Ccun008615.1
Basic Information
- Insect
- Chouioia cunea
- Gene Symbol
- ttk
- Assembly
- GCA_030064505.1
- Location
- JAOPFQ010000003.1:29549350-29551415[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 1.3e-07 0.00019 20.9 0.0 5 43 208 246 204 248 0.85 2 4 2.5e-12 3.8e-09 36.0 0.0 2 42 255 294 254 297 0.91 3 4 0.0019 2.9 7.6 0.0 19 34 322 337 310 342 0.75 4 4 2.7e-12 4.1e-09 35.9 0.1 5 39 369 403 368 407 0.95
Sequence Information
- Coding Sequence
- ATGCCCAAAACCGACGGGGACTGTGTGGCATCGACCTCGTCGTACTGCTTCACATGGGACAACTATCCAAATCATTTATCGGAGGTAGTCCGCCAGCTTTTGGACGAGAAATGTATGGTCGACGTTACCCTATGTGCAGGCGGCCAGCGTATCCAAGTTCACCGACTAGTTGTATGTGCCTGCAGCGATCTTTTAACgGAATTACTTAGCCAGGTTAATGATGAGTATGTTACGATTATACTGGATGATATCGATGTAAAAGATGTCAAATCAATCGTGGAGTACCTTTATAACGGGGAAGTACGAACGCCagttgaaaatatcaatactTTTTTAGCTGCAGCGCAATCTCTCAAGATACATGGTTTAATGGATaTTAGTCCATTTTCTCCAACAGAATACGAAGAAAATGAAACCCATACCGCCGATGATTCCGAGGAAATACAAATGTTTGATGAATTCACTCAAGAAGACGAGGTCGAAGATGAGGATTTAGACAAGAATGTTATTCAAAACCTCGATGGAATAAACATAGAAACAGTGAAAGATGATGAAACGTCAGATTTTTTGTTGAGAAAACGGCGAAAGGGTGTTTCCAAAAAGGAATACACCGATCAGATGTTAAATAATGCGATAAATCATATTAAAGCTGGCAATTCACTATTGGAAGCTGCTGCAAAATTTCATATACCAAGATCGACCTTGTATATGAGAGCAAAAGTACTAGGCATATCGTTAAGCAACCATAAATCTGATTATACAGCCGATGATATGAAAGCAGCAATAGACGCGGTGATAGCTGGATCAAGTTTACAGAGTGCAGCGGATAATTTTGGTATACCAAAGACAGTTTTGTGGAgaagaatacaaaaagaagGTCATGTGTATAGAACAGAACATAGGAGAAACTATGATgcggaaaaaagagaagctgCTATCAGAGCATTGGAGAGAGGAGAAGCTTTGACAAAAGTAGCTCAAGAATATCAGATTCCAAAAACAACGTTATTTCGAGACAAAGTACGTTTAGTAGATGAAGGAAAATTACCCGAAACAGATATGAAAAAGCGCAAGAGTTATGTGGAAGGTGAGAAACGAATTTTACTGGAAAAAGCAGTAGCTGCATGTAAAAAAGGAGCTATGTCCCAAGCAACAGCCTCTATCACTTTTAATATTCCAAAGACTACAATTTGGAGACGCCTTCAGAGGGATGCAGCTCAAACAGAAGGTACAGATACTAAAAGAGTAATTCCTAAAAAAGGACAATATGAACCGAAAAAGGAAGACGATGTTAAAACTGATGATCTTACCGATTCAAACTTTGAAGTTTATTGTGAAgaTGATTCTGAAATGGATGTTACCTATATTGATGAAACAAACATGTCAGATGAACCAGTGATTATTTTGGCAAGTGGAACTGCAAATGAACTGAATTTAGAGAACAATCAAATAGTAGTCGTGCAAGATggaAATGCAGAAAATTATATTGCTTGTGGACTGGAATTGGATGAAAATGCCTCTTTTGATACTAAAAGTTAA
- Protein Sequence
- MPKTDGDCVASTSSYCFTWDNYPNHLSEVVRQLLDEKCMVDVTLCAGGQRIQVHRLVVCACSDLLTELLSQVNDEYVTIILDDIDVKDVKSIVEYLYNGEVRTPVENINTFLAAAQSLKIHGLMDISPFSPTEYEENETHTADDSEEIQMFDEFTQEDEVEDEDLDKNVIQNLDGINIETVKDDETSDFLLRKRRKGVSKKEYTDQMLNNAINHIKAGNSLLEAAAKFHIPRSTLYMRAKVLGISLSNHKSDYTADDMKAAIDAVIAGSSLQSAADNFGIPKTVLWRRIQKEGHVYRTEHRRNYDAEKREAAIRALERGEALTKVAQEYQIPKTTLFRDKVRLVDEGKLPETDMKKRKSYVEGEKRILLEKAVAACKKGAMSQATASITFNIPKTTIWRRLQRDAAQTEGTDTKRVIPKKGQYEPKKEDDVKTDDLTDSNFEVYCEDDSEMDVTYIDETNMSDEPVIILASGTANELNLENNQIVVVQDGNAENYIACGLELDENASFDTKS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00326516;
- 90% Identity
- iTF_00326516;
- 80% Identity
- iTF_00326516;