Cros010742.1
Basic Information
- Insect
- Choristoneura rosaceana
- Gene Symbol
- -
- Assembly
- GCA_037349165.1
- Location
- JAZBNJ010000014.1:10092831-10108918[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.00082 0.066 14.6 0.2 2 23 144 165 143 165 0.93 2 14 0.0012 0.095 14.1 2.4 1 23 171 193 171 193 0.96 3 14 0.00014 0.011 17.1 0.3 1 23 284 306 284 306 0.98 4 14 0.00046 0.037 15.4 0.1 3 23 383 404 381 404 0.92 5 14 0.01 0.84 11.2 0.1 1 23 419 441 419 441 0.96 6 14 0.01 0.84 11.2 0.1 1 23 480 502 480 502 0.96 7 14 0.01 0.84 11.2 0.1 1 23 541 563 541 563 0.96 8 14 0.01 0.84 11.2 0.1 1 23 674 696 674 696 0.96 9 14 0.01 0.84 11.2 0.1 1 23 807 829 807 829 0.96 10 14 0.01 0.84 11.2 0.1 1 23 940 962 940 962 0.96 11 14 1.9e-05 0.0016 19.7 0.2 1 23 990 1012 990 1012 0.98 12 14 0.0013 0.1 14.0 0.2 1 23 1018 1040 1018 1040 0.97 13 14 0.00072 0.058 14.8 0.3 1 23 1046 1068 1046 1069 0.95 14 14 0.027 2.2 9.8 1.2 1 23 1082 1104 1082 1104 0.95
Sequence Information
- Coding Sequence
- ATGGATGGTGATGGAGATGACTTCAATCTCCACTGGGAGGAGGATGTGGAGAGCAAGcATATCCCAGGTGTGGTGGCTTCAGAAGAAGTTATTTGTGGCTTGGACACAGAACAAGCTGGATCTTTTTCAAACATGACAAATGAAGTTGTAATCCCGGACACTGATCAAATAGCTGCTGAGAACTTGATGTACTTATCACAAGATGTTGTGAGTTACACGGATGCTGCTGAATTGGCTGTTGACCCTAGTGTGGAGTGTGTCACTGAAGAGGTGATCACTGATGACTGGGTCAACCCTGGAGGACAGGAAAGAGTTGAAGTTCCATTGGATCACTTTGCGACAGCTGCACTGGATAATATAAAAGAGGAAAATGACATTGATGTCCCACTCCCTACAGATCAGGACCAATACACAGCGATGCGGCCATGGCCGTGCGACTTCTGTTCCCGTCGCTTCCGCAAGAAGGCGGCTCTGATGAACCATATGGTGGCGCATCAAAACGATCGCCCGCATGCGTGCAACTTGTGTGGAGTGCGCTACGTGCGCAAGTGCGATCTCATGAACCACCTCAAAGTGCATGCTATGGTGCCCGATAATGCTGACCCCGTGGATTATGCTGATGTGTTGGATAACAGTCAAGCGATTAAACCAAAGAAAAAGAGAGGGCGGCGAAAAAAGAACCCTGAACCAGTCGAGAATGGGCTTTGGGAGAACATGACATCGGCCCGAACGCAGCAATGGTCGCGAcgcgcgcgctcgccgccgAAGCGGCCGCCGACGCCGCCCTCGCCGGCCAGCGAGCCGGagccgccgtcgccgccgccgccgcccgccgaccCCAGCCGGCCGTTCGTGTGTCGCCACTGCGGCGTCGGCTTCGCGAGGGAGAAGGCGTTACAGTCGCACGCCAGGGTGCACGGCGGCGACTCGCCTATGGAATGCAGCGCGTGCGGCGAGCTGTGCTGGTCGCGGGAGGCGCTCTCGGCGCACGCGCGGCTGCGGCATCCCCACCAGCCGCCTCCTCCCGAGCGGGAGCCCTATGACTCCAACTCAGGCGACGACGACATGGAGTACCAGTTGTCACCGTTGGCTGACAGCGGCAGCGAGCGCGCCGTGTTCGACACGCAGCGCGGGCCCGAGCTGTTCTGCCAGGACTGCGGCGTGGCGTTCCAGCGGGCTGATCTGCTGCGTCGGCATCAGGCCGCCGCGCACAGCCACAAGCGGCACGACAGCTCGTCGAGCACGTGGGCGGAGCACACATGCGAGGTGTGCGGCGAGGCGTGCGCCGACGCGCTGCAGCTGCTCGCGCACGCAGAGCGGCACGCCGACCGCCAGGCGGCGCCCGCCAGCTGCTCGCGCACGCAGAGCGGCACGCCGACCGCCAGGCGGCGCCCGCCAGGTACTGTACACGACAGCTCGTGCGGCACGTGCCCGGAGCACACGTGCGAGGTGTGCGGCGAGGCGTGCGCCGACGCGCTGCAGCTGCTCGCGCACGCAGAGCGGCACGCCGACCGCCAGGCGGCGCCCGCCAGCTGCTCGCGCACGCAGAGCGGCACGCCGACCGCCAGGCGGCGCCCGCCAGGTACTGTACACGACAGCTCGTGCGGCACGTGCCCGGAGCACACGTGCGAGGTGTGCGGCGAGGCGTGCGCCGACGCGCTGCAGCTGCTCGCGCACGCAGAGCGGCACGCCGACCGCCAGGCGGCGCCCGCCAGGTACTGTACACGACAGCTCGTGCGGCACGTGCCCGGAGCACACGTGCGAGGTGTGCGGCGAGGCGTGCGCCGACGCGCTGCAGCTGCTCGCGCACGCAGAGCGGCACGCCGACCGCCAGGCGGCGCCCGCCAGGTACTGTACACGACAGCTCGTGCGGCACGTGCCCGGAGCACACGTGCGAGGTGTGCGGCGAGGCGTGCGCCGACGCGCTGCAGCTGCTCGCGCACGCAGAGCGGCACGCCGACCGCCAGGCGGCGCCCGCCAGGTACTGTACACGACAGCTCGTGCGGCACGTGCCCGGAGCACACGTGCGAGGTGTGCGGCGAGGCGTGCGCCGACGCGCTGCAGCTGCTCGCGCACGCAGAGCGGCACGCCGACCGCCAGGTGGCGCCCGCCAGGTACTTTACACGACAGCTCGTGCGGCACGTGCCCGGAGCACACGTGCGAGGTGTGCGGCGAGGCGTGCGCCGACGCGCTGCAGCTGCTCGCGCACGCAGAGCGGCACGCCGACCGCCAGGCGGCGCCCGCCAGGTACTGTACACGACAGCTCGTGCGGCACGTGCCCGGAGCACACGTGCGAGGTGTGCGGCGAGGCGTGCGCCGACGCGCTGCAGCTGCTCGCGCACGCAGAGCGGCACGCCGACCGCCAGGTGGCGCCCGCCAGGTACTGTACACGACAGCTCGTGCGGCACGTGCCCGGAGCACACGTGCGAGGTGTGCGGCGAGGCGTGCGCCGACGCGCTGCAGCTGCTCGCGCACGCAGAGCGGCACGCCGACCGCCAGGCGGCGCCCGCCAGGTACTGTACACGACAGCTCGTGCGGCACGTGCCCGGAGCACACGTGCGAGGTGTGCGGCGAGGCGTGCGCCGACGCGCTGCAGCTGCTCGCGCACGCAGAGCGGCACGCCGACCGCCAGGCGGCGCCCGCCAGGTACTGTACACGACAGCTCGTGCGGCACGTGCCCGGAGCACACGTGCGAGGTGTGCGGCGAGGCGTGCGCCGACGCGCTGCAGCTGCTCGCGCACGCAGAGCGGCACGCCGACCGCCAGGCGGCGCCCGCCAGGTACTGTACACGACAGCTCGTGCGGCACGTGCCCGGAGCACACGTGCGAGGTGTGCGGCGAGGCGTGCGCCGACGCGCTGCAGCTGCTCGCGCACGCAGAGCGGCACGCCGACCGCCAGGCGGCGCCCGCCAGatTAAAGAAAATGGCGCGGGGAAGGAATAACACCTCGTCGAACAGTTCGCGGCAGTTCCCTTGCAGAGAGTGCGGCAAAGTGTTCGGGTCTCGCAGCTCGCAGCAGATCCACATCCGCATCCACACGGGCGAGCGGCCCTACGCCTGCCGCTTCTGCTGGAAAGCGTTCGCCGACGGCGGCACGCTTCGCAAACACGAACGGATACATACCGGTGAGAAGCCGTACGCGTGCGCGGTGTGCCCGCGCGCGTTCAACCAGCGCGTCGTGCTGCGCGAGCACGTGCGCTCGCACCACTCCGCGCCCGACCGCCGCGCCAACGGTGGGCCGGCATTCTGTTGCGTGGTGTGCGGACGAACCCTACACTCAAGTGCGGAGCTAGTGCAGCATCTTATCCAACACTGCGACGCTAACACGGCGCTAAAACGACAACCGCAGGCGAGTATTTACTGCCCGATTAGCTGA
- Protein Sequence
- MDGDGDDFNLHWEEDVESKHIPGVVASEEVICGLDTEQAGSFSNMTNEVVIPDTDQIAAENLMYLSQDVVSYTDAAELAVDPSVECVTEEVITDDWVNPGGQERVEVPLDHFATAALDNIKEENDIDVPLPTDQDQYTAMRPWPCDFCSRRFRKKAALMNHMVAHQNDRPHACNLCGVRYVRKCDLMNHLKVHAMVPDNADPVDYADVLDNSQAIKPKKKRGRRKKNPEPVENGLWENMTSARTQQWSRRARSPPKRPPTPPSPASEPEPPSPPPPPADPSRPFVCRHCGVGFAREKALQSHARVHGGDSPMECSACGELCWSREALSAHARLRHPHQPPPPEREPYDSNSGDDDMEYQLSPLADSGSERAVFDTQRGPELFCQDCGVAFQRADLLRRHQAAAHSHKRHDSSSSTWAEHTCEVCGEACADALQLLAHAERHADRQAAPASCSRTQSGTPTARRRPPGTVHDSSCGTCPEHTCEVCGEACADALQLLAHAERHADRQAAPASCSRTQSGTPTARRRPPGTVHDSSCGTCPEHTCEVCGEACADALQLLAHAERHADRQAAPARYCTRQLVRHVPGAHVRGVRRGVRRRAAAARARRAARRPPGGARQVLYTTARAARARSTRARCAARRAPTRCSCSRTQSGTPTARRRPPGTVHDSSCGTCPEHTCEVCGEACADALQLLAHAERHADRQVAPARYFTRQLVRHVPGAHVRGVRRGVRRRAAAARARRAARRPPGGARQVLYTTARAARARSTRARCAARRAPTRCSCSRTQSGTPTARWRPPGTVHDSSCGTCPEHTCEVCGEACADALQLLAHAERHADRQAAPARYCTRQLVRHVPGAHVRGVRRGVRRRAAAARARRAARRPPGGARQVLYTTARAARARSTRARCAARRAPTRCSCSRTQSGTPTARRRPPGTVHDSSCGTCPEHTCEVCGEACADALQLLAHAERHADRQAAPARLKKMARGRNNTSSNSSRQFPCRECGKVFGSRSSQQIHIRIHTGERPYACRFCWKAFADGGTLRKHERIHTGEKPYACAVCPRAFNQRVVLREHVRSHHSAPDRRANGGPAFCCVVCGRTLHSSAELVQHLIQHCDANTALKRQPQASIYCPIS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -