Cros020297.1
Basic Information
- Insect
- Choristoneura rosaceana
- Gene Symbol
- -
- Assembly
- GCA_037349165.1
- Location
- JAZBNJ010000029.1:2486861-2492211[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.36 29 6.3 0.0 2 23 92 113 91 113 0.93 2 19 0.0029 0.23 12.9 0.2 1 23 135 157 135 157 0.97 3 19 0.053 4.3 8.9 1.2 1 22 161 182 161 184 0.88 4 19 0.11 8.4 8.0 1.0 2 21 190 209 190 210 0.93 5 19 0.18 15 7.2 0.8 2 23 218 240 218 240 0.93 6 19 0.00086 0.069 14.6 0.4 2 23 274 296 273 296 0.95 7 19 2.2 1.7e+02 3.9 0.6 2 23 321 343 320 343 0.90 8 19 0.19 16 7.2 0.3 1 20 365 384 365 385 0.94 9 19 9.5 7.6e+02 1.8 0.2 3 23 416 437 415 437 0.79 10 19 0.37 29 6.3 0.5 2 23 481 503 480 503 0.92 11 19 0.78 62 5.3 0.2 2 23 528 550 527 550 0.92 12 19 2.8 2.2e+02 3.5 2.0 3 23 574 594 573 594 0.96 13 19 8.4e-05 0.0067 17.8 2.2 1 23 598 621 598 621 0.95 14 19 0.21 17 7.1 0.4 3 21 628 646 627 647 0.94 15 19 0.24 19 6.9 1.6 3 23 656 677 654 677 0.93 16 19 0.00087 0.07 14.6 0.6 1 23 684 707 684 707 0.95 17 19 0.041 3.3 9.3 1.7 1 23 712 734 712 734 0.96 18 19 1.3e-05 0.001 20.4 0.4 1 20 740 759 740 762 0.94 19 19 0.0053 0.42 12.1 1.1 1 23 768 791 768 791 0.94
Sequence Information
- Coding Sequence
- ATGGATAGGAACCAACTGaattctttcttctttttaggtATAGAATGGATGAACCGGGTCGCCAAGCGGAATGCGACTGTCATACTGAAGCATTCCTCTGCCTATCCGTTCCAGCAGACGTCTAACATTCTCCGGTGTTGTTTCTGTTTAGATGTATACGAAAAACCCCAAGAGTTCAGAGAACATATGGATTCTCAACACCCTGATGTTGACAAGTCGGACTTCCCTTCAAACCAATCTGATAACCTGGTCCGCGTTGATATCACAGACTTGCATTGCACTGTCTGCTCTGCTGGTTTCGAAATGCTAGACGATCTGGCGGCACATTTAGTTGAACATGATCTAGATATAGATAACACTGAACAGATCGCTCTGGTGCCTTTCAAACTTGATAGCGATCGTTTCGTATGCGTCGTTTGCGAGAAAGTCTTTCCGGGCTTCTTCCAATTGTCTAGACATACCGTCACACACTTCAGCAATTACACATGTATTGAGTGCGGATGTTCATTCGAGACTCTATCAGGGCTCCGTTACCACGAAATATTTAGTCATAAGGCATCCAAAAACACATGCAGGGTCTGCATGAAATCATTCTCGACTAGGGATGAAAAGAAGAAGCATGTTAAGGAAACCCCGGCATGTATGCCTGCGAAGTGTTACATTTGCAAAGAGCGCCTCCCATCCTGGGATCATAAGGAAAAACATTTAATAGAGATGCACGACATCCTTGGATGGAGTCGGGATGCTGCCAAGCTGAACGCCCAAATAATACTGAGACACTCGACGGCGTATCCGTTCCTGCAATCTTCTAACTCGTTGAGATGCTGTTTTTGCCCGGAGGTTTTCAACGATCCCACGCTTTTTAGAGCTCACATGGACGTCATACATATGGGCGTTGACAGGTCCACATGCAACAAAGCAAACCTTGATACGCAGACACGTGTTGACGTCACAAACCTTCGTTGCGCAAAATGCATAAAAAAATTCACCTCTATTGAAGCCGTCGCTAAACATTTACACGACGAACATGAACTCGAAATCCAGTTAAGCCAAAGCCTAGGTCTTGTACCATTAAAGCTCGAGAAAGATCGCTTCGAATGCGTCGTTTGTTCTCAAAAATTCACAAGCACTATGCAAGTGTCCAGGCATACCGACGATGAACAAGCCGCCGCGAGACGTAACGGTCAGGTAGTGGTTCAATTTACCACGGCGTATCCGTTCAAGATCCCTGAGTCTTCCATGGTGTGCGTTTATTGTTGCGATGGGTTCGAGAACCCCATAGACTATAGAAAACACATGGAAGACGAACATAAGTCGTTTAAAGTTAACCTCGCTTTCATTCATTGCGACAACGATGCCTATCTCAACGCGAAACGGAACGCCGAGATTATCGTGAAATATTCGACTGCTTACCCGTTCCGACTTCCAGAGAATTCTATGGTTTGTGTGTACTGCTGTGAGGGTTTCGATGACCCTACTCTGTATAGGAAACATATGAGCGACGAACATGAAACGTTCAAAGTGCGTATGGCATTCGTCCACTGTAGCGAAGGCTTTATTAAAGCAGACTGCACAGAGCTGCGCTGTCGACTCTGCTCGGAACCCTTCGACAACTTAGAAGCTGTCGCTAGCCACTTGCACTTAGAACACGACATGAAATTAAATCTCAATTTTGAGCTAGGCATGCAACCATTTAAACTTGAAAAAGACAAACTCCTTTGTGCTATGTGCGATATGAAGTTCCCTTGCATTCGCCAACTTAGCAGACACACGCAATCCCATTTTCTTAAACACACCTGCGATACATGCGGCAAATCTTATGCTACCATAACGACGTTGAAAAACCATATTAGATTCTCCCACGCCGGTAATGAACGAATCTGTAGGAAGTGTAGAATGACGTTCTCCACTTTAGAAGCGAAAAGAGAACATTTGCGAGTATCATCTAAATGTTGGTCTCATTTATGTATGTTTTGCGGCGAGCGATTTATGACATGGACGCTGAAGCAAAGCCATTTGAATCAAGTTCATAAAGCGCCTAAAAGATCCCATCCTTGCCCTGAATGTGGCGAGGTGTTCGCTGAACGAAAAAAATATCGTATACATTTCAAAATATCACACACAGACGATAATTTTACCTGTACTTGTTGCGGTTTGAAATTCGACACTAAGCGGGGTCTCGAGGAGCACAGGGTTGTGCATACGAAAGAGAAATTGTTTCCTTGCACAGTGTGCTCGAAATCGTTTCCTAGGAAAAAGAACTTGGCTCAGCATATGTGGATTCATAGCGAGTATAAGAGGTTCGAGTGTGTGCCTTGCAATAAACAGTTTAATCAGCGAGTCAGTTGGCGCACGCACATGAAATCTTACCATTCCGATTTAGTTGATTTTGATGGCAAACAAATGCAGGTTGATAAGCTCAAAGTGCGATCTATGACTTATTTGACGGATTTTAAAAACACTTAA
- Protein Sequence
- MDRNQLNSFFFLGIEWMNRVAKRNATVILKHSSAYPFQQTSNILRCCFCLDVYEKPQEFREHMDSQHPDVDKSDFPSNQSDNLVRVDITDLHCTVCSAGFEMLDDLAAHLVEHDLDIDNTEQIALVPFKLDSDRFVCVVCEKVFPGFFQLSRHTVTHFSNYTCIECGCSFETLSGLRYHEIFSHKASKNTCRVCMKSFSTRDEKKKHVKETPACMPAKCYICKERLPSWDHKEKHLIEMHDILGWSRDAAKLNAQIILRHSTAYPFLQSSNSLRCCFCPEVFNDPTLFRAHMDVIHMGVDRSTCNKANLDTQTRVDVTNLRCAKCIKKFTSIEAVAKHLHDEHELEIQLSQSLGLVPLKLEKDRFECVVCSQKFTSTMQVSRHTDDEQAAARRNGQVVVQFTTAYPFKIPESSMVCVYCCDGFENPIDYRKHMEDEHKSFKVNLAFIHCDNDAYLNAKRNAEIIVKYSTAYPFRLPENSMVCVYCCEGFDDPTLYRKHMSDEHETFKVRMAFVHCSEGFIKADCTELRCRLCSEPFDNLEAVASHLHLEHDMKLNLNFELGMQPFKLEKDKLLCAMCDMKFPCIRQLSRHTQSHFLKHTCDTCGKSYATITTLKNHIRFSHAGNERICRKCRMTFSTLEAKREHLRVSSKCWSHLCMFCGERFMTWTLKQSHLNQVHKAPKRSHPCPECGEVFAERKKYRIHFKISHTDDNFTCTCCGLKFDTKRGLEEHRVVHTKEKLFPCTVCSKSFPRKKNLAQHMWIHSEYKRFECVPCNKQFNQRVSWRTHMKSYHSDLVDFDGKQMQVDKLKVRSMTYLTDFKNT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -