Cros000159.1
Basic Information
- Insect
- Choristoneura rosaceana
- Gene Symbol
- -
- Assembly
- GCA_037349165.1
- Location
- JAZBNJ010000002.1:929300-941874[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.013 1 10.9 0.9 1 23 304 326 304 326 0.96 2 12 0.00036 0.029 15.8 0.8 2 23 334 355 333 355 0.94 3 12 0.088 7.1 8.2 0.8 1 23 359 381 359 381 0.97 4 12 0.0005 0.04 15.3 0.9 1 23 386 409 386 409 0.98 5 12 0.013 1 10.9 0.1 1 23 413 436 413 436 0.94 6 12 0.072 5.8 8.5 0.1 3 21 455 473 454 478 0.91 7 12 0.054 4.4 8.9 0.5 3 23 488 509 488 509 0.94 8 12 0.33 26 6.5 0.3 3 23 529 550 528 550 0.97 9 12 1.2e-05 0.00096 20.4 0.5 1 23 561 583 561 583 0.98 10 12 6.5e-05 0.0052 18.1 3.2 1 23 589 611 589 611 0.99 11 12 0.014 1.1 10.8 2.5 1 23 617 639 617 639 0.98 12 12 6e-05 0.0048 18.2 0.2 1 23 645 668 645 668 0.98
Sequence Information
- Coding Sequence
- ATGGAGGACGTGAGAGTGTGTCGCATATGCCTTGTTGTGGGTGTAAAAATGCACAACTTGCATTCATATCCATTGAATGGTTACTTCGAAGCCCTTATTGGAATTAATCCTCTAAGCATGATGGAGCTACCTCCATATGGGTGTTACGAATGCACAGCACTGGTGGTGAAGTTGTACCGGTTTCGGGAACGCTGCCTCGTTGGACAAGCTGAGCTGTGTTCTTTACTGCAAGCTACGGGAAAAATTACGATTGAATCCTTAAATAAAGTCAACCGTGAACAGTTAAAACTAACTTCCAACTTGACCATAAAACATAACAACAATATATATGATCTGAATGACAATGACATGTTTGAAGTAAAATTAGAAGCACCAAAAGCAAATGTATCTGACAATAATTATCTCATGGAAGttgattttataaaacaagAAGATTATAGTTATGATGATGGAGAAGCAAATTGTGATGACTTTCCGTTAGCTTCGGTATCTAGTGATGATGAGCCACTAGCGCTGTGTAAAAGTGAGAAGGAAAAGAAGAAATCTGATAAGAGGCGGGAGAAGAAAAGTAAGAAGATAAAAGATGCTACTGTGGAAGAAGCCAGCTTGGATAATAGTGATGATTTACAAGGCATCGAGGCACTAACCAACACAGCAGCTGTAACCGAAAGAGAAGAACTGGAAATAACTCCAAAACGGAAACGCGGACGGCCGCGACAGACAAAAACTAAAGACACTGCGAAAGGGACAGACATCAAACAAAAAACCAGACGCACAAAGAATACGGGAGGTGTTGGAGTCGAAGATATTGACTTGGAGGAATACGTCACTATTGTAAAATTGACGCCAGCAGAGCAGATAGAAGAAATAAACAAGCGCCAGCAGTCCTCAAACTACTTGAATGCGCCGTTCCAGTGTAACCTGTGCTATAAAGGTTTTATAGACACGGTTGCGTGGAAGCATCATGTGGGGAAACATGACGTGAGCGCAGGCGACGTCGAGTGTTCCATTTGCAAATTCCGGTTCCGGTCGAAACGCGCCCTTCAAAAACACGCCGCCAACCATGAGAAGAAATACGCCTGCAAGTCGTGCCCTTACATCTCTAAAACAACCACACAAGCCAAACAGCATCAAAGGTGGCATAAGGGTGTAACATACAAGTGCCAATATTGCGACGAAGTCTCCACtaaatgGACGTCATACCTAAGCCACGTTAGGATCAAGCATCCTTCAGAGTTCATTTGCGGCGTCTGCGGGTACTCCTATGTCAGCAAATTGGGGCTGGCCATGCACAAGACAATGATGCATAAAGATCTTGTTGAGAAGACCGAGCCGGACGGCGAGCAGGAACCGGGCCCGTACTGCGCGGAGTGCGACGTGCAGTTCGTCTCTGCAGAGGCGTGGAAGCGGCACCTGGTCACCTCCGCCAAGCACGCGCCAGTCAACGACTACAAGCACGGGTGCCGCGCTTGCGGCAGCATATTCGCGAGTGCTGAGGAACTCCGCTTACACCACCGCTCCGAGCACGCGCGTCACCGTCCCAAGAACTACGGGAAGAAGCGGGAGGGCGCCTGGCCCGCTGCATGCGAACACTGTAACGAGGACATACCGAACGCGCGCGAGTACTGGACACACTTCCGTCGCGTCCACCCCGACAAGACATATCCTATACAGAAGAACTACATCTGCGATATATGCGGGAAGAGTTTCCGGGGTAACGCATTCCTGGTGTACCATAAGAGGACCCACTTCGAGGAACGCGCGTACAAATGCCTCCAGTGCCCCAAGGCGTTCCATAATCGAACCAATCTGCAGATGCACGAGAAAACGCATTCCGACGTTCGTCCGTATCCGTGCAGCGTTTGTTTTAAAGCGTTCAAGTGCAAAGGTGCGCTTGATCGACACTTTAGGAGTCATACAGGCGTCAAACCGTACGAGTGTGAAGTTTGTGGCAAGGCGTTTGGTCAGTCCAACAGCAGGAAGCTTCACGTCAGAACTGTGCATTTAAAACAGCCTGCGCCTTACGTCAGTCGGGCTAGGAAACGCCGtccgctggactag
- Protein Sequence
- MEDVRVCRICLVVGVKMHNLHSYPLNGYFEALIGINPLSMMELPPYGCYECTALVVKLYRFRERCLVGQAELCSLLQATGKITIESLNKVNREQLKLTSNLTIKHNNNIYDLNDNDMFEVKLEAPKANVSDNNYLMEVDFIKQEDYSYDDGEANCDDFPLASVSSDDEPLALCKSEKEKKKSDKRREKKSKKIKDATVEEASLDNSDDLQGIEALTNTAAVTEREELEITPKRKRGRPRQTKTKDTAKGTDIKQKTRRTKNTGGVGVEDIDLEEYVTIVKLTPAEQIEEINKRQQSSNYLNAPFQCNLCYKGFIDTVAWKHHVGKHDVSAGDVECSICKFRFRSKRALQKHAANHEKKYACKSCPYISKTTTQAKQHQRWHKGVTYKCQYCDEVSTKWTSYLSHVRIKHPSEFICGVCGYSYVSKLGLAMHKTMMHKDLVEKTEPDGEQEPGPYCAECDVQFVSAEAWKRHLVTSAKHAPVNDYKHGCRACGSIFASAEELRLHHRSEHARHRPKNYGKKREGAWPAACEHCNEDIPNAREYWTHFRRVHPDKTYPIQKNYICDICGKSFRGNAFLVYHKRTHFEERAYKCLQCPKAFHNRTNLQMHEKTHSDVRPYPCSVCFKAFKCKGALDRHFRSHTGVKPYECEVCGKAFGQSNSRKLHVRTVHLKQPAPYVSRARKRRPLD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00021592;
- 90% Identity
- -
- 80% Identity
- -