Cros003908.1
Basic Information
- Insect
- Choristoneura rosaceana
- Gene Symbol
- -
- Assembly
- GCA_037349165.1
- Location
- JAZBNJ010000007.1:2634579-2661348[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 6.7 5.4e+02 2.3 0.7 3 17 58 72 56 73 0.89 2 12 0.0084 0.67 11.5 0.3 1 23 435 457 435 457 0.95 3 12 2.5e-05 0.002 19.4 1.9 1 23 470 492 470 492 0.97 4 12 0.0051 0.41 12.1 9.3 1 23 498 520 498 520 0.99 5 12 1.6e-06 0.00013 23.1 4.3 1 23 527 549 527 549 0.99 6 12 2.8e-05 0.0023 19.2 0.2 1 23 555 577 555 577 0.93 7 12 2.2e-06 0.00018 22.7 0.0 1 23 583 605 583 605 0.98 8 12 1.3e-05 0.0011 20.3 1.2 1 23 611 634 611 634 0.95 9 12 9.6e-05 0.0077 17.6 1.6 1 23 640 663 640 663 0.96 10 12 3.3e-05 0.0026 19.0 0.9 2 23 670 691 669 691 0.97 11 12 2.4e-05 0.0019 19.5 1.0 1 23 697 719 697 719 0.97 12 12 0.0039 0.31 12.5 0.2 1 23 725 749 725 749 0.94
Sequence Information
- Coding Sequence
- ATGAACCGTATTGCAAATTGCTTCATTTGCAATGCCAGCACGGGAGCTCGGAACACAATCAATCTCATACAGGATACCAGTAACCTCCAGTCGGGCAAGAAACTGCTAGACATTGTGAGTGAGATCGCAGAAAAACCTTTGCGAGAGGAAGACATACATTCCACCGTTATATGCAAGAAATGTAGCCAAACTTGCAAGGAGTATGACGATCTACAAGTAAGGTTAAAGCATATCAAAACAGAGCTACACGGACAGATAAACAAGACAAATGAGAGTCCCATAAAGAATGAAGCGAAAAAAGTGGTGCTGCCGGCGTCTAAGCTCCACCCGCTGCCTCCAGACTTTGTCCTCAATGTAGGACGTCTTCCCATTAGCAGCAATGTGCTGGTGCCATTGAAGAACAAGACCACAACGACCATACCTTCCACACTAAACCTGAAAGTGACCGTTGGTTCGTCAGTCCTCACCCAAAGCATAAAGACGACGACAGCTCTAGCACAAAACATAGTTATTCAGAGCGCCGAAACAAACCAAGCGGACTCGGAAGACCTAATATTTGAGGAGTCAAGCCTCCACAAAGACTTTATGACGTCAGTTGTGCTGCAGAGGCTGACTGATGGAGAAACTCCCAATGATCAGCAGATGGAGATTGATGAAGATTGCTCGTATGCTATTGTAGCTGAGGAGGATGCAGATGGTGCAAGTGAAGATACCCAAAAGAAGTCCGACGCGAACATGTTCGATGTGAGTCTGCTATCGTCGCTAGACGACAGCCAGGACGGTGGCGGGCGCGACCAGTTCGTGCTGGGCAAGCTCGAGATACTGAGCGAGAGGGAAGACGAGGACGACGACGAGCAGACGATCGTGATGTCGGACGATAACTACTTACGCGTAGTGGGGGGCCGACGGCTCATGTACGGCGAGCGGCTCGAGCTGCTGCCCGACGGGACCGACGCGGACCAGCCCGACGCGCAAGACGACGAGGACTCGCAGATAGAATTGCAAGTTTCAGGTGACGAGGAGACCGCTAACGCTATCATAGCGGCTGCGAGAGAACAAGGCGGGGCTTTTATTAAGGTGGAGTCGGGAGAGATGTATCGGGTGAAGTCGGTGCAGAGCAAGGCCAAAGATGATGACAACGAATTTACTGACCACTTGCAGATTGTAGTAAAAGAAGACGATGGGTCTTTCAAATGCATGTTGTGCCAAAAGAACAGGAACAAAGGGTCCCGCGTGACGCGCTTCACGGGCGACGCGGAGTTCATAATGCGGCACATGCGGCTGACGCACGACGCGCGCGTCTACATCTGTCGCACGTGCGGCCTGGCGCTGCGCCGGCGCGACCACTACATCGCGCACGTCGctcaACACGCGAAAGAGAATGCCGGCCAGGATAAGAGCAAATTACACGAATGCAATATTTGCAACAAGAAATACAGttctaaaACTCTTCTAGTGGAGCACATGAATCTTCACAACGGGCAGCGTCCCTACACGTGCCACATCTGCCACAAGAGCTTCGCGTCAAAGTATACACACCAGTCCCATCTGAAGACGCATCTGGACCGTCCCCGCCCGTTCAAATGCGAAGAGTGCGGGAAGTGTTTCTTCACGCTGCAGAACCTGAATCAGCATCTCAAGACCCACTCCGGGATCAAGGAGTTTGAGTGTAGCGTTTGCGGCAAAGCGTTTGGAACGCAGCACAACTTGGAGATGCATGGCGTAGTGCATTCTGGGCAGAAGCCGTTCGTCTGTGGTGTCTGCGGGAAAGCTTTCGCGCGCCGCGCTGAGGTCAAAGACCATATGCGGATACACACTGGCGAGCGGCCGTTCGCGTGCGACGTGTGCGGCGCGACGTTCTCGCAGCGCTCCAACCTGCACTCGCACAAGCGCGCCACGCACTACGACGACAAGCGGTACAGGTGCGACCAGTGCCCCAAGCGGTTCAAGCGGCGCAGACTACTAGACTACCATATAAAGGCGTCCCACACCGGGGAGCGCCCCTTGAAATGCGAGGTCTGCCAAGCCACGTTCGTGTACCCCGAACACTACAAGAAACACATCAGGATACACAGCGGCGAGAAACCCTATGTCTGTGAGGTGTGCGGCAAGTCGTTCAACTCGCGCGACAACCGCAACACGCACCGTTTCGTGCACAGCGACAAGAAGCCGTACGAGTGCCTCGTCTGCGGCGCGGGCTACATGCGGAAACAGCTGCTCTACACGCATATGAATACCAGCGGACATCTGGCTGAGTCGATTGTGGTGAACCAGCCCCGCGTCACCATACAGAGGATAGCCAACAACGCGCCCGGAGACAACGTGTATGAATCGACAGAGGAGTTGGAATTAGAAGCAGAAGGCGAGAAGGCCGATGAAAACGAAGGCACCGTGATAATAGGAGATAAGAAATATATTCTACAGAAAGGGCTGAAGGATTCGCTGAATCTGGTTGCggataccgatgatattttaaCTTATAATTTGGAGGGAGCGTTAAAGACTGAAGGTAGCTACATTGATAACGTTACTACTGAACCACAGGAAGAGGGAGCACAGATATTAGACGAGAGCGGAGGAATAGTGCGGGTAGTGCAGATAACTTTACCCGACGGAAACAACGGATGGGTCGCCATTAACCCGTGA
- Protein Sequence
- MNRIANCFICNASTGARNTINLIQDTSNLQSGKKLLDIVSEIAEKPLREEDIHSTVICKKCSQTCKEYDDLQVRLKHIKTELHGQINKTNESPIKNEAKKVVLPASKLHPLPPDFVLNVGRLPISSNVLVPLKNKTTTTIPSTLNLKVTVGSSVLTQSIKTTTALAQNIVIQSAETNQADSEDLIFEESSLHKDFMTSVVLQRLTDGETPNDQQMEIDEDCSYAIVAEEDADGASEDTQKKSDANMFDVSLLSSLDDSQDGGGRDQFVLGKLEILSEREDEDDDEQTIVMSDDNYLRVVGGRRLMYGERLELLPDGTDADQPDAQDDEDSQIELQVSGDEETANAIIAAAREQGGAFIKVESGEMYRVKSVQSKAKDDDNEFTDHLQIVVKEDDGSFKCMLCQKNRNKGSRVTRFTGDAEFIMRHMRLTHDARVYICRTCGLALRRRDHYIAHVAQHAKENAGQDKSKLHECNICNKKYSSKTLLVEHMNLHNGQRPYTCHICHKSFASKYTHQSHLKTHLDRPRPFKCEECGKCFFTLQNLNQHLKTHSGIKEFECSVCGKAFGTQHNLEMHGVVHSGQKPFVCGVCGKAFARRAEVKDHMRIHTGERPFACDVCGATFSQRSNLHSHKRATHYDDKRYRCDQCPKRFKRRRLLDYHIKASHTGERPLKCEVCQATFVYPEHYKKHIRIHSGEKPYVCEVCGKSFNSRDNRNTHRFVHSDKKPYECLVCGAGYMRKQLLYTHMNTSGHLAESIVVNQPRVTIQRIANNAPGDNVYESTEELELEAEGEKADENEGTVIIGDKKYILQKGLKDSLNLVADTDDILTYNLEGALKTEGSYIDNVTTEPQEEGAQILDESGGIVRVVQITLPDGNNGWVAINP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00342443;
- 90% Identity
- iTF_00156494;
- 80% Identity
- -