Cros030324.1
Basic Information
- Insect
- Choristoneura rosaceana
- Gene Symbol
- zfy1
- Assembly
- GCA_037349165.1
- Location
- JAZBNJ010000050.1:312525-330176[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 22 0.087 7 8.3 5.4 1 23 305 327 305 327 0.99 2 22 0.0088 0.7 11.4 2.8 1 23 356 379 356 379 0.95 3 22 0.68 55 5.4 5.2 1 23 410 433 410 433 0.96 4 22 0.066 5.2 8.7 0.6 2 23 442 464 442 464 0.91 5 22 0.039 3.1 9.4 0.4 2 23 477 499 476 499 0.90 6 22 0.039 3.1 9.4 0.4 2 23 512 534 511 534 0.90 7 22 0.039 3.1 9.4 0.4 2 23 547 569 546 569 0.90 8 22 0.039 3.1 9.4 0.4 2 23 582 604 581 604 0.90 9 22 0.18 14 7.3 0.2 2 21 614 633 613 634 0.93 10 22 0.016 1.3 10.6 0.4 2 23 646 668 645 668 0.94 11 22 2.1e-05 0.0017 19.6 0.2 1 23 673 696 673 696 0.97 12 22 0.0005 0.04 15.3 4.3 2 23 720 741 720 741 0.97 13 22 0.031 2.5 9.7 0.1 1 19 747 765 747 766 0.96 14 22 0.0018 0.15 13.5 3.3 2 23 776 799 775 799 0.90 15 22 0.011 0.89 11.1 0.2 4 23 829 850 828 850 0.90 16 22 0.0026 0.21 13.1 3.0 2 23 886 909 885 909 0.90 17 22 0.0026 0.21 13.1 3.0 2 23 945 968 944 968 0.90 18 22 0.0026 0.21 13.1 3.0 2 23 1004 1027 1003 1027 0.90 19 22 0.0026 0.21 13.1 3.0 2 23 1063 1086 1062 1086 0.90 20 22 0.0026 0.21 13.1 3.0 2 23 1122 1145 1121 1145 0.90 21 22 0.011 0.89 11.1 0.2 4 23 1175 1196 1174 1196 0.90 22 22 9.7e-07 7.7e-05 23.9 2.7 1 23 1246 1269 1246 1269 0.97
Sequence Information
- Coding Sequence
- atGGCGTCTACAACGTTGAAATTCAATACGATGAAGGTGGAAGAGGAAAATAGCTCGGACAGCTTGCTGGCTTGCCGCATCTGCCTGGCCAGCGATGGAAAGTTGTTTAACATTCGGGAACGCGGCCTCGAACAAGTGTTTGTGGATATAATGGGCACTACGTGGTCGGTGTGCGACGGGTTCCCGCAGCACGTGTGCTTGTGGTgccgcgcgctgctgctgcGGGCGAGAGagctgcgcgcgcgctgccACCGGGCGGAACAACTGCTCAAAGATGCACTCATGCATCAACACTACATCACAACAAGCTTCATTAGAAGTATAGACCGAGCCTCACACAAATTGACACACACATATTCTCAAAATTGCAACAACAGAGACATTTATGTTATCAACCATGATGACTTACAGTCATTTACACAAAAAAGTAACCCTAATTGGGAAGTTCCAGTAGAAGATGACGCTGAAATGGACATAAAAGACTTTGacactgatgatgatgatgtcaaaTTTGATCCTAGTCAAGACAAAGAAGATGATTTGAAAGATCCTATGCCACATGATACTCCTCAAGCTGATGTAGTAGAGAGTAGTAACAAAACAATCAAAGATCCTATCCCACAGGACACTCCTCAAGTTAACATAGTAGAGAGTagtaacaaaacaataaaagtggaGAGagttttgaaaagaaaaaaagttgtGACAAATAATACAGAGAAAACAAATCGTaaagctaaaaaaaagaaaggacaAACTGGCGACCATCCAAGGTTAATACCATTCTCAACCAAAGAACATTATAAGGCGTTTGAAGAGAAATATAATTTCAAGATTGTAGCGCTAACTGAAGAGGAAATGGTGAAAGAAATGGAAGCAAGGAAGGATGCTGTTACCTATAAAAACGCTGATTTTAAGTGTGAAATGTGCTTCAAAGGTTTCTTTTCTTCGAGAACTCATGAAAAACATATGAATACTCATGATCCGaggctaaggtcacccagtattgtACTATGGTGTCACGAGTGGGGCAGTGAGCGTGTGGTGGTGTGGCAGGCGCGGCGGCACGCGTGCGGGCTGTGCGGCTGCCGCTACTTCACGCCGGCCAGCCTGCGGCGCCACACGCAGAGCTCGCACCAGCTCAAGTTCACGTGCCGGCAGTGCGGAGAGGACATCAccagcaaGTTGAGCGCGGAGCTTCACGCCGCGTTCCACGCGGGCGCGACCTTCAAGTGTGACCACTGCGACCAGCAGTTCCTTAAGAAGACATCTCGCAGCACGCACATGCGGCTGCGGCACCCGAGCGAGATAGCGGACGGCGGCACGTGCGAGCAGTGCGGAGAGACCTTCCTCAGCAGCATGGGGCTCCGCAGGCACAAGACCTGGTCGCACGAGCTACTGGTGAGTCGCTGTCCCGCTCGCGCGCTCACGTGCGAGCAGTGCGGAGAGACCTTCCTCAGCAGCATGGGGCTCCGCAGGCACAAGACCTGGTCGCACGAGCTACTGGTGAGTCGCTGTCCCGCTCGCACGCTCACGTGCGAGCAGTGCGGAGAGACCTTCCTCAGCAGCATGGGGCTCCGCAGGCACAAGACCTGGTCGCACGAGCTACTGGTGAGTCGCTGTCCCGCTCGCGCGCTCACGTGCGAGCAGTGCGGAGAGACCTTCCTCAGCAGCATGGGGCTCCGCAGGCACAAGACCTGGTCGCACGAGCTACTGGTGAGTCGCTGTCCCGCTCGCACGCTCACGTGCGAGCAGTGCGGAGAGACCTTCCTCAGCAGCATGGGGCTCCGCAGGCACAAGACCTGGTCGCACGAGCTACTGCCCAATATCCCGGCGCTGCGCTGTCGCACGTGCAAGATCCGCTTCGAGTCGCAGGACGCCATCGAGAAACACCGGCAGGACCAGCCCGGCGGCAAGTGCGACAACAGACACAGTTCGTGTCCTCGATGCGGCGAGGTGTGTGCGAACGAACAGGAACTGCTGACGCATCGGATGGAACAGCACGGACTGGAGGTGTTCACGTGTGACATGTGCGGCAAGTCGTTCGAGTCGCGCGGCTCCGTGGAGACGCACATGGACCGCGTGCACTTCCTGATCGCGCCGCCCAAGCCGCCCGCCCGCCGCGACTGCCCGCGCCTCGCCCGGGACGCCGCGCCCGTCTGCGAGCACTGCGGGAAGCACTACCAGTCCACGTGGCAACTCAAGAGACATCTCAACACACATGCGGGCATACGGCCTTTTAAATGTACTCTCTGCCCCAAAACGTATATGACTGTACAGGGACTGAAAGCGCACGAGCCGTTCCACACCGGCGCGCGCAAGTGGTGCTGCAAGGAGTGCGGCGCCACCTTCATGCACCAGTCCTCGCTGTACCAGCACCGCCGGTCGGTGAGTCACACAGATGATCCACGGCACAGTATACAAGTGGTGCTGCCAGGAGTGCGGCGCCACCTTCATGCACCAGTCCTCGCTGTACCAGCACCGCCGGAGTGCGGCGCCACCTTCATGCACCAGTCCTCGCTGTACCAGCACCGCCGGTCGGTGAGTCACACAGATGATCCACGGCACAGTATACAAGTGGTGCTGCCAGGAGTGCGGCGCCACCTTCATGCACCAGTCCTCGCTGTACCAGCACCGCCGGTCGTATACAAGTGGTGCTGCCAGGAGTGCGGCGCCACCTTCATGCACCAGTCCTCGCTGTACCAGCACCGCCGGTCGGTGAGTCACACAGATGATCCACGGCACAGTATACAAGTGGTGCTGCCAGGAGTGCGGCGCCACCTTCATGCACCAGTCCTCGCTGTACCAGCACCGCCGGTCGTATACAAGTGGTGCTGCCAGGAGTGCGGCGCCACCTTCATGCACCAGTCCTCGCTGTACCAGCACCGCCGGTCGGTGAGTCACACAGATGATCCACGGCACAGTATACAAGTGGTGCTGCCAGGAGTGCGGCGCCACCTTCATGCACCAGTCCTCGCTGTACCAGCACCGCCGGTCGTATACAAGTGGTGCTGCCAGGAGTGCGGCGCCACCTTCATGCACCAGTCCTCGCTGTACCAGCACCGCCGGTCGGTGAGTCACACAGATGATCCACGGCACAGTATACAAGTGGTGCTGCCAGGAGTGCGGCGCCACCTTCATGCACCAGTCCTCGCTGTACCAGCACCGCCGGTCGTATACAAGTGGTGCTGCCAGGAGTGCGGCGCCACCTTCATGCACCAGTCCTCGCTGTACCAGCACCGCCGGTCGGTGAGTCACACAGATGATCCACGGCACAGTATACAAGTGGTGCTGCCAGGAGTGCGGCGCCACCTTCATGCACCAGTCCTCGCTGTACCAGCACCGCCGGTCGTATACAAGTGGTGCTGCCAGGAGTGCGGCGCCACCTTCATGCACCAGTCCTCGCTGTACCAGCACCGCCGGTCGGTGAGTCACACAGATGATCCACGGCACAGTATACAAGTGGTGCTGCCAGGAGTGCGGCGCCACCTTCATGCACCAGTCCTCGCTGTACCAGCACCGCCGGAGTGCGGCGCCACCTTCATGCACCAGTCCTCGCTGTACCAGCACCGCCGGTCGGTGAGTCACACAGATGATCCACGGCACAGTATACAAGTGGTGCTGCCAGGAGTGCGGCGCCACCTTCATGCACCAGTCCTCGCTGTACCAGCACCGCCGGTCGGTGAGTGCACGCAGATGATCCACGACACaCAAATACACAGCGGCGAGAGAGCGTACCAGTGCCACATCTGCTCTAAAACGTTCACGCAGTCGGGCTCGCTGCAGACACACATCAAATACGTGCACATGAAGATGCAACCGCCGCCGCGCAAGCGGAACAAGAAGCCTGCAGCCTGA
- Protein Sequence
- MASTTLKFNTMKVEEENSSDSLLACRICLASDGKLFNIRERGLEQVFVDIMGTTWSVCDGFPQHVCLWCRALLLRARELRARCHRAEQLLKDALMHQHYITTSFIRSIDRASHKLTHTYSQNCNNRDIYVINHDDLQSFTQKSNPNWEVPVEDDAEMDIKDFDTDDDDVKFDPSQDKEDDLKDPMPHDTPQADVVESSNKTIKDPIPQDTPQVNIVESSNKTIKVERVLKRKKVVTNNTEKTNRKAKKKKGQTGDHPRLIPFSTKEHYKAFEEKYNFKIVALTEEEMVKEMEARKDAVTYKNADFKCEMCFKGFFSSRTHEKHMNTHDPRLRSPSIVLWCHEWGSERVVVWQARRHACGLCGCRYFTPASLRRHTQSSHQLKFTCRQCGEDITSKLSAELHAAFHAGATFKCDHCDQQFLKKTSRSTHMRLRHPSEIADGGTCEQCGETFLSSMGLRRHKTWSHELLVSRCPARALTCEQCGETFLSSMGLRRHKTWSHELLVSRCPARTLTCEQCGETFLSSMGLRRHKTWSHELLVSRCPARALTCEQCGETFLSSMGLRRHKTWSHELLVSRCPARTLTCEQCGETFLSSMGLRRHKTWSHELLPNIPALRCRTCKIRFESQDAIEKHRQDQPGGKCDNRHSSCPRCGEVCANEQELLTHRMEQHGLEVFTCDMCGKSFESRGSVETHMDRVHFLIAPPKPPARRDCPRLARDAAPVCEHCGKHYQSTWQLKRHLNTHAGIRPFKCTLCPKTYMTVQGLKAHEPFHTGARKWCCKECGATFMHQSSLYQHRRSVSHTDDPRHSIQVVLPGVRRHLHAPVLAVPAPPECGATFMHQSSLYQHRRSVSHTDDPRHSIQVVLPGVRRHLHAPVLAVPAPPVVYKWCCQECGATFMHQSSLYQHRRSVSHTDDPRHSIQVVLPGVRRHLHAPVLAVPAPPVVYKWCCQECGATFMHQSSLYQHRRSVSHTDDPRHSIQVVLPGVRRHLHAPVLAVPAPPVVYKWCCQECGATFMHQSSLYQHRRSVSHTDDPRHSIQVVLPGVRRHLHAPVLAVPAPPVVYKWCCQECGATFMHQSSLYQHRRSVSHTDDPRHSIQVVLPGVRRHLHAPVLAVPAPPVVYKWCCQECGATFMHQSSLYQHRRSVSHTDDPRHSIQVVLPGVRRHLHAPVLAVPAPPECGATFMHQSSLYQHRRSVSHTDDPRHSIQVVLPGVRRHLHAPVLAVPAPPVGECTQMIHDTQIHSGERAYQCHICSKTFTQSGSLQTHIKYVHMKMQPPPRKRNKKPAA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -