Basic Information

Insect: Choristoneura rosaceana
Gene Symbol: stc
Assembly: GCA_037349165.1
Location: JAZBNJ010000034.1:12201790-12223832[+]

Transcription Factor Domain

TF Family: zf-NF-X1
Domain: zf-NF-X1 domain
PFAM: PF01422
TF Group: Zinc-Coordinating Group
Description: This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 2 3.5e+04 -4.4 1.6 15 19 566 570 565 570 0.81

2 14 0.036 6.4e+02 1.5 1.5 2 10 598 606 598 606 0.93

3 14 0.00012 2.2 9.3 20.0 4 19 614 629 612 629 0.93

4 14 4.4e-08 0.00078 20.4 13.4 1 19 665 683 665 683 0.94

5 14 0.97 1.7e+04 -3.1 0.2 8 11 688 691 687 691 0.86

6 14 0.00014 2.4 9.2 11.3 1 19 724 742 724 742 0.97

7 14 1.6e-05 0.28 12.2 11.8 1 19 783 805 783 805 0.87

8 14 2 3.5e+04 -5.4 2.2 6 10 835 839 835 839 0.94

9 14 0.0045 79 4.4 6.8 1 11 845 855 845 856 0.94

10 14 0.11 1.9e+03 -0.1 0.2 4 10 860 866 859 868 0.91

11 14 6.1e-06 0.11 13.5 13.5 3 19 874 890 872 890 0.91

12 14 0.00026 4.6 8.3 9.3 9 18 936 945 934 946 0.92

13 14 1.5e-08 0.00026 21.9 14.7 1 17 982 1000 982 1006 0.83

14 14 0.0035 62 4.7 6.8 1 12 1012 1022 1012 1037 0.86

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	2	3.5e+04	-4.4	1.6	15	19	566	570	565	570	0.81
2	14	0.036	6.4e+02	1.5	1.5	2	10	598	606	598	606	0.93
3	14	0.00012	2.2	9.3	20.0	4	19	614	629	612	629	0.93
4	14	4.4e-08	0.00078	20.4	13.4	1	19	665	683	665	683	0.94
5	14	0.97	1.7e+04	-3.1	0.2	8	11	688	691	687	691	0.86
6	14	0.00014	2.4	9.2	11.3	1	19	724	742	724	742	0.97
7	14	1.6e-05	0.28	12.2	11.8	1	19	783	805	783	805	0.87
8	14	2	3.5e+04	-5.4	2.2	6	10	835	839	835	839	0.94
9	14	0.0045	79	4.4	6.8	1	11	845	855	845	856	0.94
10	14	0.11	1.9e+03	-0.1	0.2	4	10	860	866	859	868	0.91
11	14	6.1e-06	0.11	13.5	13.5	3	19	874	890	872	890	0.91
12	14	0.00026	4.6	8.3	9.3	9	18	936	945	934	946	0.92
13	14	1.5e-08	0.00026	21.9	14.7	1	17	982	1000	982	1006	0.83
14	14	0.0035	62	4.7	6.8	1	12	1012	1022	1012	1037	0.86

Sequence Information

Coding Sequence: ATGTCTCAATGGAACAATTCTTACGCTTATAACCAGCAATACCAAGGCTCGGGCACATGGAATGGAGAATTAGGCAACCAATTTTCTAACCAACAATTCTATCCAAATGCCCAACCAACCTATGAGCCTAACAATCAGTATGTTAACTTCCAAGAGTTTTTGTCTCAGATGCAAGGCAACAATGCCGCAGCCGGAGGTTCTGTTGCCTTCAACAATGCTCAGTATCAAAATTACCCTAGTAATCAGTATGAATACCAAACTGCACCATCACCCCAGAATCCTAATAATTACTATCCACCACGCTCAAATGCTGTAAGTGCTGCAGAAGGTTATCAAACCACAGCACAAAGCCGTGACCGTAACGCACCAGACAGTAATTATGACAACCATATGGTATTCAAATCTAATCTCACACCAACTGCCACAGAATTTGTGCCAAAAGGGATGTCACAAGTAGGTCAGTCTGGAACTGTGAACACAAACGCACCGGATGTCTCTATAGCATATAATGGAGTGTCAGAATCCAGGAGAGAAAACAATACAGAAAGCAGTTGGCGAGGGAAACAGGAGTCCAATAGTCAAAGTAGTGAGCATAATGGCCCCAATGATCCTGAAGGTGTTGATTCTGAGTCTAATTCTTATAGAGATGGTTCCAGAAAACAAAGTTCTGAGTATCATAATCGTAATTATGACCAAAATAGCAGAAGGAACGAACCGAATGGCCGTAATACTCGAAGGAACGAGTCCAGCCGCCAATATGAAGGCAGCAGTCGCAAGTATGATAGTCATAGCCAAAATAATGAATCTAACTACAGAAGCAATGATTCTGACCGTAATTATGATTCAAATGAACGAAACTATTCAAGTCGCAACAATGACTCTGATACCCGTCAATATGACTCCAATGGTCGCAATTATGACAGTGGTGGCCGTAATTACGACAATAGAAGGCGCAACTACGACTCTAATAATCGCCATTATGAAGGCGGTAATCGTAATAATGATTCTAATAGTCGCAGTTATGACGCCAATAGTCGCAACAATGATCCTGGACCTGCAAGCCGTAACACTGATTATAATCGTAGAAGCAACTTCAATGGGCGGGACAGTGATTACAATAGTCGAAACAATGACTACAATAATCGTAATGAAGACTACAACAGCCGCAACTATGACTCAAATAATCGTAACTATGAGACTAACAGGGGCCAAGTAAAAAATTCcaaactaaaaaataaagagCCTGACAATCGAACATTTTATAATAGTTCAGTTAATAAAAGCAGTCAAGATGTCAGAAGTGGTCGAAGTGACAGAGGTGACAGTTCAGCAAGAAACAGAAACTGGGCTGGAAGTCAGAGAGTCAGGCCTACAGAGAGAACAGATGATGAACAATATGCTAAAGGTTACTTAGATAACCAGGAAGACAGATATTCAAGAGGATCAAGAGCAGAAGCTATGTTTAGTCCCTCAAGGAATAGACACAGACAGATGGATCAAGGagGGAACTCGGACCTAACCCAGCGGGAGCGTCTCTCAGAGCAACTAGACAAGGGCACACTGGAGTGCCTTGTGTGCTGCGAGCGCGTGCGCCAGACGGATGCCGTGTGGGCCTGCGGGAACTGCTATCATGTGCTGCACTTACGATGCATCAGGAAGTGGGCCATGAGCAGTGTCATTGAGGGCAAATGGCGCTGCCCGGCGTGTCAGAACACGAGCGACGAGATCCCCAGCGAGTACCGCTGCATGTGCGGCGCCGTGCGAGCGCCCGACTACcagcgcggcgccggcggcgcgcACACCTGCGGacagGCATGTCAGCGCTCTCGCTCGTGCCCGCACCCGTGCTCGCTGCCCTGCCACCCGGGGCCCTGCCCGCCCTGCCAGGCTACTGTCACCAGGAAATGCGGTTGCGGAGCGGAGACGCGCTCAGTGGTGTGCAGCAGCAAGCTGGCGCAGCTGTGCGGGCGCGTGTGCGAGCGGCGGCTGGCGTGCGCCGCGCACCGCTGCGCGCAGCCGTGCCACGAGGGGCCCTGCGACCCCTGCACCAGCACCGTCGACCAAGTATGCCACTGTCCGGCCGCGAAGTCCCGCTCGGTGCCGTGCACGGCGGAGAGCGGCGGCACGGCGGCGTGGTCGTGCGGCGCGGAGTGCGCGCGCGTGCTGGCGTGCGGCGCGCACGTGTGCCGCGAGCCGTGCCACGCGCCGCCCTGCGCCGCCTGCCGCCTGCTGCCCGCCGCCGTGCCCACCTGCCCCTGCGGCCGCACCAAGCTGGACCCGGAGGCGCGCAAGACGTGCACGGACCCAGTGCCGCTCTGCGGGAATATCTGCGCCAAGCCGCTGCCGTGCGGGCCCGCCGGCGACAAGCACTTCTGCAAGCTCGACTGCCATGAAGGTCCGTGTCCCGTGTGCCCCGACAAGACGCTGCTGCCGTGCCGCTGCGGGCACTCCAGCCGCGAGGTGCCGTGCGCAGAACTGCCGCAGATGCTCGACAACGTGTTCTGTCAGAAGAAATGTAACAAGAAGCTGTCTTGCGGGCGGCACCGCTGCCGCGCGTCGTGCTGCGCGGCGACGTCGCACCGCTGCGGCGTGGTCTGCGGCCGCCTGCTGGCCTGCCAGCTGCACCGCTGCGAACAGTTCTGCCACACCGGCCACTGCGCGCCTTGCACGCGCGCCAGTTTCGAGGAGCTGACGTGCGAGTGCGGCGCCGAGGTGATCCTGCCGCCGGTGCCGTGCGGCGCCAAGCGGCCCGCGTGCTCGGCGCCgtgccgccgcccgcgcgcctgCCCGCACCCGCCGCACCACGCCTGCCACGAGGGCGACTGCCCGCCCTGCGTCGTGCTCACCGCCAAGCGCTGCCACGGCCAGCACGAGGAACGCAAAACCATCCCGTGTTCTCAAGAAGAATTCTCTTGCGGGCTGCCGTGCGGAAAACCTCTGCCTTGTGGAAAGCACACCTGCCAAAAAATCTGTCATAAAGGACCTTGCGACGCCGGCAAATGCACCCAGCCGTGCAACGAGAAACGTCCGAGCTGCGGGCACCCGTGCGCGGCGCCGTGCCACGCCGCGGAGGCGGGGCCGGCGGCCTGCCCCAGCGCGGCGCCGTGCCGCAAGCTGGTGCGCGCCACGTGCCCGTgcggccgccgcgccgccgagCGCGCCTGCGCCGACAACGCCAGGGATCTCGCCAAAATAATGAGCGTACTGGCAGCTTCGAAAATGCAAGAAGGTGGTTCCGTCGACCTGTCCGAAGTTCAACGACCCGCTTCTATGTTGAAAACGCTGGAGTGCGACGACGAGTGCCGCGTGGAGGCGCGCACGCGCCGGCTGGCGCTGGCGCTGCAGATCCGCAACCCCGACGTGTCGGCCAAGCTGGCGCCGCGCTACAGCGACCACGTGCGCGCCACCGCCGCCCGCGAGCCCGGCTTCGCGCGCCAAGTGCACGACCGGCTCACCGAGCTGGTGCAGCTGGCCAAGaagTCGAAGCAGAAGACGCGCGCTCACTCGTTCCCGTCGATGAACTGGCAGAAGCGTCAGTTCATCCACGAGCTGTGCGAGCAGTTCGGCTGCGAGTCCGTCGCCTACGACGCCGAGCCCAACCGGAACGTCGTCGCCACCGCCGACAAGGAAAAGTCGTGGCTGCCGGCCATGAGCGTGCTGGAGGTGCTGGCGCGGGAGGCCGGCAAGCGCAAGGTGCCCGGGCCCGTGCtgcgcgcgcccgcgcccgcgcccgccgccgccgccaccacCGCCGCCAAGTCGGGCAGCGGTTGGGCCACGCTCACGTCTACCAACgcgtgggcggcgcgcgcgcagaaGAAGGCCGACGATCCTCCCAAGATCGATTACTTCGACAACCCGCCTGACAACTAG
Protein Sequence: MSQWNNSYAYNQQYQGSGTWNGELGNQFSNQQFYPNAQPTYEPNNQYVNFQEFLSQMQGNNAAAGGSVAFNNAQYQNYPSNQYEYQTAPSPQNPNNYYPPRSNAVSAAEGYQTTAQSRDRNAPDSNYDNHMVFKSNLTPTATEFVPKGMSQVGQSGTVNTNAPDVSIAYNGVSESRRENNTESSWRGKQESNSQSSEHNGPNDPEGVDSESNSYRDGSRKQSSEYHNRNYDQNSRRNEPNGRNTRRNESSRQYEGSSRKYDSHSQNNESNYRSNDSDRNYDSNERNYSSRNNDSDTRQYDSNGRNYDSGGRNYDNRRRNYDSNNRHYEGGNRNNDSNSRSYDANSRNNDPGPASRNTDYNRRSNFNGRDSDYNSRNNDYNNRNEDYNSRNYDSNNRNYETNRGQVKNSKLKNKEPDNRTFYNSSVNKSSQDVRSGRSDRGDSSARNRNWAGSQRVRPTERTDDEQYAKGYLDNQEDRYSRGSRAEAMFSPSRNRHRQMDQGGNSDLTQRERLSEQLDKGTLECLVCCERVRQTDAVWACGNCYHVLHLRCIRKWAMSSVIEGKWRCPACQNTSDEIPSEYRCMCGAVRAPDYQRGAGGAHTCGQACQRSRSCPHPCSLPCHPGPCPPCQATVTRKCGCGAETRSVVCSSKLAQLCGRVCERRLACAAHRCAQPCHEGPCDPCTSTVDQVCHCPAAKSRSVPCTAESGGTAAWSCGAECARVLACGAHVCREPCHAPPCAACRLLPAAVPTCPCGRTKLDPEARKTCTDPVPLCGNICAKPLPCGPAGDKHFCKLDCHEGPCPVCPDKTLLPCRCGHSSREVPCAELPQMLDNVFCQKKCNKKLSCGRHRCRASCCAATSHRCGVVCGRLLACQLHRCEQFCHTGHCAPCTRASFEELTCECGAEVILPPVPCGAKRPACSAPCRRPRACPHPPHHACHEGDCPPCVVLTAKRCHGQHEERKTIPCSQEEFSCGLPCGKPLPCGKHTCQKICHKGPCDAGKCTQPCNEKRPSCGHPCAAPCHAAEAGPAACPSAAPCRKLVRATCPCGRRAAERACADNARDLAKIMSVLAASKMQEGGSVDLSEVQRPASMLKTLECDDECRVEARTRRLALALQIRNPDVSAKLAPRYSDHVRATAAREPGFARQVHDRLTELVQLAKKSKQKTRAHSFPSMNWQKRQFIHELCEQFGCESVAYDAEPNRNVVATADKEKSWLPAMSVLEVLAREAGKRKVPGPVLRAPAPAPAAAATTAAKSGSGWATLTSTNAWAARAQKKADDPPKIDYFDNPPDN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00342830;
90% Identity: -
80% Identity: -