Cros000672.1
Basic Information
- Insect
- Choristoneura rosaceana
- Gene Symbol
- -
- Assembly
- GCA_037349165.1
- Location
- JAZBNJ010000003.1:2806412-2819191[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.00062 0.05 15.0 2.6 1 23 26 48 26 48 0.98 2 11 0.015 1.2 10.6 1.4 3 23 57 78 55 78 0.92 3 11 9.5e-06 0.00076 20.7 0.3 1 23 86 109 86 109 0.97 4 11 0.00044 0.035 15.5 0.2 2 23 116 137 116 137 0.98 5 11 0.0011 0.086 14.3 2.6 1 23 143 167 143 167 0.93 6 11 3.2e-05 0.0026 19.1 0.6 1 23 173 195 173 195 0.98 7 11 0.0025 0.2 13.1 0.5 2 23 203 225 202 225 0.96 8 11 0.0072 0.57 11.7 0.4 1 23 232 255 232 255 0.96 9 11 0.0076 0.61 11.6 1.3 2 20 262 280 261 284 0.93 10 11 0.73 59 5.4 5.5 1 23 600 622 600 622 0.94 11 11 0.0013 0.11 14.0 1.2 1 23 778 800 778 800 0.98
Sequence Information
- Coding Sequence
- atgtacaataaagagttacaatacaatacaattaaccGCGCTATTTCCCGGCGCTGTGACCCAGGGGACAAGCCGTACCGCTGCGTGTACTGCGCGTACGCATGCCGCGACTCGTCCACGCTGCGCAAGCACCAGGCGCGGCACACCGGCACCGAGACGATATTCGGCTGCAAGCTGTGTGACGTCACTTGCAAAAGCAAGTCCGCACTGAAGTTGCACGTGGCGGAGAAGCATTTGGAGGTCGACGTGAGGAAGTACGAGTGTGGTGTCTGTAAGAAACGGTTCAAAGCCAAAGCCAACCTGAGGACCCACATTcaagTCGTCCACGACAGATCCCGTACGGCCAAATGCGAAGTTTGCGGGTTGCTCCTGACCAATAGAGGCAATCTCTCTAGTCACATGAGGATACATGTCGAAGACAAGCCGTATCTCTGCAACGTGGAGCTGTGCGAGAGGCGATTTAAACATACTAGCTCCCTCCGAAAGCATTTGCTATCGCACTACCCGGATAAACAGTTCGCCTGTGAAATATGCCGCAAACGGTTCATAAAGAAGGGCGACATCGAGAGGCATCTGAGAACGCACAAACCTAAAGTTAAGAGGGTCCAGTGCGATTATTGCGGTGTCCGGTTTCTAAGTAAGacttatttaaccaatcacataaTCAAAAAGCACAGTGAAACTAAGCAGAAATATATCTGTGATATTTGTGATTTTATCACCACCAATAAGCCAGGTCTCATCATGCATATTAAACACCGACATAAGAGGATGTTTtTGACAAAATGCAAAATGTGTGACAAGAGATTTCTGCGGGCAACCTACCTGCAGAGACACTATTGGAAAATACACGAGTATGAATACAAAATACCCAAAAGGCAGAAAAAGAAACCGAAGACTAAAATAAAGGAAGAGCCTCTAGAATTTGATGATGTTAACCAATACACTGATTTGGTGCCGAAAGCTGAACCAGTGGACGcTGAAGAAGTATTATCAAAATTAGCAGCAGAGAACCAAATCGAGGAGGTGCCCGAAGAAGTGTTCAAAGAGCTGATCGACCCTCTGAAGGAGAAGCCAGAGCCGGTTTTGAGACATACACTAGACCACCGGCGCCCTGAATCGCATAAATACACGAGAGACGAGGATATAGAGGCGCAAGTCAAAAGGAGTGTCAAAGAGCTGCTGGAGAGAACGAGAAAGAAGAAGGCAGCGCTAGCCCTGGAGCGAACGAGACGGAAATACAATAGACTCATGAAGAAAGCTCTCCAGAATAGTGCGATTACAGAACGGCGTAAAATTCAATATTACAACAAGCAAATTGATAATAAGAATACATTAACAAAAACTGAAGACCGAACTGCAAAGAATGATAATAAAACAAGTttcaacaaacaaaataatgaaTTATTGGTAGAACACTTTTCAATAGATGATATCGATAAAACAAATGAAGTTCCAAATGATACAAATAAAGAAAGAACAGATGACACAGAATATAGACCAACTCTGAATAAAAACATGTTAATAGGAGATATTCCAACTAATCAAGATCCTGAAGTAAATATAGATGATGAAATCATATGCGAGAATAGAGATAATACAAGTTTCAGAAAAGCACATGATTTAGTAGTTGAAGAGCTACCTGTTAATTTAGACTCAATTGATGGTACAGATAATACGGTTAATAACAACGCAAATGAAGTCATAACCGGTGCTGAGCGAATAAACAATGAAACTGAAGAAAACGATAAAGTTGAAACAGCGAAAGGAAGGAATAAGAAATTGAAACTAAATATACACCAGTGCTATGTTTGCTTCAagcTGTTTGAGTCTAAGGAAAACCTACTGGACCATTGCAAATCCCATTTCGACGTGAGCAATATAAAAACATGGAAAAAATGTCCGCTATGCAAATACACCACAGACTTAAGTGTAACCAAGCATCTGAAAACCGTACACGACATAGAAATAAAACTGCCATACGGAACATTCAAGGACGATAATAACGATATACTAAAATCCAAATATTACTACGATGTCGGtgatgaaataataaataaagtagagATAATACCAAGTCTGAAAAATCTGAACAGGCTTGAATATACAAAAATAGATAAAGCTAATAGAAAAAAGAAGGATAAAGGTATAACTAGAAATAAGCTGGTTAAAAAGGGTAAAGAATGGATCGTGGTTAAAgagaaagttaaaataaaagattgtttaATTCCAAAATTAGATGAAACTGTTAATTTAAATGTAACTGGTGGTTATATAGAACATATGAAAGAACTGTATCGCGTTGCCAAGAAAAAAGGTGTTAAAATGCTATTTCCCTGCGATTCCTGTGACAAAGTTTGTCAAACTCTCAGTGCTTTGAAACTTCATGGTAGAAAACACGAAGTTAATCCTAAACCTTTTAGACCTAAAGTTTGGAAACATAAGGTTAATGTCAAAAAGAATAAACCTAATGAGGCTAAAcctaaaaaatctaataaagtTAAAGTAAAAACTATTATAAACAAGAATGTAGAACTGCCAAAGCTAGATAGAAGAACGAAACAAGCCCAAAATGAATTGTATAAAGAAGCCAATAGACAATCTAAGCCACAGCCTATAGTAAATAAACATAGATGTAATCGGGAACTTAGAGAATTTTACGAAAGCAACATAAGAGGCGGTGATATAGAATTTTGGCAATTCCttaaaatttacaataaaatgagTAGAGAGAACATTAACGATTTTTCTGATTTGGAAAGTACTACAACATTTGGGTACCATACTGAAGTACCTGTTAATAGCAATACAGAAGTAGAAAaagatacaaataaaaatgacgctAGAAGCACAGTCAGTGTAAGAAATAGAAATACGAGAGTGCTAGCATTTAAAAAGGCAAGATTAAGTAAGAAAGAATTTGAGCAGAAGAGGAATGAAATTAAGAAGAAATTGAGAGAGGAAATAAGACGCAGAGCTGGAAGAGAAGATTAG
- Protein Sequence
- MYNKELQYNTINRAISRRCDPGDKPYRCVYCAYACRDSSTLRKHQARHTGTETIFGCKLCDVTCKSKSALKLHVAEKHLEVDVRKYECGVCKKRFKAKANLRTHIQVVHDRSRTAKCEVCGLLLTNRGNLSSHMRIHVEDKPYLCNVELCERRFKHTSSLRKHLLSHYPDKQFACEICRKRFIKKGDIERHLRTHKPKVKRVQCDYCGVRFLSKTYLTNHIIKKHSETKQKYICDICDFITTNKPGLIMHIKHRHKRMFLTKCKMCDKRFLRATYLQRHYWKIHEYEYKIPKRQKKKPKTKIKEEPLEFDDVNQYTDLVPKAEPVDAEEVLSKLAAENQIEEVPEEVFKELIDPLKEKPEPVLRHTLDHRRPESHKYTRDEDIEAQVKRSVKELLERTRKKKAALALERTRRKYNRLMKKALQNSAITERRKIQYYNKQIDNKNTLTKTEDRTAKNDNKTSFNKQNNELLVEHFSIDDIDKTNEVPNDTNKERTDDTEYRPTLNKNMLIGDIPTNQDPEVNIDDEIICENRDNTSFRKAHDLVVEELPVNLDSIDGTDNTVNNNANEVITGAERINNETEENDKVETAKGRNKKLKLNIHQCYVCFKLFESKENLLDHCKSHFDVSNIKTWKKCPLCKYTTDLSVTKHLKTVHDIEIKLPYGTFKDDNNDILKSKYYYDVGDEIINKVEIIPSLKNLNRLEYTKIDKANRKKKDKGITRNKLVKKGKEWIVVKEKVKIKDCLIPKLDETVNLNVTGGYIEHMKELYRVAKKKGVKMLFPCDSCDKVCQTLSALKLHGRKHEVNPKPFRPKVWKHKVNVKKNKPNEAKPKKSNKVKVKTIINKNVELPKLDRRTKQAQNELYKEANRQSKPQPIVNKHRCNRELREFYESNIRGGDIEFWQFLKIYNKMSRENINDFSDLESTTTFGYHTEVPVNSNTEVEKDTNKNDARSTVSVRNRNTRVLAFKKARLSKKEFEQKRNEIKKKLREEIRRRAGRED
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -