Basic Information

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 7 0.064 5.1 8.7 1.1 1 23 91 113 91 113 0.98

2 7 0.0031 0.25 12.8 1.8 1 20 117 136 117 139 0.91

3 7 5.7e-05 0.0045 18.3 3.2 1 23 144 167 144 167 0.97

4 7 0.074 6 8.5 0.1 1 23 173 196 173 196 0.86

5 7 0.013 1 10.9 6.4 1 23 202 225 202 225 0.96

6 7 0.0037 0.3 12.6 0.2 1 23 231 253 231 253 0.93

7 7 7 5.6e+02 2.3 0.1 1 9 259 267 259 267 0.92

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	7	0.064	5.1	8.7	1.1	1	23	91	113	91	113	0.98
2	7	0.0031	0.25	12.8	1.8	1	20	117	136	117	139	0.91
3	7	5.7e-05	0.0045	18.3	3.2	1	23	144	167	144	167	0.97
4	7	0.074	6	8.5	0.1	1	23	173	196	173	196	0.86
5	7	0.013	1	10.9	6.4	1	23	202	225	202	225	0.96
6	7	0.0037	0.3	12.6	0.2	1	23	231	253	231	253	0.93
7	7	7	5.6e+02	2.3	0.1	1	9	259	267	259	267	0.92

Coding Sequence: atgaataaaacggACAAATGCACACTAATATCAAAAGTATTAACAGAGTACACATCGGATTTGGATGAGAAATACAAAGAGGACAAAATGGCagatacaaaattaaatgttaatgTCAAAGAAGATATAAAATACCCCGACAGCATAAAGTTAGAGCAGGATGCAAAATTAACCATCATATTGGAGCCGGAGAAACGTATAACTGTGCCTCGGAAAAAGAAAAGAGAGACGACAGTGAAGAGTGAGATGCAGTATGAAGTGACAAAGGATTTCAAGTGTACAGTGTGCTCTGTTGTGTTACCCAATGTGTATGTGTATCACACACACATGAACAGACACTTCCCTAATCATATATGCGAGACTTGTGGTAAAGggttCCTCACGAAGAAGAGGTTGAAGCGACACATGCCGTCTCACATCAAAGGCCCTTTCACCTGCAAGGAGTGCGACACTGAGTTTCGGAACTATAACACACTAAATTCACACAGGCAGCGCAAACACAAATCCATCGAGCTGTACGCTTGCCCGTACTGTCCGGCGCGTTTCGGCACACTCACGCGTCGTGCGCGCCACCTCGCGGACACGCACGACGCGCGCGCGCCACATCGCTGCCACATCTGCCACAAACGGTTCCTTCTGGCCGGTAATCTATCAACTCATCTACGTAACAAGCACCTCAAAGTGAAGCGCCACTTCTGCGTGGAGTGCGGCGCGGGCTTCTACCAGAAGCAGGAGCTGCGCGGGCACCTCGCCGCGCACACCGGCCGGAACGAGTTCCAATGCGCGCTGTGCCCCAAGAGCAACAAGATCATGCTCGTGCCGGCATTTTTCTCGAACTCCTTCTATCTCCATGTTGGCTGGCGCTCGGCGGGCCGCGTTTAA
Protein Sequence: MNKTDKCTLISKVLTEYTSDLDEKYKEDKMADTKLNVNVKEDIKYPDSIKLEQDAKLTIILEPEKRITVPRKKKRETTVKSEMQYEVTKDFKCTVCSVVLPNVYVYHTHMNRHFPNHICETCGKGFLTKKRLKRHMPSHIKGPFTCKECDTEFRNYNTLNSHRQRKHKSIELYACPYCPARFGTLTRRARHLADTHDARAPHRCHICHKRFLLAGNLSTHLRNKHLKVKRHFCVECGAGFYQKQELRGHLAAHTGRNEFQCALCPKSNKIMLVPAFFSNSFYLHVGWRSAGRV

Sequence clustering based on sequence similarity using MMseqs2