Ccun013303.1
Basic Information
- Insect
- Chouioia cunea
- Gene Symbol
- bab2
- Assembly
- GCA_030064505.1
- Location
- JAOPFQ010000005.1:25844420-25866337[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 1.4e-12 2.2e-09 36.8 0.0 1 39 438 477 438 481 0.90 2 4 7e-12 1.1e-08 34.6 0.0 2 39 493 530 492 533 0.94 3 4 9.8e-19 1.5e-15 56.5 0.0 2 45 548 592 547 592 0.97 4 4 1.1e-18 1.7e-15 56.3 0.1 1 42 599 641 599 642 0.97
Sequence Information
- Coding Sequence
- ATGGCCGGGCAGCATTACTGCCTGCGCTGGAACAATTACCAGTCGAACATGACCTCGGTGTTTCACCAGCTTCTACAAACCGAGGCATTCGTTGACGTTACCCTCGCATGCAACGAAGCGTCACTCAAAGCTCACAAgGTGGTATTGTCAGCTTGCAGCTCGTATTTCCAGAAGCTACTACTGTCAAATCCATGCAAACATCCAACGATCATAATGCCACAAGACGTGTGTTTCAACGATCTCAAGTTTATCATCGAATTCGTTTACCGTGGCGAGATCGACGTGTCTCAAGCCGAACTTCAGTCGCTGCTAAAAACGGCCGaccaattgaaaatcaaaggCTTGTGCGAGGTGCCGGAATCACGTGGTGACGTCCCATCGGTGAGTTGTTTAAGCTCGCCACCTCGCGACAGTAGTAGCCCACTGCCAATATCAGGATCGTCATCGTCGCATCATCAACGGATTAATTGTTTTGCCACCGGCAGTGCCGGTGGCGGTAAACTTAAGACCAGTCGGCTTCATCATCATCCAAGATATAAGAGGCCAAAAACAACAGTACGTTCACCCGATCGATTGTTAACcaatcattattatcatcatcatcatcaccttCAACGCAAGTACAAGGAAGAAGATTTCGTTGAGAGCTACGTAAAGGATTGTAACAAGGAGAATCGTCGTGAGAGCTGGCCATCCGAGGATGACGATTGCATGGAGACGACAACACCAGGCGCGTCATTAATCCTGGACACGAGTCAACGCAACGCCAACGGCAACGAATCGCCAACAACAGCTGTAGCAATTGCAGCGGTAGCGACGAcgaccaacaacaacaacaacaaccggGAAAGCAACGCTAACAACGCCGCCCCCACAgctaataacaacaataacgGTGACATGTTTTGTCACACAGGCCTTGGTCATTACGGGCATCACCCAGACCCCACCGAGGTGGACTTGCCGCCTGAAACGCAGCCGACTCCGCCGAGTGCTACCCTTGTTGGCACCACCATAACCCATTTGAGAGACTCGGATCATCACGCTACAGACATACAAAACTGCGATAGCGTGAAGATAAAGTTCGAAACGCTACACACGATGGACTCGTCGGACACAATCGATATCGACAGCCACATGTCGGATCGCGCCAGTGTGAGTTCGGTCAAGACTGAAGATAACATGATGATGATTACACCTGAACTTCTTGGTCTCATGCCTTCGGGTAGTTCGGTACACTCGGATTCGGGTGAAAATAATTCGCGTAGTCATTCTGGACAATCTGGACATCATCATGGTTCGAAATCGTGGACGCAAGAAGACATGGAAGCTGCACTCGAGGCGCTTAGGAATCACGATATGAGTTTAACTAAAGCTTCCGCAACATTTGGCATTCCGTCGACGACACTATGGCAACGAGCGCATCGTTTGGGCATCGATACACCAAAGAAAGACGGCCCAACGAAATCGTGGAGCGACGAAAGTCTCAATAATGCATTAGATGCGTTACGAACAGGAACAATCTCGGCGAACAAAGCATCCAAAGCTTTCGGTATACCATCGAGTACACTTTACAAAATAGCAAGGCGAGAAGGTATAAGATTAGCAGCACCATTCAACGCGAGTCCAACGACATGGTCACCCGCGGATCTTGATCGTGCACTCGAAGCTATTAGAAGTGGACAGACGTCCGTTCAAAGAGCTTCTACGGAATTTGGTATACCTACAGGGACGCTTTACGGTAGATGTAAGAGGGAAGGCATCGAGCTTAGTAGGAGTAATCCGACGCCTTGGAGCGAGGATGCCATGACGGAAGCACTAGAAGCTGTCAGGCTAGGACACATGAGCATCAACCAAGCGGCAATTCATTATAATCTACCCTATTCGTCTCTATATGGTCGTTTTAAAAGAGGAAAGTACGAAGAGCCCGTAGTAAATGATATGTCACAAGATGGTTCGTCGCAACATTTTCATCAGAGTCCAACACAAACCAACCACTCGTCTTCGCTGCCGGAGCCGATGCCTTATCAGGGCAGCTGA
- Protein Sequence
- MAGQHYCLRWNNYQSNMTSVFHQLLQTEAFVDVTLACNEASLKAHKVVLSACSSYFQKLLLSNPCKHPTIIMPQDVCFNDLKFIIEFVYRGEIDVSQAELQSLLKTADQLKIKGLCEVPESRGDVPSVSCLSSPPRDSSSPLPISGSSSSHHQRINCFATGSAGGGKLKTSRLHHHPRYKRPKTTVRSPDRLLTNHYYHHHHHLQRKYKEEDFVESYVKDCNKENRRESWPSEDDDCMETTTPGASLILDTSQRNANGNESPTTAVAIAAVATTTNNNNNNRESNANNAAPTANNNNNGDMFCHTGLGHYGHHPDPTEVDLPPETQPTPPSATLVGTTITHLRDSDHHATDIQNCDSVKIKFETLHTMDSSDTIDIDSHMSDRASVSSVKTEDNMMMITPELLGLMPSGSSVHSDSGENNSRSHSGQSGHHHGSKSWTQEDMEAALEALRNHDMSLTKASATFGIPSTTLWQRAHRLGIDTPKKDGPTKSWSDESLNNALDALRTGTISANKASKAFGIPSSTLYKIARREGIRLAAPFNASPTTWSPADLDRALEAIRSGQTSVQRASTEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMTEALEAVRLGHMSINQAAIHYNLPYSSLYGRFKRGKYEEPVVNDMSQDGSSQHFHQSPTQTNHSSSLPEPMPYQGS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00326489;
- 90% Identity
- iTF_00326489;
- 80% Identity
- iTF_00326489;