Basic Information

Insect: Choristoneura rosaceana
Gene Symbol: -
Assembly: GCA_037349165.1
Location: JAZBNJ010000050.1:3810765-3822662[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.0035 0.28 12.7 2.6 3 23 417 438 415 438 0.97

2 10 0.032 2.5 9.6 3.8 1 23 452 474 452 474 0.97

3 10 0.55 44 5.8 2.1 1 12 478 489 478 501 0.77

4 10 0.44 35 6.0 0.3 3 23 507 528 506 528 0.95

5 10 0.033 2.6 9.6 1.7 2 20 532 550 531 553 0.93

6 10 0.083 6.6 8.3 0.8 3 21 565 583 564 588 0.93

7 10 0.073 5.8 8.5 1.1 2 23 597 619 596 619 0.94

8 10 8.4e-05 0.0067 17.8 3.3 1 23 625 648 625 648 0.94

9 10 0.0033 0.26 12.7 0.3 3 23 659 679 658 679 0.98

10 10 0.0001 0.0084 17.5 0.3 1 23 685 708 685 708 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.0035	0.28	12.7	2.6	3	23	417	438	415	438	0.97
2	10	0.032	2.5	9.6	3.8	1	23	452	474	452	474	0.97
3	10	0.55	44	5.8	2.1	1	12	478	489	478	501	0.77
4	10	0.44	35	6.0	0.3	3	23	507	528	506	528	0.95
5	10	0.033	2.6	9.6	1.7	2	20	532	550	531	553	0.93
6	10	0.083	6.6	8.3	0.8	3	21	565	583	564	588	0.93
7	10	0.073	5.8	8.5	1.1	2	23	597	619	596	619	0.94
8	10	8.4e-05	0.0067	17.8	3.3	1	23	625	648	625	648	0.94
9	10	0.0033	0.26	12.7	0.3	3	23	659	679	658	679	0.98
10	10	0.0001	0.0084	17.5	0.3	1	23	685	708	685	708	0.95

Sequence Information

Coding Sequence: atgtacgCCGTAAAAAGAGAATTTGGCGAAGAAATATGCCGCGGCTGCTTTAGTAAGGACCGGAGACTGTCGCCGCTGgcaaattataatttgtatttcAGTCTTTTGGATGACAGACAAAAGTTGGAGGCATTGAAGTCTCCGACGATGCAGCTGTGCTGGGAATGCAATGCCTCGCTGCGCAGGTTGAAGTTGTTCCAGACGCAGGTGCAGCAGGCTCACAGGCTGCTGTATGAACTGGTGGAATCGGGGCAATCGcctgcTGAAGGGTTATCCCAACTTTGCGTTtcttataaacaagattttgaTGTTATAATTGAAGATGATCTTGATGATATTGAAGAACAATCAATAATTCCAGTCAAAGAAGAAACTAAACTTCAAACAGATgtgtttaatgaaaatttaaattcagaTGATGATCACAATTTTGAAGATACTGATACCTTAGAGACACATACTGAATTAGATTTGTTCGTAGAAACAATGGAGAACAGTATAGTAGAAACTATACCGAGAAAGAAATACAAACGTAAGCTTAAGACTAAGAGTTCTCTGgaaaccaaaattaaaaagaaaaaaattgaaactGTTCCAGTTAAAAAAGGGAATAGATCAGGTTTGAGGAGTTCTGGAGATATTATTCGTCCATTGTATCCAAATAGAAACAATGACAATGTTAATAAAAACGATGTGAAAAAGACTAAAATTAATGTaggtaatacattaaaaagaaaattgaaacaATCAAATCGTAAGAGATGTTTGAATCGTAAAGATCCAAGTCAAAATGCCAAAGTGAAGAAAGAAAACCAAACACCAGATGTTGTAGATACAGCACCAAAGGATTCACAGGATGATGTCACTAATGACGATGGTGCTCAAGCAAGCACAGATTTAGAGCTAGAAAATGTAGAGGATCAAAATACAAAGgagaaaattgaaattgatacTCCTAATATTGAACAAGAAAACAATTCAGATGAAACTCACAGTGAAACAGATGACAGTGATCCAGATTTTGAAGAAAAAGATGGTATAATTTGTTATAAAACTTTAAGTAATAGTGTAAAAATTAAGAGAAAAGGAGTAGTAACTAGAGACAAGTTGTTGAACAGCGTTTGCATCACATTTAATATAATTGAAGAATTGGATGAATATTTTACTAATGTTGATTTAGACGCTGAAGAAGTCAAACATATTCTAGATAATGAACTTTCATATGAAAGTGAACAACAGCCGTACGGCTGCAATTATTGTGGTATGTGCTTCCAATTGAACAGAACGTTAATCATACATAAAAGAACCCGCCATAAGCAAATAGCCAGGTGCACCAATCCGGTGTACTTGATGTACCGTTGCAACATTTGCCATAAAATTGTAAGAAAAGAACACACAGAGGCACACATGAAGTATTTGCACCGCTGGCGGTACTATTGCAAGGAGTGTGACAAAGCATTTTGGGACAAAGAAGAAGGCAGGAGTCACTTTATGGAGTGTCATAAGCAGAAACGTAGCTGTAACCTGTGCGCTTACATGGGCTCGACTACGAGAGCTATGGAGGCGCATATGAGACAACGGCACATCCTCGTGCCGTGCGACATTTGCGGCAAGAAGTCAAGCGGCATGCACAATCTGAGGGTGCACCGGCTGTGCCACGAGACGGACGGCAGCGCGCCCGAACAGCGCTACTGCGTGACGTGCGACAAACAGTACCCGACCGTGCACACTTTCGAGAACCATCTTAGGAACAGCTACGTGCATACTGGAAAGATGCCGGAAAGAATCCCCTGCACGAAATGCGGCAAGTTGATGGCGGACAAACATAGTTTGCAAATGCACTACGACCGATTCCACAGCGACAAGACGAGGTTCCAGTGCCCGCACTGCGACAAATATTACTCTCGCAAGTGTGGGCTTAGCAAGCATATTGAAGCCGTGCATCTGAAGAAGAAGCCGCCCAAAGACAAACTGTGCAGCATTTGTGGCCGCGGCTTCGCTtacgcTCGCACCCTGAGGTTCCACGTGCGCACGCACACAGGCGAGCGCCCCCACGAGTGCCCGCACTGTCCGGCCGCGTTCGCGCAGCCCTACCCGCTGCGGAAGCACCTCGCCTCGCAACATGGTGAAGCCCCCGCACTAAACAAAGAGGCCCCGACACAAGCGTGA
Protein Sequence: MYAVKREFGEEICRGCFSKDRRLSPLANYNLYFSLLDDRQKLEALKSPTMQLCWECNASLRRLKLFQTQVQQAHRLLYELVESGQSPAEGLSQLCVSYKQDFDVIIEDDLDDIEEQSIIPVKEETKLQTDVFNENLNSDDDHNFEDTDTLETHTELDLFVETMENSIVETIPRKKYKRKLKTKSSLETKIKKKKIETVPVKKGNRSGLRSSGDIIRPLYPNRNNDNVNKNDVKKTKINVGNTLKRKLKQSNRKRCLNRKDPSQNAKVKKENQTPDVVDTAPKDSQDDVTNDDGAQASTDLELENVEDQNTKEKIEIDTPNIEQENNSDETHSETDDSDPDFEEKDGIICYKTLSNSVKIKRKGVVTRDKLLNSVCITFNIIEELDEYFTNVDLDAEEVKHILDNELSYESEQQPYGCNYCGMCFQLNRTLIIHKRTRHKQIARCTNPVYLMYRCNICHKIVRKEHTEAHMKYLHRWRYYCKECDKAFWDKEEGRSHFMECHKQKRSCNLCAYMGSTTRAMEAHMRQRHILVPCDICGKKSSGMHNLRVHRLCHETDGSAPEQRYCVTCDKQYPTVHTFENHLRNSYVHTGKMPERIPCTKCGKLMADKHSLQMHYDRFHSDKTRFQCPHCDKYYSRKCGLSKHIEAVHLKKKPPKDKLCSICGRGFAYARTLRFHVRTHTGERPHECPHCPAAFAQPYPLRKHLASQHGEAPALNKEAPTQA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -