Cros029707.1
Basic Information
- Insect
- Choristoneura rosaceana
- Gene Symbol
- -
- Assembly
- GCA_037349165.1
- Location
- JAZBNJ010000047.1:669131-673435[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 6.9e-05 0.0055 18.0 0.6 1 20 151 170 151 173 0.93 2 10 0.00032 0.025 15.9 3.3 1 23 178 200 178 200 0.98 3 10 6.4e-05 0.0051 18.1 3.7 1 23 206 228 206 228 0.99 4 10 0.0003 0.024 16.0 0.4 1 23 234 256 234 256 0.98 5 10 1.7e-05 0.0014 19.9 0.7 2 23 267 288 266 288 0.97 6 10 4.8e-05 0.0038 18.5 5.0 1 23 294 316 294 316 0.98 7 10 1.1e-05 0.00084 20.6 3.1 1 23 322 344 322 344 0.98 8 10 0.0091 0.73 11.3 5.7 1 23 350 372 350 372 0.97 9 10 4.7e-06 0.00038 21.7 3.0 2 23 379 400 378 400 0.97 10 10 0.0064 0.52 11.8 3.9 1 23 406 429 406 429 0.95
Sequence Information
- Coding Sequence
- ATGGCAACCGAAATATATATTAAGCCCGAGCCGTGCCCAGAATCACCTGATGCAAACGCCGGAATCGAGCATAGTTCCAATGAAGCCGAATCTAGAATGGAAACTGAGTTCGTAAACATAAAAATAGAACCAACTATCACAGTCAGCGTAAAGCAAGAGCCTCCAGACTATCTAGATTGTCCTGTCGACCTCGAACCCCCGAAGTATGGAGAGAACGAACAGATGAACACACCGAATCCTACCGAACTGAATGTACCAGTCTCTGGACCAGCGGAAAATATTACAATCAAAGTGGAGCCTGCGGATCCTGACGATATAACCTATGGCAGCCAACAACCGGTGCTGCCCGTCCAGATCGCGTCTCGCCCGAAGTCGCCGCAGACCATACTGCCGGACTTGTCCGACACAGACTTCGCCCTGGCTGCCCAATCAACCAACGTCAATGGCTCTTTCCACTGTCCGATATGCAACAAGAAATTCGTGAACCGCGGCAACGTGCTCCGTCACTTGCCCATACACAACAGAGAAGTATTCAAATGCGAATTTTGTACAAAAGAATACACCAACAAGGCTTTCTATGAAAAACACATGTACATGCACAGTTTGGAGAAGAAATATCAATGCGAGAAATGTATGAAGAGATTTAGAACGACTTCCAATCTGGAACAGCATAAAAAGTCGCATTTGGAGGTGAAACCTTTCGTTTGTGATATCTGCGAACGCCCTTTCTCTATAAGAGGCAATATGCTTAAACATAAGCAGCGGCATAATTGTAAAAAACCCAATTCTGATCCTATAACGTGTAATGTATGCAATAAGGTGTTCGAAAAGGAGTATTTGCTTAAAAGTCATTTACAACGGCATACTACGGAGAAACCTTTTCATTGTGATATATGTTTGtacaattttaaacataaaagtaCTTTGATAAGACACATGCAAGTACATTTAGGTCAAACGCCTTTCGTGTGTAACATTTGTTTCAAAAGTTTCACACATAAAGCGTTGCTGAAGCCTCACATGCGCAAACACACTGGGGAAAAACCTTTCGAGTGCCGAATGTGTAAGAAATTATTCGCACACAAACATAATATGCTACGTCACGAGCTGAGACATAGTAAAGTGAAGAATCTAGTATGTCATATATGTAGTAAGAAATTCCCTAGAGAAAGTAGACTCAAGTATCACATGAGAACGCATACAAAGGAGAAGTTGTTTTCCTGCGATGTGTGTTTTAGGGATTTTTCGCATAAGCAAAATGTTCTGAGGCATTATGATAGAAAGCACCCCAATGTTGCTTATGGTGTGACCAAGAGAGAGATAGTTGTTGAAGAAGTGGAGTGA
- Protein Sequence
- MATEIYIKPEPCPESPDANAGIEHSSNEAESRMETEFVNIKIEPTITVSVKQEPPDYLDCPVDLEPPKYGENEQMNTPNPTELNVPVSGPAENITIKVEPADPDDITYGSQQPVLPVQIASRPKSPQTILPDLSDTDFALAAQSTNVNGSFHCPICNKKFVNRGNVLRHLPIHNREVFKCEFCTKEYTNKAFYEKHMYMHSLEKKYQCEKCMKRFRTTSNLEQHKKSHLEVKPFVCDICERPFSIRGNMLKHKQRHNCKKPNSDPITCNVCNKVFEKEYLLKSHLQRHTTEKPFHCDICLYNFKHKSTLIRHMQVHLGQTPFVCNICFKSFTHKALLKPHMRKHTGEKPFECRMCKKLFAHKHNMLRHELRHSKVKNLVCHICSKKFPRESRLKYHMRTHTKEKLFSCDVCFRDFSHKQNVLRHYDRKHPNVAYGVTKREIVVEEVE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00156511; iTF_00155557;
- 90% Identity
- -
- 80% Identity
- -