGAGTGAGAAAATACATGAGACTGAACATGGAGTCAAGAAAGAAGTAGTAATGATAGGTGGTCAAAATGTAGAAACTTACGATGATAGGGAAAAAAACCAAGAGTTTCCTTGCAATCaagatgaaatttcaattcagACCCAACCAGAAGTGGATATTGAGCAAGAGGTGCAAATGCAAGAAGTACAGAACGAtcataataatcaatttgtaaCAGAAGAACTTCAAGATTTGATGCTCGGTGAAATAAGAGATAGAGCAGGGTTGCAAGACGATTTAAATCAAGTTCATCAAATAAACCTTGATGAACACAATTATGTAGCAGAGTCACAGCAGTGTCAGAACATTGATGAAAATGATGTTTTAATACAACAGcaagtaaaaaaaaccaacaaagaagaaataaaagacgaTGACACATTGAATGGAGAACCAGAAGTAAGCAATGTACCAGTTGGAACACAAGCAATTGAAATAACGCGTCGTAGTCAGCGCAAAATAAACCAGAGAAAATCTCGAGAAAACAACGACGTCAACTATTATGATAACACTAATCTTAGTTCAAGATTGAAGCAGAGTCAGTCTGAGAAGTCAGAGAAAGTTTACTTCATGTGTTTTATCTGCGATAGACAATTTTTATCTAAGGACGTTTTAAAAGAGCACATGCACTCGCACGAAGAActgaagaaaaatttttcaagtattacaCGAACATCAGAAAAGGTATCGAACGTTCCAACAAGTCCATCTTCCTCAAAGACATCGTCAAGTGGAAAAAAGGCAAATACTTGTCCTCATTGTGGCAAAGAGTATCTTTATGTCATATCATATAAAAAGCATTTGCGACAGcatgaaaaagataaaagtagAGTCAAAGATGAAACGATGCCATTGGAAGTATCCTTAAGAGAAGATGATGATACTCTTGATTATCAAGGGTATGACGACAATCAAGTAGGTTATGCTAGTTATGAAAAATCGAACAAGGAAAACGAAGattcagaaataaaaagtgatgtaaacatatacaatttattaaaatgtagtGTATGCGCAGAAACTTTTGACAcatttgaaaagttgaaaGATCATCGATTGAAACACGTCGCTGAAGGTGTGCTCAGTGAACAGGATctcgaaaatatttcgaaaactaCTATACAAGACTTTACGACAGACAATACGAAAGAACAAATCGTGGCTTGCAAAGAAGAGGTCAAGGAATCAAAATCCTCGATTAGAAAGACCACACAGAGTGTCGCAAAGTACGATTGTAAATTCTGCCATGAATCTTTCAACAGAAAAGACCTTCTGCGAAAACACGAGGAGATGCACGTAACCAATCTGAAGGGTCTGAAAAGTTTCAAATGTACACAGTGTAATAAGTCATTTAACAACGAGTTGACTCTTCGTAATCATCTTATAGCGACGAATCACAAGACAATAATGCAGGGTCAAGAGTATGATCCTAACAAGAGAATTAAAAGATCAGCTGCCAAAGCAGCTCAGAAAATCATTGATCAGATCAAGAATTTAGATGAGTCTGATGATGAGCCAAATAAAGAAGAGGAGAAAGATCGAGATTTTGAAGAGAGTGTAGATATGTCAGCCGTCGTAGAAGATGTTCATCTGAGTTTGCCACATACAACTAAGAAAACACAGCGAAGTCCAAAGATTTATAGTTGTGCGACGTGTAACTTGAAGTTTCCTTCGAAGCAGGCCCTTGCTAAGCATATGGATTTGCACACTAAAGATGAAAGTTCGAGTAAACCCGAACCAATGAAGAAGGAAGAAATACCAGTGAGAAAAGAATttgacgacgaagaagaagatgacGATGATTTTGAGGGTGGTCTTGACTGGCCAATGGAAAGTCATGAGTGTCCCACTTGCAAAAAGCAATACAGCACGAAAAAGTCACTACTCCGTCATCAGTTGTTGCACGAGGACCCGAACTTCGAGTGCGATATCTGCAACGTCAAGTTTTATAGGAAAGACAAACTAAAAGCACACTACGACAAGTGCTCGGAAAAAAATCCCGATCAAGTACGGAAATGTAATATCTGCGGAGATACATTTGAAAACAACGAGATTCTGAGAGAACATCGAACGAAGCACGTGATGGAAGGTATTCTAACGGAAGAAGATTTACAGGAAATCGAGCCCAAACCAGATGATAATGAATGTGAAAAAGCTCCAAGAAAGAGACGAACTGATATCGTAGGACTAGAGTGCCAAGAATGCAATAAACGTTATACTTCTAGGAAAGGTCTGCTGAGGCACATACAGgtACACGAAGGCAAGAAATATCTGTGCGACATTTGTCCAAAGAAATTTTATCGTCGTGAACACCTAAAGCTGCACGTAGCGAAGCATAATATGATTAAACCATACAAGTGTCCCAAGTGTCCGAAACGTTTTATCAAAGAGGAACAAATGAACAATCACATGCTAAAGCACGAGCGAATCGCGAAGAAACCTAAAGAGACCGATACGCCAAAGCGTTTTCTTTGCGAAATATGCTCAAAGAGTTTCACTCAATCGACCACCCTCATAGCTCATCTTCGAGCTCACAACGGTATCAAACCCTACGTATGCGAAGTTTGCTCTAGACCGTTTACCACCAATGcttatttgaaaatgcatATGCGTACTCATACTCAGGAGCGACCCTACATTTGCCAGTATTGTTCTAGAGCTTTCGCAAGAGCCGATACCTTGGCAAATCATTTGACTTCTCATACTGGAGAGGCCAAGTACAGCTGTAAATACTGTCCAAAGCATTTTAGAAGGTTGAAGTCATTGAAAGAGCACGTGTTCATACACACCGGACAAAGGCCGTACGCTTGTCCTACTTGTGACAGGAGGTTCAACAATAACGGTAGTAGATATGCCCACAGCAAGAGATGTAAGCAAAATCTTGTGCAGGGTAGGCAGAACAATCAGATTTCGGTGCAGGATCTACGCGTACAAGAGCAAGATGAACAACAGCTTCAATTGGAAGAAACGCAAGAATTGAGGTTGCAACAGGCAACCATAAGTCAAGCTCAAATTATTAAACCACAGAACATCAAGACTATTACCTTTGCTAGGCCTGGTGGGACTATCGAGCAACCGCATGTACTAACTAATCAGGATGTTTATATGCCGCTTATTTTTGTAGGTGGCGAAGAACTGATTGCTCTGTCCGAAGGCACCAAGATTTTCACGACTTAG
- Protein Sequence
- MDAVEVVNSSEEESKPEDEVMPEQLDVCRVCLLGNSSMRGLFHDESNIMLSQKVMTLANVKIMPGDGLPSHICCDCCDKLELAYKFKLQVEQADTMLREKVDSLHMKDEFFFNQVNVNLSHHRNDISENSHESLILKEHIALLSEKIHETEHGVKKEVVMIGGQNVETYDDREKNQEFPCNQDEISIQTQPEVDIEQEVQMQEVQNDHNNQFVTEELQDLMLGEIRDRAGLQDDLNQVHQINLDEHNYVAESQQCQNIDENDVLIQQQVKKTNKEEIKDDDTLNGEPEVSNVPVGTQAIEITRRSQRKINQRKSRENNDVNYYDNTNLSSRLKQSQSEKSEKVYFMCFICDRQFLSKDVLKEHMHSHEELKKNFSSITRTSEKVSNVPTSPSSSKTSSSGKKANTCPHCGKEYLYVISYKKHLRQHEKDKSRVKDETMPLEVSLREDDDTLDYQGYDDNQVGYASYEKSNKENEDSEIKSDVNIYNLLKCSVCAETFDTFEKLKDHRLKHVAEGVLSEQDLENISKTTIQDFTTDNTKEQIVACKEEVKESKSSIRKTTQSVAKYDCKFCHESFNRKDLLRKHEEMHVTNLKGLKSFKCTQCNKSFNNELTLRNHLIATNHKTIMQGQEYDPNKRIKRSAAKAAQKIIDQIKNLDESDDEPNKEEEKDRDFEESVDMSAVVEDVHLSLPHTTKKTQRSPKIYSCATCNLKFPSKQALAKHMDLHTKDESSSKPEPMKKEEIPVRKEFDDEEEDDDDFEGGLDWPMESHECPTCKKQYSTKKSLLRHQLLHEDPNFECDICNVKFYRKDKLKAHYDKCSEKNPDQVRKCNICGDTFENNEILREHRTKHVMEGILTEEDLQEIEPKPDDNECEKAPRKRRTDIVGLECQECNKRYTSRKGLLRHIQVHEGKKYLCDICPKKFYRREHLKLHVAKHNMIKPYKCPKCPKRFIKEEQMNNHMLKHERIAKKPKETDTPKRFLCEICSKSFTQSTTLIAHLRAHNGIKPYVCEVCSRPFTTNAYLKMHMRTHTQERPYICQYCSRAFARADTLANHLTSHTGEAKYSCKYCPKHFRRLKSLKEHVFIHTGQRPYACPTCDRRFNNNGSRYAHSKRCKQNLVQGRQNNQISVQDLRVQEQDEQQLQLEETQELRLQQATISQAQIIKPQNIKTITFARPGGTIEQPHVLTNQDVYMPLIFVGGEELIALSEGTKIFTT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -