Ccun011893.1
Basic Information
- Insect
- Chouioia cunea
- Gene Symbol
- -
- Assembly
- GCA_030064505.1
- Location
- JAOPFQ010000005.1:9081661-9082294[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 4.8e-07 0.00073 19.1 0.0 2 40 16 55 15 60 0.91 2 2 0.081 1.2e+02 2.4 0.0 21 31 110 120 109 120 0.89
Sequence Information
- Coding Sequence
- atggttcgaaattacattaaaaaaggATTTAGACAATCACGGTCTGATGATTCTATGAGAACCGCTCTTGAagctgtaataaaaaaggattttAGTATTAAAAGAGCATCTGTTGTTTATAAAGCTCCTCATGCAATACTCTCCAGGAAAGTGTATCAATATCGTCTTGATCCTGGGAGAATAGATGAGTTGCTAGCTAATCCCAAATcAATGAGCCTTCATACAGTATTCAATAAAAGGCAAGAGACTACTCTGTTTAATTACGTTAATGAATTGGAAAGTGCCATGGTTGGAATGACAGGAATAGATATTAGACGCTTAGCTTTTCAACTTGCAGAAAAGTTTAATATTCCTcatagatttaaaaaagaaagtggaTTAGCTGGTGAAGATTGGTTTAGAGGATTCATGAAAAGAAATCCTCATGTAAAAGTACAGGGCAAAGGTGAAGCACCTTATGAAAAAAGTAGAGTGTTTAGTAAAGAGAAagtgtatacatttttttga
- Protein Sequence
- MVRNYIKKGFRQSRSDDSMRTALEAVIKKDFSIKRASVVYKAPHAILSRKVYQYRLDPGRIDELLANPKSMSLHTVFNKRQETTLFNYVNELESAMVGMTGIDIRRLAFQLAEKFNIPHRFKKESGLAGEDWFRGFMKRNPHVKVQGKGEAPYEKSRVFSKEKVYTFF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -