Basic Information

Insect: Choristoneura rosaceana
Gene Symbol: -
Assembly: GCA_037349165.1
Location: JAZBNJ010000068.1:419939-424007[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 0.052 4.1 9.0 2.4 2 22 152 172 151 176 0.92

2 16 0.079 6.3 8.4 0.1 1 21 196 216 196 217 0.96

3 16 0.56 45 5.7 0.2 2 16 255 269 254 271 0.85

4 16 0.0056 0.45 12.0 2.3 1 22 281 302 281 302 0.95

5 16 1.9e-05 0.0015 19.8 4.0 1 23 309 331 309 331 0.98

6 16 0.0015 0.12 13.8 4.1 1 23 336 358 336 358 0.98

7 16 0.00066 0.053 14.9 5.6 1 23 364 386 364 386 0.96

8 16 0.039 3.1 9.4 2.7 1 23 392 414 392 414 0.97

9 16 9.5e-06 0.00076 20.7 1.1 1 23 420 442 420 442 0.98

10 16 0.00021 0.017 16.5 3.7 1 23 448 470 448 470 0.98

11 16 0.091 7.3 8.2 4.6 1 23 476 498 476 498 0.98

12 16 0.017 1.4 10.5 0.6 1 23 504 526 504 526 0.98

13 16 0.0002 0.016 16.6 4.3 1 23 535 557 535 557 0.98

14 16 4.5e-05 0.0036 18.6 1.7 1 23 563 585 563 585 0.98

15 16 0.018 1.4 10.4 0.7 1 14 591 604 591 611 0.84

16 16 0.00062 0.05 15.0 0.1 1 23 641 663 641 663 0.93

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	0.052	4.1	9.0	2.4	2	22	152	172	151	176	0.92
2	16	0.079	6.3	8.4	0.1	1	21	196	216	196	217	0.96
3	16	0.56	45	5.7	0.2	2	16	255	269	254	271	0.85
4	16	0.0056	0.45	12.0	2.3	1	22	281	302	281	302	0.95
5	16	1.9e-05	0.0015	19.8	4.0	1	23	309	331	309	331	0.98
6	16	0.0015	0.12	13.8	4.1	1	23	336	358	336	358	0.98
7	16	0.00066	0.053	14.9	5.6	1	23	364	386	364	386	0.96
8	16	0.039	3.1	9.4	2.7	1	23	392	414	392	414	0.97
9	16	9.5e-06	0.00076	20.7	1.1	1	23	420	442	420	442	0.98
10	16	0.00021	0.017	16.5	3.7	1	23	448	470	448	470	0.98
11	16	0.091	7.3	8.2	4.6	1	23	476	498	476	498	0.98
12	16	0.017	1.4	10.5	0.6	1	23	504	526	504	526	0.98
13	16	0.0002	0.016	16.6	4.3	1	23	535	557	535	557	0.98
14	16	4.5e-05	0.0036	18.6	1.7	1	23	563	585	563	585	0.98
15	16	0.018	1.4	10.4	0.7	1	14	591	604	591	611	0.84
16	16	0.00062	0.05	15.0	0.1	1	23	641	663	641	663	0.93

Sequence Information

Coding Sequence: ATGGAGCCCGAGGTCAAGCAggagccgcgcgccgccgccgcggcgcCGCTAGTTGCGAGAGCGGAGTTGGCTACGGTGAAGCAGGAGTGCAGTGATGACGCCTACGCCGATGCCGCGTCGTCGCCAGTTGACAGAGCAGAGCCGACCACGGTGAAGCAGGAGTGCAGTGACGCTGAGGCGGACGGCTCGGACGAGTCCTGCGCCAGCAGCGAGTGTTCGGGAGAGTACCTCAAGGAGGAGCCTGCAGATGCTGCCGGCTGCGACGCAGAGCTTCTCATGAGTATGGTCAGGCCTTGTACCGTCCGCCTCTCGCGCGCCCTGGCGCAGGAGTACGGGGCCAGCACGCCGCGCGCCGCACCGCGCCGCGGCTCGCGCCATGACGCCCAGGAACCTGGCGCCGCCACTCGAACGACTCCAATGCGCCAGAAAGTTCACGCGCAGGAACAAATGCTGTCTTGTGACAGGTGCAGCGCACAgtacacacaaaaaaataaactaattagaCATCTGAGAAGTTGCGAAAGTCATATTTGGCAAGCATCTAAAAAATCCGTGCTCGGTAGAAATACCagaaaagaaaactctttcTCTTGCAACCAGTGCACAGAACAGTTTCTGTCTAAAGCCGACTTAGCTGTACACAGACGAGCGTGCCCCCGAGGGACGGGCCCTCCACCTAACAGGTGCGGCGCTTGCGCGGGACAAGCACGACTAGCACGAGGCAAGCTCATCCACATTCCTTGCGCAGAGAAAAAAACCCTCTCTTGTGACACTTGCGGGAAGAAATAcgctgaaaaatattacttcgcTGCTGATATAAAACCAGCAAAGGAGCGACTTTATGAATGCGATGTTTGTTCACAACAGTTTTCTCGAAAATGTTATTTGGCCCTGCACAAGAAGACAAACACAACATGCAGCTCTTACTGCTGCGATACTTGTAGCAAAACATACAGAAAGAAGTCACAGTTAATTATCCACATTCGCAGTCACACGGGGGAGCCTTACCACTGCGACGTTTGTCGGAAGCGGTTCTCTATTTTGTCGCAATTTACTTCTCATAAACGCATCCACACGGCGGCAAAACCCCACTGCTGCGATGTCTGTCAGAAACAGTTCACGAATTTGAGGGGCTTAACTCGTCATAAACGCATCCACACGGGGGAGCGACTTCACAGCTGCGATGTCTGTCAGAAGCAGTTTCTGGTATTATCTCTTCTCACTTATCACAAACGGACCCACACGGGGGAGACACCCTACAGCTGCGATGTCTGTCAGAGACAGTTTCCGTACTCTTCAAGCTTGATGCGTCATAAACGCGTCCACACGGGGGAGCAACCTTACAGCTGCGACGTCTGTCAGAAGCGGTTTACGCATGTTACGAGCTTAAATTATCACAAACGGGTACACAATGGAACGCGTACTTATTCCTGTGAAGTCTGTAAGAAAGGATTCTTAGTAATGTGCCACTTAAATCGTCATAAACGCATCCACACCGGGGAGCGACCGTACAGCTGCGATGTCTGTCAGATGCGGTTCTTGGAAAAAGGTACTTTAATTAGACACAAGGAAACGCACAAGAGTAACGCGGTGAAAAGAGGTTATTTCTGCGATACTTGTAACAGAAAATGCAGAGACAAGTCTAAGTTAATTCTCCACATCCGCAGTCACACAGGGGAGAAGCCTTACAGCTGTGATGTGTGCCAGAAGCGGTTTGCGGATAAATATCGTTTTACCGCTCACAAACGCGTCCACACGAGGGGGAAGCCCTATCAATGCGATGTCTGTCAGAAGCGTTTTAAGAACAGACAAGTTGTTGTAGACCACTTTAAGCTGACTTATTGCAGATTCTGTAAGCTACAATTCGGTTGCCGTGGCACTTTATATATACACAAACGGAAGGAGCACACGGGGGCGTCCTTTCTTTGTGCTGTTTGCAACAAACAGTTTGCGAGTAAGGAGCTGCTGTCGCGGCACGCGGCGGTCCACTTGTGGCTGCCGGAGGTCGCCGCGCCCGGCGCCACTTCGTAG
Protein Sequence: MEPEVKQEPRAAAAAPLVARAELATVKQECSDDAYADAASSPVDRAEPTTVKQECSDAEADGSDESCASSECSGEYLKEEPADAAGCDAELLMSMVRPCTVRLSRALAQEYGASTPRAAPRRGSRHDAQEPGAATRTTPMRQKVHAQEQMLSCDRCSAQYTQKNKLIRHLRSCESHIWQASKKSVLGRNTRKENSFSCNQCTEQFLSKADLAVHRRACPRGTGPPPNRCGACAGQARLARGKLIHIPCAEKKTLSCDTCGKKYAEKYYFAADIKPAKERLYECDVCSQQFSRKCYLALHKKTNTTCSSYCCDTCSKTYRKKSQLIIHIRSHTGEPYHCDVCRKRFSILSQFTSHKRIHTAAKPHCCDVCQKQFTNLRGLTRHKRIHTGERLHSCDVCQKQFLVLSLLTYHKRTHTGETPYSCDVCQRQFPYSSSLMRHKRVHTGEQPYSCDVCQKRFTHVTSLNYHKRVHNGTRTYSCEVCKKGFLVMCHLNRHKRIHTGERPYSCDVCQMRFLEKGTLIRHKETHKSNAVKRGYFCDTCNRKCRDKSKLILHIRSHTGEKPYSCDVCQKRFADKYRFTAHKRVHTRGKPYQCDVCQKRFKNRQVVVDHFKLTYCRFCKLQFGCRGTLYIHKRKEHTGASFLCAVCNKQFASKELLSRHAAVHLWLPEVAAPGATS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -