Cros031937.1
Basic Information
- Insect
- Choristoneura rosaceana
- Gene Symbol
- -
- Assembly
- GCA_037349165.1
- Location
- JAZBNJ010000068.1:411821-417215[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.05 4 9.0 2.1 2 22 153 173 152 177 0.92 2 17 0.12 9.3 7.9 0.1 1 21 197 217 197 218 0.96 3 17 0.65 52 5.5 0.2 2 16 256 270 255 272 0.85 4 17 0.00053 0.043 15.2 4.3 1 23 282 304 282 304 0.99 5 17 1.8e-05 0.0014 19.9 5.2 1 23 314 336 314 336 0.98 6 17 0.00026 0.021 16.2 0.9 1 23 342 364 342 364 0.97 7 17 0.00029 0.023 16.1 6.7 1 23 370 392 370 392 0.98 8 17 0.0016 0.13 13.7 5.5 1 23 401 423 401 423 0.98 9 17 0.00038 0.03 15.7 0.3 1 23 429 451 429 451 0.98 10 17 0.0073 0.59 11.6 2.6 1 23 457 480 457 480 0.93 11 17 0.0065 0.52 11.8 4.0 1 20 494 513 494 516 0.94 12 17 0.026 2.1 9.9 0.3 1 23 522 544 522 544 0.96 13 17 3.1e-05 0.0025 19.1 0.7 1 23 553 575 553 575 0.97 14 17 5e-05 0.004 18.5 1.9 1 23 581 603 581 603 0.98 15 17 0.011 0.9 11.1 1.0 1 20 609 628 609 631 0.92 16 17 0.17 14 7.3 5.4 1 23 637 659 637 659 0.96 17 17 0.22 17 7.0 0.1 1 16 665 680 665 682 0.86
Sequence Information
- Coding Sequence
- ATGGAGCTGTGCACGGCGCTGgagccggcggcgggcggcgcggagcCCGAGGTCAAGCAGGAGGCGCCGCCGCCGTCCGCCGTGAAGCAGGAGCGCCGCGACGACGCCGACGACGCCGCAGCGCCGCCAGTTGACAGAGCAGAGCCGACCACGGTGAAGCAGGAGTGCAGTGACGCTGAGGCGGACGGCTCGGACGAGTCCTGCGCCAGCAGCGAGTGTTCGGGAGAGTACCTCAAGGAGGAGCCTGCAGATGCTGCCGGCTGCGACGCAGAGCTTCTCATGAGTATGGTCAGGCCTTGTACCGTCCGCCTCTCGCGCGCCCTGGCGCAGGAGTACGGGGCCAGCACGCCGCGCGCCGCACCGCGCCGCGGCTCGCGCCATGACGCCCAGGAACCTGGCGCCGCCACTCGAACGACTCCAATGCGCCAGAAAGTTCACGCGCAGGAACAAATGCTGTCTTGTGACAGGTGCAGCGCACAgtacacacaaaaaaataaactaattagaCATCTGAGAAGTTGCGCAAGTCATATTTGGCAAACATCTAAAAAATCCATGCTCGGTAGAAATACCACAAAAGAAAAGTCATTCTCTTGCACCCAGTGCACAGAACAGTTTCTGTCTAAAGCCGACTTAGCTGTACACAGACGAGCGTGCCCCCGAGGGACGGGCCCTCCACCTAACAGGTGCGACGCTTGCGCGGGACAAGCACGACTAGCACGAGGCAAGCTCATCCACATTCCTTGCGCAGAGAAAAAAACTCTCTCTTGTGACACTTGCGGGAAGAAATAtgctgaaaaatattacttcgcTGCTGATATACAACCAGCAAAAGAACGACTTTATGAATGCGATATTTGTTCAAAACAGTTCTCGAAAAAATGTTATTTGGCCCTGCACAAGAAGACACACACAACAGGCAGCAGAGGCAAAACAGGTTTTTGCTGcgatatttgtaacaaaaaatgcAGAGACAAGTATAACTTAATTGTCCACATTCGCAGCCACACGGGCGAGAAGCCTTACTGCTGTGATGTTTGTCAGAAGCGGTTCGCAACTTTAGGTGCACTAAATATCCACAAAAGCATCCACACGGGGAAGCAACCTTACTGCTGTAATGTCTGTCAGAAGCGGTTCTCGTTGAAAGGTCATTTAACTAGACACAAAGAAACGCACAAGACTGGCGCGATGCAAAGAGGTTTTTGCTGcgatatttgtaacaaaaagtacagagCCAAGTGTAACTTAGTTCTCCACATTCGCAGGCACACGGGGGAGAAGCCTTACAGCTGTGATGTCTGTCAGAAGCGGTTCGCGGGTTTAGGTGTGCTAAATAAGCACAAACGCATCCACACGGGGCAGGGACCTTACTGCTGTGATGTCTGTCAGAAGCGGTTCGCGTGGAAAAGTACTTTAACTAGACACAACAAAGAAGTGCACAAGACTGGCGCGATGCAAAGCGGTTTTGAGCCAAAGCCGTACTGCTGTGATGTCTGTCAGAAGCGGTTTGTGTATAAACATAGCCTTAATGTCCACAAATGGATCCATACGGGGGAGAAACCCTACCAGTGCGATGTCTGTCAGAAACAGTTTCTTTGGCCTTCAAGTTTGATTAGGCATAAACTTATTCACACGAGGGAGAAGCCAAAGCAACTTTATAAATGCGATGTTTGTTCAAAAGAGTTCTCGCGAAATGGTTATCTGGCCGTGCACAAGACGTCACACATAATAGGCAGCTCTTACTGCTGCGATATTTGTAGCAAAACATACAGAAGTAAAACACCGTTAATTATCCACATTCGCAGCCACACGGGGGAGAAGCCTTACTGCTGTGATGTTTGTCAGAAGCGGTTCACGTCTTTAGGTGTACTAAATATACACAAACCCATCCACACGGGGAAGCGACCTTACTGCTGTGATGTCTGTCAGAAGCGGTTTGCGTATAAATTTTCCCTTTATTTTCACAAACGGATCCATACGGGGGAGAAACCCTACCAGTGCGAAGTCTGTCAGAAACAGTTTCCTTGGCCGTCAAACTTGAGTAGCATCCCACACCAAGACCCTTCCCATACTCCATGGGATCAAAGACATACCGTCTGGTCTCTTACCGTCGTCTCTAAAAATACCCGACGGCTCCAGGAGAGCCGGCACGTTAGCCGACGCAAGAGACCGACGAATAATGTCGTTGAGGGCAGCATGTCTCGCGAAGCGGCCCGCGCTCTTCTGGCAGGAGAGTCCGTGGTGTCCAAGCCGGTCTACGTCACTTCCGCAGGGGCAACGATGTGGAGCGCAGACCGGGACCCCAAGACGTAA
- Protein Sequence
- MELCTALEPAAGGAEPEVKQEAPPPSAVKQERRDDADDAAAPPVDRAEPTTVKQECSDAEADGSDESCASSECSGEYLKEEPADAAGCDAELLMSMVRPCTVRLSRALAQEYGASTPRAAPRRGSRHDAQEPGAATRTTPMRQKVHAQEQMLSCDRCSAQYTQKNKLIRHLRSCASHIWQTSKKSMLGRNTTKEKSFSCTQCTEQFLSKADLAVHRRACPRGTGPPPNRCDACAGQARLARGKLIHIPCAEKKTLSCDTCGKKYAEKYYFAADIQPAKERLYECDICSKQFSKKCYLALHKKTHTTGSRGKTGFCCDICNKKCRDKYNLIVHIRSHTGEKPYCCDVCQKRFATLGALNIHKSIHTGKQPYCCNVCQKRFSLKGHLTRHKETHKTGAMQRGFCCDICNKKYRAKCNLVLHIRRHTGEKPYSCDVCQKRFAGLGVLNKHKRIHTGQGPYCCDVCQKRFAWKSTLTRHNKEVHKTGAMQSGFEPKPYCCDVCQKRFVYKHSLNVHKWIHTGEKPYQCDVCQKQFLWPSSLIRHKLIHTREKPKQLYKCDVCSKEFSRNGYLAVHKTSHIIGSSYCCDICSKTYRSKTPLIIHIRSHTGEKPYCCDVCQKRFTSLGVLNIHKPIHTGKRPYCCDVCQKRFAYKFSLYFHKRIHTGEKPYQCEVCQKQFPWPSNLSSIPHQDPSHTPWDQRHTVWSLTVVSKNTRRLQESRHVSRRKRPTNNVVEGSMSREAARALLAGESVVSKPVYVTSAGATMWSADRDPKT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -