Cros003833.2
Basic Information
- Insect
- Choristoneura rosaceana
- Gene Symbol
- -
- Assembly
- GCA_037349165.1
- Location
- JAZBNJ010000007.1:1155416-1162904[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.042 3.3 9.3 0.2 2 23 208 229 207 229 0.96 2 12 0.00012 0.0095 17.3 4.1 1 23 235 258 235 258 0.96 3 12 1.7 1.3e+02 4.2 1.3 1 23 274 296 274 296 0.95 4 12 6.2e-06 0.0005 21.3 1.9 1 23 1015 1037 1015 1037 0.99 5 12 0.0049 0.39 12.2 0.6 3 23 1044 1065 1043 1065 0.97 6 12 0.00089 0.072 14.5 0.4 1 23 1073 1095 1073 1095 0.96 7 12 0.00051 0.041 15.3 2.4 2 23 1099 1120 1098 1120 0.97 8 12 0.17 14 7.3 0.4 3 23 1134 1155 1132 1155 0.95 9 12 0.00092 0.074 14.5 3.9 1 23 1161 1183 1161 1183 0.98 10 12 0.00062 0.05 15.0 2.6 2 23 1190 1211 1190 1211 0.97 11 12 6.1e-05 0.0049 18.2 2.4 1 23 1217 1240 1217 1240 0.96 12 12 0.74 59 5.3 4.3 2 23 1245 1267 1244 1267 0.94
Sequence Information
- Coding Sequence
- ATGGACTTTGAGGAGACTTCTGACCAGCTAAACGCTGATTTAGGTGCGCATAGCCTATTTTCAAGTCCAGTGCTAGTCTCCAGGAGTGAAAGTGATGTAATGTGGTCCGGATATAAGGAGGAATTGACCACGAAAAGAGCTGTGGAACTTCTAATCGCAGGGACTCTCAAGAGTAAAGTATGCCGATATTGCTTAAATATCGTCTCCTCCTTATCGGAGTTGGATCAAATACTGCAAGTAGCTGGCACAGGAGCGCTATACAAAGTTACTATACGGGATATGGTCGCAAGTTTTTACCCTTTTAAGGTAGAGTCCGATCCAAATTTCCCGAACAAAATATGCAACAAGTGTCTGAACCGCACTATAAGCGCTTACCTCTTCACTCAACAGTGCGAACGGTCTGAACGGGCTCTCAGAAACTGTTTCGATGATATGTATGATAAATTAGACAAGCTGGACCCCTTGGAACGCCCTAAAAAACGGGGAAGACAGAAACTGAACCCTAATTATAACACCATTTACGCAGAACACAATCGTGTCATAGATTACGCTGAgccaataataaatattgtcaaTACAAAGTCTGTGTCTTTAAGCAAAGAACCAGCCATGTCGGATTTAGAGTGCCCGAAATGTTGGCAGTTGTTTACGAAGATCGAAGACTTAATGCTGCATGAAAAAAGTCATCCAAGTAGCATGTGGTTCAATTGCCGTTTGTGTGGCAAGTCTTTTGTGAAGCGTATTCACCTCAAAAGGCATTTAAAACAAACCCACATGAAGCCAGATACGTTACCGATACAATCCCACGATGCTGACAAATTTGAATGTAAAATTTGTGATTCAGTGAGTGACGATTACAGCACACATTTGCAGCATATGGAAAAGCATAAATTTCAGACGGCTCTAGAACTTTTAGTTGAAAAAGATATGGATAAACTTTGTACCATTTGCTTGGACAAGGATCAGAAATTGGTGGATTTGGATAAAATGATCCGTCTGCATGGTGGATATCCTGGAGCCACCGGTGATAAGACGTTGTACAGCATTTTGGGATCTACACTGCCTGATCATAAATCATACAAGTATCAGGAACTGCATGTTGCTCATCAtgcaaaaataatgaaatttgctAAATTGACTCAAGACAAAGTGTTAAATAAACTTAATCATTCAAAAGAGAAGAAAATTGAAGAAAATGTGAATCAAATCATCATTTCAAATCCACTAATAATTTCAAATGATAAAATTGATGTTGATGAGATGtatttgttctttttttctgATGCAAGCTTCTATAAAAAACGAGAAGCTAAAGAAATCGTACCAGTTTTGGCATCTCTGAATTATAAAGATGAGGAGTTGAATGAACTTGACTTGAAAGAGAATAAAGACATGGATGAGGAATCTAAAAAGGCACAAAATGTTAATTCTAATGTTTCACCAAATACCTGCATTATTAATACTAGACAAGATATcaatgaaaaagaaaatgaaGTAAATGGTACTGATCTATTTAATACAAAAGTACAAAGTGTAGATGACAAAAATAACGCTGTTTACTCCATACCAGAAGATGTAATAGAAAAATTTAATTCTAAACAGCCTGAAACTGAAGGAACAAAAATGGCAAAGAATACAGAAATATGTAAAACTTGTTGGATATTTAATAAACCAACTTGTAATATATGCATCAATAAACTTGTGGTCACAGACATCAATGAAATCGCTGATAATACTGAAAATCAAATACAGGAAGAAAATAATCCGAGAATAAGTCAAAACATTGCCAATGatgattgtaaatattgttgGTTATTCAAAAGTTGTGCTAAATGTGATTATtgcaaaaaaattgtcaaaGATAAAACTATTACCAATTCTGCAAGATCTGAATATGTTGATCAACAAAGCTATAATGCTAAAGAACCAGTTGATTCTAATACAGAAGCCCTAAGGAAAAGAAAATTGAAGAATTATGAAACAGATCCTAAATTGAAGAAGTGGGATTGTGACATATGTCTGATTACTAATGTGGTGGGCAGACAGACATGCATATGTTGTGGGTCTAATAAATGTGATCAAAATGAAACTGTCAAAGTTAATTGGAATTTCAAGAATCCTTTTAATTTAACACCTGATAATGATGCACATCAACATAAAGTAGTTGCTCCATGTGAAGAAATGGATGTTGAAAGTGAAACTAACTTGCAACACACAGAAGAAAGTTTGGAAACTAAAAACGAATGCTATAATTTAAACATCACCAATGAACCTGAAAATGCAGTTTTTACGGAAAATACCACAAGAACTGTGGAAAAAATGGATGTAGCAAATGCAGAAGACTGGGAAAATATATATGTTGCCCCAAATCCATATTCATTGAATGGTGTTCCAAATAATATGAACTCCCCACACAGTTACATTGGGACAAAAATATGCGAAAAGTGCCTTAACAATGCTATAACAGCGTACGTGTTTATAAATCATTCGATCTATACAAGAGATAGACTGAACATCTGCATTACCTCTATGCTAGACAGCCTTAATAAAATAGACGAACCAGAAGgtaatatatttattgaaatagCTAAAGAATCTATTTTGCCTATAAAAGAAGAGAATTACTTTGATGAGAATCTTCTACTAGACGAAGATGATGTTGACGAGGACAAACTGAAAATTGATGTGCTGGAAGATGAATTCAGAAAACCTGATAGTGAAGAGGAAGATACAAACTCAGAACCggaaataaagaattatatcAATACATTCCTCAAAGAAGAAATTGATAGCAAAAGCTTCGTGCAGAATAGTGATGACATCGACATATTTGACGAGTTTAGTCCAAAGAGAGAGTACTTTTCAGAAATAGAAAATCCGGCTAAATTAGTTACTAAAACTTACTCTAATAGGCGATTAGTGAATGGGTATCAAGTCAAATGTCCCTCAGATAACGAAGGCTATAATTCACTAGATGACGTCAGCGAATTTTTGACgttcaaaaagaaaaagaaacctACGAAACAATACTATAAATACAAGTACCGATGTCCTCTGTGCAACAAAGCTTTTGTCACCGATTTCCACTTGCAGAGGCACATTCTAAAACATTTAAACAGAAAAGTTGATTGTAAAATGTGTAATGCAGCATTTAAATCGAAATTCTTCCTCTATGAACACATCAAAATGGTTCACATATTGGATAAGATTCTATACTTTGCTTGCAAGGTGTGCGGTCGGAGCTTCGATAGTGAAGAAAAAGTGAAATCACATGAAAACTCTCACGTAAATATTCAGTGTCAACTCTGCGATAAAATATTTGTCACACAAAAACATTTCGACAGCCATCTACAAAGGCACGCTGTCAAAATGAACCGAACCAAACACAGTAACCAAATCTGCAGTTTCTGCGAAAAAGATTACACGAATGACAACAAACTGTCTATTCACGTGAACAAAGTGCATTTGCAGATAAAACCTTATTCCTGTGACATGTGTGAAAGACAATTCTACACAGAACACAATTTGAGCAAGCATAAGAAAATACACGATATGAAAACGAAAGAGAGTTGCGAGTTGTGTAAAAAGAAATTTAGCACGCGGAAAAGTATGGTCATTCATCTTAGGAAGCATACCGGGGAGACTCCTCATCGTTGCCCGTTGTGTGGCAAAGCATTTTATTCGGAATCAAAGGCTAAAAGGCACATGAAGAACTATCATGGAGGTACTTTGTACTGCAAGCTGTGTAAATGTGTGTTTTCGTGTAAGAACGATTTGAAAACTCATGTCATTATGGTACATAATCACAATGCGTTGTTATag
- Protein Sequence
- MDFEETSDQLNADLGAHSLFSSPVLVSRSESDVMWSGYKEELTTKRAVELLIAGTLKSKVCRYCLNIVSSLSELDQILQVAGTGALYKVTIRDMVASFYPFKVESDPNFPNKICNKCLNRTISAYLFTQQCERSERALRNCFDDMYDKLDKLDPLERPKKRGRQKLNPNYNTIYAEHNRVIDYAEPIINIVNTKSVSLSKEPAMSDLECPKCWQLFTKIEDLMLHEKSHPSSMWFNCRLCGKSFVKRIHLKRHLKQTHMKPDTLPIQSHDADKFECKICDSVSDDYSTHLQHMEKHKFQTALELLVEKDMDKLCTICLDKDQKLVDLDKMIRLHGGYPGATGDKTLYSILGSTLPDHKSYKYQELHVAHHAKIMKFAKLTQDKVLNKLNHSKEKKIEENVNQIIISNPLIISNDKIDVDEMYLFFFSDASFYKKREAKEIVPVLASLNYKDEELNELDLKENKDMDEESKKAQNVNSNVSPNTCIINTRQDINEKENEVNGTDLFNTKVQSVDDKNNAVYSIPEDVIEKFNSKQPETEGTKMAKNTEICKTCWIFNKPTCNICINKLVVTDINEIADNTENQIQEENNPRISQNIANDDCKYCWLFKSCAKCDYCKKIVKDKTITNSARSEYVDQQSYNAKEPVDSNTEALRKRKLKNYETDPKLKKWDCDICLITNVVGRQTCICCGSNKCDQNETVKVNWNFKNPFNLTPDNDAHQHKVVAPCEEMDVESETNLQHTEESLETKNECYNLNITNEPENAVFTENTTRTVEKMDVANAEDWENIYVAPNPYSLNGVPNNMNSPHSYIGTKICEKCLNNAITAYVFINHSIYTRDRLNICITSMLDSLNKIDEPEGNIFIEIAKESILPIKEENYFDENLLLDEDDVDEDKLKIDVLEDEFRKPDSEEEDTNSEPEIKNYINTFLKEEIDSKSFVQNSDDIDIFDEFSPKREYFSEIENPAKLVTKTYSNRRLVNGYQVKCPSDNEGYNSLDDVSEFLTFKKKKKPTKQYYKYKYRCPLCNKAFVTDFHLQRHILKHLNRKVDCKMCNAAFKSKFFLYEHIKMVHILDKILYFACKVCGRSFDSEEKVKSHENSHVNIQCQLCDKIFVTQKHFDSHLQRHAVKMNRTKHSNQICSFCEKDYTNDNKLSIHVNKVHLQIKPYSCDMCERQFYTEHNLSKHKKIHDMKTKESCELCKKKFSTRKSMVIHLRKHTGETPHRCPLCGKAFYSESKAKRHMKNYHGGTLYCKLCKCVFSCKNDLKTHVIMVHNHNALL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -