Cros030440.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Choristoneura rosaceana
Gene Symbol
Dnal1
Assembly
GCA_037349165.1
Location
JAZBNJ010000050.1:1844085-1853552[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 9 9.8e-06 0.00079 20.7 0.8 1 23 421 443 421 443 0.97
2 9 0.037 3 9.4 0.6 1 23 465 487 465 487 0.96
3 9 4.4e-06 0.00036 21.8 0.4 1 23 510 532 510 532 0.99
4 9 0.0012 0.097 14.1 0.0 1 21 538 558 538 559 0.96
5 9 0.0053 0.43 12.1 1.1 2 23 642 663 641 663 0.96
6 9 0.00011 0.009 17.4 2.2 1 23 669 692 669 692 0.98
7 9 0.00039 0.031 15.7 1.8 1 21 698 718 698 719 0.94
8 9 0.0059 0.47 11.9 2.1 1 23 729 751 729 751 0.95
9 9 0.0023 0.18 13.2 1.2 1 23 757 779 757 779 0.97

Sequence Information

Coding Sequence
ATGGCCGCTAAGGCAACTACTATAAAAGAAGCAATAAAACGATGGGAAGACAAAACGGGCCAGCAAGCTGCTACAGCGACGGAAGTCAGTTTGATATTTCAATGGCCACCAATTGAAAAGATGGATAATAGTCTTGCTTGCCTTACCAATTGCGAAAAATTAAGTCTTTCAACGAATTTAATAGAAAAGGCGGCCGGATTGAACAGCCTGAAAAAGCTGCGAGTACTATCTTTAGGAAGAAACTACATAAAATCGTTCGCTGGTATgGAAGAAGTCGCGTGGGAGCCTGATTATGTGGATGCGCTGGCACTGTGGGCTCTGTACGGTGATCACGTGGTCAAGCCAGACTTGGTGCTCGGCCCCGAGACGATACAAGCCCGACACATCGCACTCCCTGTTGCAAGAGGATGCACAACATACAACAATGTACAACCCAAGAATGAAGCTGCACCAGACATTGATAATGTTTCTCCTACTCACTTCAACCTTGAAAATGCTGTTGACAATATGCCCAAGACAGAAACATCACAGAACTCTGAGGATATTATTACTAACCTTGAAGACACCACTGTTAGTACTAAAGCAACACAAGAACCTGGATTTATTTCTACAACCCACAAAAGTACTCCAGATGTCATTGCTAGTAATATACCAAAGAAAGGAACAATGCAGAATCTCAAGGATATATCTATCAGACCTGATGACACCAGTGTTAGTTATACATTGAAACAGGGAGTAACACAGGACCTTTTATTAGTTTCTACTAGTCACAAAAGTATTCCAGATATTGCTGATAGTAATATACCAAATAACGAAGCAAGACAAAACTTTCGGGATATTTCTACTAGTCTTGAAGACCCCAGTGGTAGTAAAACGTCTGAAGAGGAAGCAACCCAGCACCCTGAAAGCATTTTTACCAGTCTTGAAGATGCCAGTATTAGAAATTGGCCTGAAAATGATGCAACACAGGAACCTGGGTTCATTTGTACCGCCCATGCTAGTTTCCCAGATGTTAATGCCAATAATGTGACAGAGACAGAAGCGTTGCCAAACTCTTGGGATATTTCCGCCAGTCTTGAAGATGCCAGTGTTAGTAATACACTTAAAGCAGTAGAAGAAGGAGAGCCTGGGGATATTTTTAACACTCAAACTGACTTTCAAGAATCTGGTGCTAGAAATGAACCTAGTCTTCACAAAAATGTACAACCATCACTAAAACCCTGCTATGTTAATTTAGAACGCATAACATACAAGAAAGCATTTATATGCCAGATATGCCAAAAAGTTTACCGCTACAAACAAAACCTTAGGATTCACATCCTCAGTCATACCAAGGAAGAAATGAAAACTATCAAAATTGCaaacaaaattaccaaaaaagttaaatataaatataactgtCACATTTGTGGCAAGGGTCTGCCATGGGAACAGCGGTTAATTCAACACATGAAGAAGCACACAGAAGATCCTTTTAGCGAGCAAGTGCGTTTAAAAACACCAAAAGATAATGTTACAAAGACTAATTATACATGTGACATTTGCGGAGTATCAATAGTGAGGAAACAAAATTTGATAAAGCATATGAAGAAGCATGCTAAAGAGAAGCCTTTTGTGTGTGAAGTCTGCGAGAAACAGTTCAGTGTTCCATGGGAGCTAATGGATCACATCAAACTTGCATCTTGTAAGCCATTAAAGGCAGCATTGATGGTTGATCCTCTTACTAACAAGATATTACAGGATCTAGTGCTAAAATCCTGCTATGTCAGTATAGAACGTATTAAGACTGAAAATGTAGAAGCAACTGCGAAAATGACTGATACTGATGAAGATGTTTGTAATGGGAGCGAAGATGTTGTGTATGCGGATCAGCAGTTACAGAGCTCAGTGCGGGCACAGGTTCGCCATCGCCCAAAGAATATTTCATGCGATAGCTGTAGCAAGAAGTTCAGAAGTCATGGAGAAATGGTTGCACATGCTCGTTCTCACACAGGAGAGAAACTTTTTACATGTGATATCTGCAAGAAGCAGTATTACTACAAGCAAACCTTACAAACGCATATTCAAACAATCCATTTTGGTGAGAATTGTCATTCATGCAAAATTTGCAAGGAACAATTTCGTAGTGCTTTCTCACTACGGAAACATGTCCGGAGTCAGACAGGGGAGAAAGAGAAGAAGCCTTATGTATGCAAAGTCTGCAAGAAGACGTTTAGAAATGAGAGGGAGTGCGTCGATCATGCTCGAGTGCACACTGGTGAAAAGCCGTTTTGTTGTACTGTTTGTAACAAGGGATTTAGGCTGGAAGTTGCCCTCCGAATCCACAATCGGATCCACATAGGCGATAAGCCATATTCCTGTGATGAGTGTGTTGGTGATACTCTGGAGGAACTGTGGGTATCCTACAACATGATCGAGAAGTTGAAAGGTATCAATGTGCTGAGAAACCTAAAGGTCCTCTACATGAGTAACAACCTGGTCAAAGACTGGAGCGAGTTCAACAAATTGCAGGAACTTCCACACTTGGAGGACTTGCTGTTTGTCGGCAACCCGTTGTATGACGCGTGCGAGCTCGAAGCGTGGCGCGCGGAGGCGGCACGGCGGCTTCCGAACCTGAAGAAACTTGACGGAGAGACAGTCTTGAGAGAGGATGAGCCCCCTCTTACAGTTGCTAGTATGCAGCCGGATGGTGGTGATGCTGTTGAAACGCTTGTGAGCGCTGAAACTAACGATTGA
Protein Sequence
MAAKATTIKEAIKRWEDKTGQQAATATEVSLIFQWPPIEKMDNSLACLTNCEKLSLSTNLIEKAAGLNSLKKLRVLSLGRNYIKSFAGMEEVAWEPDYVDALALWALYGDHVVKPDLVLGPETIQARHIALPVARGCTTYNNVQPKNEAAPDIDNVSPTHFNLENAVDNMPKTETSQNSEDIITNLEDTTVSTKATQEPGFISTTHKSTPDVIASNIPKKGTMQNLKDISIRPDDTSVSYTLKQGVTQDLLLVSTSHKSIPDIADSNIPNNEARQNFRDISTSLEDPSGSKTSEEEATQHPESIFTSLEDASIRNWPENDATQEPGFICTAHASFPDVNANNVTETEALPNSWDISASLEDASVSNTLKAVEEGEPGDIFNTQTDFQESGARNEPSLHKNVQPSLKPCYVNLERITYKKAFICQICQKVYRYKQNLRIHILSHTKEEMKTIKIANKITKKVKYKYNCHICGKGLPWEQRLIQHMKKHTEDPFSEQVRLKTPKDNVTKTNYTCDICGVSIVRKQNLIKHMKKHAKEKPFVCEVCEKQFSVPWELMDHIKLASCKPLKAALMVDPLTNKILQDLVLKSCYVSIERIKTENVEATAKMTDTDEDVCNGSEDVVYADQQLQSSVRAQVRHRPKNISCDSCSKKFRSHGEMVAHARSHTGEKLFTCDICKKQYYYKQTLQTHIQTIHFGENCHSCKICKEQFRSAFSLRKHVRSQTGEKEKKPYVCKVCKKTFRNERECVDHARVHTGEKPFCCTVCNKGFRLEVALRIHNRIHIGDKPYSCDECVGDTLEELWVSYNMIEKLKGINVLRNLKVLYMSNNLVKDWSEFNKLQELPHLEDLLFVGNPLYDACELEAWRAEAARRLPNLKKLDGETVLREDEPPLTVASMQPDGGDAVETLVSAETND

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-