Cros030386.1
Basic Information
- Insect
- Choristoneura rosaceana
- Gene Symbol
- ZBTB8B
- Assembly
- GCA_037349165.1
- Location
- JAZBNJ010000050.1:1029472-1055868[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 0.0021 0.17 13.4 4.9 1 23 668 690 668 690 0.99 2 20 1.2 93 4.7 4.4 1 23 723 746 723 746 0.98 3 20 0.044 3.5 9.2 7.0 1 23 753 775 753 776 0.96 4 20 5e-06 0.0004 21.6 0.3 2 23 782 803 782 803 0.97 5 20 6.9e-05 0.0055 18.0 3.7 1 23 809 831 809 831 0.97 6 20 0.0012 0.097 14.1 0.6 1 20 837 856 837 858 0.95 7 20 0.00073 0.058 14.8 0.2 1 23 870 893 870 893 0.95 8 20 2.6 2.1e+02 3.6 0.1 1 23 899 922 899 922 0.88 9 20 0.73 59 5.4 0.3 1 13 931 943 931 945 0.86 10 20 3 2.4e+02 3.4 0.1 2 23 951 973 951 973 0.89 11 20 0.73 59 5.4 0.3 1 13 982 994 982 996 0.86 12 20 3.3 2.7e+02 3.3 0.1 2 23 1002 1024 1002 1024 0.89 13 20 0.73 59 5.4 0.3 1 13 1033 1045 1033 1047 0.86 14 20 3 2.4e+02 3.4 0.1 2 23 1053 1075 1053 1075 0.89 15 20 0.73 59 5.4 0.3 1 13 1084 1096 1084 1098 0.86 16 20 3 2.4e+02 3.4 0.1 2 23 1104 1126 1104 1126 0.89 17 20 0.73 59 5.4 0.3 1 13 1135 1147 1135 1149 0.86 18 20 3 2.4e+02 3.4 0.1 2 23 1155 1177 1155 1177 0.89 19 20 8.9e-05 0.0072 17.7 0.6 1 23 1186 1208 1186 1208 0.97 20 20 0.0023 0.18 13.2 0.3 1 23 1214 1237 1214 1237 0.91
Sequence Information
- Coding Sequence
- ATGGAAACAATTAGTTCTAAGGACGAAGATGAGTACAAACCAGACCTGGAACCGATTAATACTATCTGCCGGTGTTGTTTAACTACGGAAAAGCGGATGCTTAATATAACGCCTTTCGCTCCGTTATTCTTAGATTTAGCTGGTATAAAGGTGTCGGAGTCCGATGGCCTCCCCCCCTGGCTGTGCTACGAGTGCGCCAGCCTGCTGCGCAGGGCGCTCTGGTTCAAGCACAAGCTGCTGAAAGCCAACAGAATGCTCTCCGAGTATCTCATGAGATGTGCCCCGGTAGCGTGCCATGAGTTTGCCAATGAACCCGGTGTAGTGCTTCGTACAGCGGACGTCGCGGGCACCGATACCGCCGGAGACACGGGCTCAGCACGATTCGCAGGAAGCGGCGAGCCCATGGACGCAGACGGCGGGCTTACGGTCGGCTGGGGGCGCGCGGTCGGTGGGTTGCTCACGGGCGGCGGCGCTCCGACAGCCGGGGGGAAGCGCGCGGGCGGTGGAGGGCTCGCGGGCGGTGGGTGGCCCGGGGAGCTCGCTGGCGGCGGGGGCCGCTCTGGCGGCGCGGGGCCCGCGGGCGACGGGGGCCGCTCTGGCGGCGCGGGGCCCGCGGGCGACGGGggccgcgtgggcggcgcggggctcGCGGGCGACAGAggccgcgtgggcggcgcggggctggCGGGCGACGGGGACCGCAGCACTGGCGATCGGGGCACGATGAGGTGGCTTTGCGCAGGCGAAtttcCAATAGATGCTCTGGATCCTGAACTGGGGAAGTATGCGGCACCAAATCTCAAGGAAACCAATGTCCTTGTGTTTGACAACACCAGCAAGAGCAAGTTGGGATATCAGAAAGTTTTAGAGCATGAGAAAAAACCAATAGTATCTGCTCTGGATGAAGTTGGTATAGACATAGCCATAGTCAACAAGACGGAGAGCGAGATGGAATCTGTCAAGATGGAATTTGACTCTTTCTCGGATTACGAAGACAACATCACGTTGGAGGAGTTCCGATATCTTCTTAAGGAAATCGTCCTTCTGCGAGCAGATGTAACTGCCATCCAGAAGAGGTTGGAGACGTCGGAACGTGAGAATGCCGATTTACGAGGAGAGTTGACCTCATTGCGCGACGCATCGGCCGAGGCGGCTCGGGCATGGTCGCATCAGCGAAACGTGACACCGCGTCGCCGCGGCCGAGCTATTGCGCAAAATGTTCACTCGTCGAACGGCACGAAGGCAACTCATTGCAATCAGTCGCAGGTTAATGAACCCGTATCTGCTATGGCGCGCATTGTCAACTTGCCGCCCCACCCTGTGTCGCCTGCGCCGGCTCCCGATGCTCCCAATTCATCTCGGGTGCAAAAAGGGACCTACGCTCAGGCatctcgccgcccgccgcgccgctcgcgcCCCCTGAACTCTGTAAAGGGAACGCAAGAGCAGCCTGCGGCCGCCGATCGACCAGCGCCGAAAGTTATTGCGCGCGATGATGGCTTCACTCCAGTAGTGAATCGGAAACGCCGTTTAAAGCGCAATCGCAATCAGCGTGGGACCGTTCCTGCAGCGTCGTCCTGTATCCAAGCTGCAGTGCCGATGGTGAACATCTACCTGTCTCGGTTGGACGAGAAGACGACGCCTGACAAGGTGTTCGAGCACGTCCACGCGGCAGTAAAGGCCCGaTCAAATGTACCAAAACTATCAAATGCAGAAATTAGTACGATCCTAGATGTAGCAGACAACATTGTGAAACTAGAAAACGAAGAGAAAACTgccaagaaaaagaaaagagcTAAAAAGAAAGAGGACAAAAACAAAGATGACAAAGTCAAAGTTAGGAAAAAGCGAAAAAGTAAAGAAACAACGGAGGATACGGAAGAACCAAAAACAACTATTAGGAAACCAGTGGAATTGGACCCCACGAAGATTAGGATAGTGATGCTGAACCCCGAAGAACAGTTCAAGCAAAGCGAGGAAGAAAGTAAATCAAAATATCCCTTCCAATGCCATCTGTGCTTCAAGGGATTTAATTTCGACACCAAATTAGAAAACCATATGAGGAAACATAGTCCGTCCCGCGGTCCGTTCACGTGCAAGCTGTGTTCCATGTATTTCCCGACGGCGTACAGCCACAGTGTGCACGCGCACATCCACTCGCGCCGCTACGAGTGCTGCGTCTGCCAGCGACGTATGACAGACCGGGCCTCTATACTGCACCACTACAGAACCCAGCACGAAGGCATGGTGTCACACTTCACGTGTCACATATGCGGTAAAGTGTCGACCAACAGTAAAACGCACCGCGGTCATATGCGGAACCATCACGGCGGGCAGCGCCCCGAGTGCGAGCAGTGCGGCAAGACTTTCGTCAACAAGGACTCTCTCGAGGAGCACAGACAGATCCACCAGGGTATAAAGAACTACGCTTGCTCTGTGTGCGGCAAACGATTCCGTACACGCACACAGATAAAACATCACCAATTGAAACACACCGATGTCAAGGAGTATTACTGCGTCGAGTGTGACGTCAGATTTAAGTCGGCACACAGTTTGCGGCAGCATTTGGTTAAGAGTTTGAAACACAAGGACAAGCAGAGTCTCAAGTTCCCGTGCAACCGTTGCGAGAAGCGGTTCGACAACGCCCGCGCTCTCACCCAGCACGCGCTCGTGCAACACGAAGGACTCCGGCCGCACGCCTGCCCCGCCTGCCCCGCCGCGCTCGCCTCGCGCACCTCGCTCGCCAAGCACGCCGCGCACGTGCACGGCGGACACCGCCCGCCGCCCCGCCACGTGTGCGACGCCTGCGGGAAGACCTTCCGGGtaccacacacacactcacactcacCACGCTGCCCCGCCTGCCCCGCCGCGCTCGCCTCGCGCACCTCGCTCGCCAAGCACGCCGCGCACGTGCACGGCGGACACCGCCCGCCGCCCCGCCACGTGTGCGACGCCTGCGGGAAGACCTTCCGGGtaccacacacacactcacactcacCACGCTGCCCCGCCTGCCCCGCCGCGCTCGCCTCGCGCACCTCGCTCTCCAAGCACGCCGCGCACGTGCACGGCGGACACCGCCCGCCGCCCCGCCACGTGTGCGACGCCTGCGGGAAGACCTTCCGGGtaccacacacacactcacactcacCACGCTGCCCCGCCTGCCCCGCCGCGCTCGCCTCGCGCACCTCGCTCGCCAAGCACGCCGCGCACGTGCACGGCGGACACCGCCCGCCGCCCCGCCACGTGTGCGACGCCTGCGGGAAGACCTTCCGGGtaccacacacacactcacactcacCACGCTGCCCCGCCTGCCCCGCCGCGCTCGCCTCGCGCACCTCGCTCGCCAAGCACGCCGCGCACGTGCACGGCGGACACCGCCCGCCGCCCCGCCACGTGTGCGACGCCTGCGGGAAGACCTTCCGGGtaccacacacacactcacactcacCACGCTGCCCCGCCTGCCCCGCCGCGCTCGCCTCGCGCACCTCGCTCGCCAAGCACGCCGCGCACGTGCACGGCGGACACCGCCCGCCGCCCCGCCACGTGTGCGACGCCTGCGGGAAGACCTTCCGGGGCAAGTCTGTGCTGGTAAACCACGTGCGCACTCACACGGGCGAGAAGCCATTCGCGTGCGCGACTTGCGGCCGCAAGTTCTCGCAACGCACCGCCATGCGCACGCACGTCGACCTCGTGCACCTCAAGCGGAGACGCGGGAAGCCAAAACCCGAGCCTACTCCAGAGGTACCTGCCGAGCCTCCCAAAGTGGATTTGTTTGCTAAAGAAGAGCCCCAATTAGTGTTCGACTCgtggcacagacagacaaacatgcaGAATTGTGAGGTCTACTTCACAGTCACTGCTGGGCCTTAG
- Protein Sequence
- METISSKDEDEYKPDLEPINTICRCCLTTEKRMLNITPFAPLFLDLAGIKVSESDGLPPWLCYECASLLRRALWFKHKLLKANRMLSEYLMRCAPVACHEFANEPGVVLRTADVAGTDTAGDTGSARFAGSGEPMDADGGLTVGWGRAVGGLLTGGGAPTAGGKRAGGGGLAGGGWPGELAGGGGRSGGAGPAGDGGRSGGAGPAGDGGRVGGAGLAGDRGRVGGAGLAGDGDRSTGDRGTMRWLCAGEFPIDALDPELGKYAAPNLKETNVLVFDNTSKSKLGYQKVLEHEKKPIVSALDEVGIDIAIVNKTESEMESVKMEFDSFSDYEDNITLEEFRYLLKEIVLLRADVTAIQKRLETSERENADLRGELTSLRDASAEAARAWSHQRNVTPRRRGRAIAQNVHSSNGTKATHCNQSQVNEPVSAMARIVNLPPHPVSPAPAPDAPNSSRVQKGTYAQASRRPPRRSRPLNSVKGTQEQPAAADRPAPKVIARDDGFTPVVNRKRRLKRNRNQRGTVPAASSCIQAAVPMVNIYLSRLDEKTTPDKVFEHVHAAVKARSNVPKLSNAEISTILDVADNIVKLENEEKTAKKKKRAKKKEDKNKDDKVKVRKKRKSKETTEDTEEPKTTIRKPVELDPTKIRIVMLNPEEQFKQSEEESKSKYPFQCHLCFKGFNFDTKLENHMRKHSPSRGPFTCKLCSMYFPTAYSHSVHAHIHSRRYECCVCQRRMTDRASILHHYRTQHEGMVSHFTCHICGKVSTNSKTHRGHMRNHHGGQRPECEQCGKTFVNKDSLEEHRQIHQGIKNYACSVCGKRFRTRTQIKHHQLKHTDVKEYYCVECDVRFKSAHSLRQHLVKSLKHKDKQSLKFPCNRCEKRFDNARALTQHALVQHEGLRPHACPACPAALASRTSLAKHAAHVHGGHRPPPRHVCDACGKTFRVPHTHSHSPRCPACPAALASRTSLAKHAAHVHGGHRPPPRHVCDACGKTFRVPHTHSHSPRCPACPAALASRTSLSKHAAHVHGGHRPPPRHVCDACGKTFRVPHTHSHSPRCPACPAALASRTSLAKHAAHVHGGHRPPPRHVCDACGKTFRVPHTHSHSPRCPACPAALASRTSLAKHAAHVHGGHRPPPRHVCDACGKTFRVPHTHSHSPRCPACPAALASRTSLAKHAAHVHGGHRPPPRHVCDACGKTFRGKSVLVNHVRTHTGEKPFACATCGRKFSQRTAMRTHVDLVHLKRRRGKPKPEPTPEVPAEPPKVDLFAKEEPQLVFDSWHRQTNMQNCEVYFTVTAGP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -