Basic Information

Insect: Choristoneura rosaceana
Gene Symbol: -
Assembly: GCA_037349165.1
Location: JAZBNJ010000050.1:617087-642044[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 7e-05 0.0056 18.0 2.6 1 23 429 451 429 451 0.96

2 11 0.39 31 6.2 3.9 1 23 457 479 457 479 0.97

3 11 0.02 1.6 10.3 2.0 1 23 483 505 483 505 0.96

4 11 0.00069 0.055 14.9 1.7 1 23 510 533 510 533 0.98

5 11 2 1.6e+02 4.0 0.1 3 11 540 548 539 561 0.81

6 11 0.00019 0.015 16.6 0.1 1 21 571 591 571 592 0.95

7 11 0.054 4.3 8.9 4.4 1 23 629 652 629 652 0.95

8 11 9.5e-05 0.0076 17.6 0.5 2 23 677 698 676 698 0.95

9 11 7e-07 5.6e-05 24.3 0.3 1 23 704 726 704 726 0.99

10 11 4.6e-06 0.00037 21.7 0.6 1 23 732 755 732 755 0.96

11 11 0.016 1.3 10.6 0.2 2 23 762 783 761 783 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	7e-05	0.0056	18.0	2.6	1	23	429	451	429	451	0.96
2	11	0.39	31	6.2	3.9	1	23	457	479	457	479	0.97
3	11	0.02	1.6	10.3	2.0	1	23	483	505	483	505	0.96
4	11	0.00069	0.055	14.9	1.7	1	23	510	533	510	533	0.98
5	11	2	1.6e+02	4.0	0.1	3	11	540	548	539	561	0.81
6	11	0.00019	0.015	16.6	0.1	1	21	571	591	571	592	0.95
7	11	0.054	4.3	8.9	4.4	1	23	629	652	629	652	0.95
8	11	9.5e-05	0.0076	17.6	0.5	2	23	677	698	676	698	0.95
9	11	7e-07	5.6e-05	24.3	0.3	1	23	704	726	704	726	0.99
10	11	4.6e-06	0.00037	21.7	0.6	1	23	732	755	732	755	0.96
11	11	0.016	1.3	10.6	0.2	2	23	762	783	761	783	0.97

Sequence Information

Coding Sequence: ATGACTGTGTACTGCGCTGTCCCGGGATGCAGCTCGAATTCAAGAACAACCAACTACACGTTTCACCGGTTGCCGCGTAATGTGATAGGGCGCGCGCGTTGGATCCTGGCCCTGGGGTGCCGCGCCGGCACGCTGCACAGGCGCGCGCTGGTCTGCCGGCGACATTTTGAACAGAGCATGTTCCGCAGCGGAGGACGGGGCCGGGAACTGATCATGAACGCGGTGCCGACTCTGTTCATGCCTTCTaaCCGCTCTATACAACCGGTGCTGAGTTCAGAGGAACCAGACATTGAGGAGACGTTTGATAGCGAACCCGAAAATCATTCTGGGGACGAGtTGTCAAAGGATAGTCATCCACAAGGCGCCAAGATTTCTAGCGAAGCGGTTACGAAAGAGGAATTAGTTGCTTGTCGCGCGTGCCTCGCGGCGGACGGCCGGTTGTATCCCATAAGCGGCAGCGGGTTGGAAGACGTCCTCGCGGCGCTCACTGGGGTTGAGATGCCCGAAGCAGAGGGCTTCCCTCGCCACCTGTGCGTGTTCTGCATGGCGCGGCTGTCAAAGTGCGCCGCCTTCCGTGACAGCTGTCGCCGGAGTACAGAGCTGCTAAGGACCCTGGTGGAAGAAGAGTTGTTaacaatgaaaaatattaaaatggtAGATCGTCAAACGCACAAATTAACGAACGGACTTACGCTGGCGGGCTTATACCATTTCCAAACTCACCCGGTTTTGGATATAATACCACCTCTTagtgaaaatcaaaataaacataaaGAAGATAAAGAGAATAAAGAAGAAGTGTCAGAATACACAGAAGTAGAATATCTGGACATTGATGATGGTGCAGAATATTTAGATACAAATGATTCAAAAGCAGCAATAGATAAAGTTGATGATAAAAAGGTTGAATCGGTAAATAAAAATTCTGATTTAAATTCAGATGATGTCGACGACGTAGAGTATGAACCGGAAAATGATATCAGCGATGTTGACACTGATACATTAGAAAAGGCACTCGTTGCAATTGAAAGAGAAAGAAAATCAGTTAAACCAGATAAAGATATAGCTAGATATcgagaagtaaataaaaatgcaaaaaccAAAGTGTATAAATACCCCAGTGACGTAGATATTGATACGTCTGAGGAAACTACTGAAATAAGAAGAATTGATAAAAAGGCTTTAGCTGCTTTTAGTAAAAATTTTAACTTTACTGTTAAGGTATTAAATAAAGAACAACAGAGACAGAAGGTAGAAGAGAGGAAAAGGAACAGCAGGTCGGCCTTCTGCTGTGACCTCTGCGGGAAGGGGTTCAGGAGGAAAAGCGCTGTAATGAAACATTTGAGCTATCATGATCCGAGCCTGCCGCACGAGTGCGACGCGTGCCGGCTGCGATTCCGCTCGCGGCTGAAGATGCTCAAGCACCGCCGGTCCCATCGCGCCGTGTACACGTGCAACGAGTGCGGCTACACCACCCGATTCAGAACGTACGCCAAGAACCATAGCCTCATGCACAAAGGCACGACGTACTCTTGCCCGTACTGCTATATGGTATACAACTACCAGACCTCGTACTACAACCACATTAGGATGCAGCATCCCGGACAGTACGAGGCGTGTGACGAGTGCGGGGAGACGTTCGCCGCGGGACGGGGGATAACTCTGCACAAGTCGCTCGTGCATGGGACGAACGATAAACCAAATGGAGAGTTTAAATGTAAGGACTGTGATGTCAAGTTTTCGAGCGGCGAAGCGTTACAAAGGCACTTGGAAGTGAGCGCGGGCGTGCCGCATGCGGCGCTGTGGCCGTGTGCCGCATGCGGCGACACCTGCGGCAGCGAGGAAGCGCTCAAACAACATGCGGCAGAGGAACACACAGACCGGCATCATTGCGATGAGTGCAACAAAACGTTTTTAAACTCGGAGTCGTTCGAGCTGCATGTGCAACGGAAGCACATGAACAAGCGCGCGGTGCTCGCCCCGTTTCGACCGCGCGtcgggggcggcggcggccgcaGCCAGCCCTGCGTGTGCGAGATATGCGGGAAAGTGCTCAGGAACTCGACGCTGCTCCAGTACCACATCAACGGGCACTTGCCTATCAAACCGTTCCGGTGCACGCAGTGTCCTAAAACATTCCCGCGTCAAGCCGCCTTAGACTCGCATATGCGGGTGCACACAGGCGAGCGGCCGTTTCAGTGTGAGCAATGCCCGCAGGCCTTCGCGTCACCAAGCAACCTCAGTAGACACACCAAATATAGACACATGACGAGAGAGCTTGTGAAGTGCAAAATATGCGATAAACAGTTGCGTGCCGTCTCCCTCTCACTGCATGTGCGCACGGTGCATCAGAACGTGAAGTACGTGCGGAAACGGGACCGGAAGAGGAAGACATTGTTGTCCGAAATAATTAAGagttaa
Protein Sequence: MTVYCAVPGCSSNSRTTNYTFHRLPRNVIGRARWILALGCRAGTLHRRALVCRRHFEQSMFRSGGRGRELIMNAVPTLFMPSNRSIQPVLSSEEPDIEETFDSEPENHSGDELSKDSHPQGAKISSEAVTKEELVACRACLAADGRLYPISGSGLEDVLAALTGVEMPEAEGFPRHLCVFCMARLSKCAAFRDSCRRSTELLRTLVEEELLTMKNIKMVDRQTHKLTNGLTLAGLYHFQTHPVLDIIPPLSENQNKHKEDKENKEEVSEYTEVEYLDIDDGAEYLDTNDSKAAIDKVDDKKVESVNKNSDLNSDDVDDVEYEPENDISDVDTDTLEKALVAIERERKSVKPDKDIARYREVNKNAKTKVYKYPSDVDIDTSEETTEIRRIDKKALAAFSKNFNFTVKVLNKEQQRQKVEERKRNSRSAFCCDLCGKGFRRKSAVMKHLSYHDPSLPHECDACRLRFRSRLKMLKHRRSHRAVYTCNECGYTTRFRTYAKNHSLMHKGTTYSCPYCYMVYNYQTSYYNHIRMQHPGQYEACDECGETFAAGRGITLHKSLVHGTNDKPNGEFKCKDCDVKFSSGEALQRHLEVSAGVPHAALWPCAACGDTCGSEEALKQHAAEEHTDRHHCDECNKTFLNSESFELHVQRKHMNKRAVLAPFRPRVGGGGGRSQPCVCEICGKVLRNSTLLQYHINGHLPIKPFRCTQCPKTFPRQAALDSHMRVHTGERPFQCEQCPQAFASPSNLSRHTKYRHMTRELVKCKICDKQLRAVSLSLHVRTVHQNVKYVRKRDRKRKTLLSEIIKS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00325466;
90% Identity: iTF_00325466;
80% Identity: iTF_00325466;