Cros031932.1
Basic Information
- Insect
- Choristoneura rosaceana
- Gene Symbol
- -
- Assembly
- GCA_037349165.1
- Location
- JAZBNJ010000068.1:378813-386721[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 4.4e-06 0.00035 21.8 0.6 1 23 162 184 162 184 0.98 2 13 2.1e-05 0.0016 19.7 1.8 1 23 205 227 205 227 0.98 3 13 0.00017 0.013 16.8 1.0 1 23 233 255 233 255 0.97 4 13 0.0013 0.1 14.0 4.6 1 23 261 284 261 284 0.93 5 13 1.7e-05 0.0013 20.0 2.2 1 23 293 315 293 315 0.98 6 13 0.0081 0.65 11.5 4.0 1 23 321 344 321 344 0.93 7 13 1.3e-06 0.0001 23.5 3.0 1 23 353 375 353 375 0.98 8 13 0.0081 0.65 11.5 4.0 1 23 381 404 381 404 0.93 9 13 4.4e-06 0.00035 21.8 4.2 1 23 418 440 418 440 0.98 10 13 0.083 6.7 8.3 6.6 1 23 455 478 455 478 0.93 11 13 4.4e-06 0.00035 21.8 4.2 1 23 492 514 492 514 0.98 12 13 0.0081 0.65 11.5 4.0 1 23 529 552 529 552 0.93 13 13 0.018 1.4 10.4 1.1 1 17 566 582 566 583 0.91
Sequence Information
- Coding Sequence
- ATGGAGCCCGAGGTCAAGCAggagccgcgcgccgccgccgcggcgcCGCTAGTTGCGAGAGCGGAGTTGGCTACGGTGAAGCAGGAGTGCAGTGATGACGCCTACGCCGATGCCGCGTCGTCGCCAGTTGACAGAGCAGAGATGACCACGGTGAAGCAGGAGTGCAGTGACGCTGAGGCGGACGGCTCGGACGAGTCCTGCGCCAGCAGCGAGTGTTCGGGAGAGTACCTCAAGGAGGAGCCTGCAGATGCTGCCGGCTGCGACGCAGAGCTTCTCATGAGTATGGTCAGGCCTTGTACCGTCCGCCTCTCGCGCGCCCTGGCGCAGGAGTACGGGGCCAGCACGCCGCGCGCCGCACCGCGCCGCGGCTCGCGCCATGACGCCCAGGAACCTGGCGCCGCCACTCGAACGACTCCAATGCGCCAGAAAGTTCACGCGCAGGAACAAATGCTGTCTTGTGACAGCCATATGGGGGAGAAGCCCTACAGCTGTGATGTCTGTCAGAAGCGGTTCGCGCGTTTAAGTGCACTAAATATGCACAAACGCATCCATACGGGGAAGGGACCTTACTGCTGTGATGTCTGTCAGAAGCGCCACACGGGGGAGAAGCCTTACTGCTGTGATGTCTGTCAGAAGCGGTTCGCGCGTTCAGGTGCACTAAATATGCACAAACGCATCCACACGGGGAAGGGACCTTACTGCTGTGATGTCTGTCAGAAGCGGTTCGCAAGTTTAGATGCACTAAATATCCACAAAAGCATCCACACGGGGAAGCAACCTTACTGTTGTAATGTCTGTCAGAAGCGGTTCTCTTGGAAAAGTAATTTAACTAGACACAACAAAGAAACGCACAAGACTGGCGCGATGCAAAGAGGTTTTTGCTGcgatatttgtaacaaaaagtACGGAGACAAGTATAACTTAGTTCTCCACATTCGCAGCCACACGGGGGAGAAGCCTTACAGCTGTGATGTCTGTCAGAAGCGGTTCGCGTGCAAAAGTACTTTAACTAGACACAACAAAGAAACGCACAAGACTGGCGCGATGCAAAGAGGTTTTTGCTGcgatatttgtaacaaaaagtacagagaCAAGTATAACTTAATTGTCCACATTCGCAGCCACACGGGGGAGAAGCCTTACAGCTGTGATGTCTGTCAGAAGCGGTTCGCGTGCAAAAGTACTTTAACTAGACACAACAAAGAAACGCACAAAACTGGCGCGATGCAAAGCGGTTTTGAGCCAAAGCCGTACTGCTGTGATGTCTGTCAGAAGCGGTTCTCGTCGAAAGGTAATTTAACTAGACATAAAGAAACGCACAAGACTGGGCGCGATGCAAAGAGCCACACGGGGGAGAAGCCTTACTGCTGTGATGTCTGTCAGAAGCGGTTCGCGTGCAAAAGTACTTTAACTAGACACAACAAAGAAACGCACAAGACTGGCGCGATGCAAAGCGGTTTTGAGCCAAAGCCGTACTGCTGTGATGTCTGTCAGAAGCGGTTCTCGTCGAAAGGTAATTTAACTAGACATAAAGAAACGCACAAGACTGGGCGCGATGCAAAGAGCCACACGGGGGAGAAGCCTTACAGCTGTGATGTCTGTCAGAAGCGGTTCGCGTGCAAAAGTACTTTAACTAGACACAACAAAGAAACGCACAAGACTGGCGCGATGCAAAGCGGTTTTGAGCCAAAGCCGTACTGCTGTGATGTCTGTCAGAAGCGGTTCTCGTCGAAAGGTGGACTAGAAGAGCGTGTTTTGTGA
- Protein Sequence
- MEPEVKQEPRAAAAAPLVARAELATVKQECSDDAYADAASSPVDRAEMTTVKQECSDAEADGSDESCASSECSGEYLKEEPADAAGCDAELLMSMVRPCTVRLSRALAQEYGASTPRAAPRRGSRHDAQEPGAATRTTPMRQKVHAQEQMLSCDSHMGEKPYSCDVCQKRFARLSALNMHKRIHTGKGPYCCDVCQKRHTGEKPYCCDVCQKRFARSGALNMHKRIHTGKGPYCCDVCQKRFASLDALNIHKSIHTGKQPYCCNVCQKRFSWKSNLTRHNKETHKTGAMQRGFCCDICNKKYGDKYNLVLHIRSHTGEKPYSCDVCQKRFACKSTLTRHNKETHKTGAMQRGFCCDICNKKYRDKYNLIVHIRSHTGEKPYSCDVCQKRFACKSTLTRHNKETHKTGAMQSGFEPKPYCCDVCQKRFSSKGNLTRHKETHKTGRDAKSHTGEKPYCCDVCQKRFACKSTLTRHNKETHKTGAMQSGFEPKPYCCDVCQKRFSSKGNLTRHKETHKTGRDAKSHTGEKPYSCDVCQKRFACKSTLTRHNKETHKTGAMQSGFEPKPYCCDVCQKRFSSKGGLEERVL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -