Cros029736.1
Basic Information
- Insect
- Choristoneura rosaceana
- Gene Symbol
- -
- Assembly
- GCA_037349165.1
- Location
- JAZBNJ010000047.1:945903-950096[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.0057 0.46 12.0 0.4 1 23 95 117 95 117 0.95 2 12 1.9e-05 0.0015 19.8 3.7 3 23 125 145 123 145 0.98 3 12 9.9e-06 0.00079 20.7 0.9 1 23 151 173 151 173 0.98 4 12 0.00026 0.02 16.2 3.8 2 23 181 202 180 202 0.96 5 12 0.00042 0.034 15.5 3.7 1 23 207 229 207 229 0.94 6 12 1e-06 8e-05 23.8 0.5 1 23 235 257 235 257 0.97 7 12 9e-05 0.0072 17.6 0.4 2 23 264 285 263 285 0.93 8 12 5.4e-05 0.0043 18.3 2.3 1 23 293 315 293 315 0.98 9 12 3.1e-05 0.0025 19.1 2.9 1 23 321 343 321 343 0.97 10 12 1e-06 8.1e-05 23.8 2.8 1 23 349 371 349 371 0.99 11 12 2.1e-05 0.0017 19.6 5.4 1 23 377 399 377 399 0.98 12 12 3.5e-06 0.00028 22.1 1.5 1 23 405 427 405 427 0.97
Sequence Information
- Coding Sequence
- ATGTCTTTCGACACAGTGTTGATCAAACAAGAACCCTTCGAATACGTGGACGACCCGGGAACAGTGGAAGAGTCAGAACCGTTCAAGAATGTTGAAATAAAACGCGAAGTTAAGATAGAGGTCGAAGTTTCTGTAGACCCTTGCGTGAAGTTCGAACCGCCGGCGTGCTACCCGGAGTCCTCAGGGGATGTTAAAGATGTTGCTGTGAAATGGGAACCAGACCGACTGAAACAGGATCCGGCAAACCCTCAACCCTGGCCTCACCAGCCCAAAGCCACACCATTCCTCTGCGACGTCTGCAGAATACCATTCTACCAAGTCAACGAGCTCCGAGAACACAAGAAGACACACATGATCGGTGAAGAATATTGGTGCAATATATGTGACAAGCGGTTCAAGAAGAAAGCCAGTTTGTGTATACATTACAGAAAGCACACGGGATATAAACCGTATACATGTGTAGTCTGCCAAAAGGGATTCACACAGAAAGTATATTTAAACAAACATTTAACAATACACGGAGACATACCAAAATCAGTGCAgtgcgatgtgtgtaacaaaaAGTTTACGGACAAATTCTCCTTAAAGGTCCACTGTCGAAGCCACACAGCGAAAACTTATGCATGTGATATGTGTGACAAGCGTTTCGCTTTCAAATCACACTTCGAAACACATAAGTTCCTTCACACGGGTCAGAAACCGTTCATCTGTAGTGTGTGCGGAAAGGAATTTGCCAGAAAAAGCTACATGCGAGTGCATATGATGCAGCATGCTGACGACAAGTCTCTGTCCTGCGATGTGTGTGAGAAAAGGTTCACCCGGGTCTCCTCCCTGCGTGCACACAGTTTGTTACACACAAGCCCAATAGGCAAACCCTTCAAATGTGAGTTTTGTGACAAACTGTTCACTTTAAAATCATCGCTCCGTGTTCACAAGAAAATACACACCAGCGACAAACCCTTCATTTGTGATCTGTGCGACAGAAGATTCATACAGAAGGTGCATTTGATAACGCATATGCTGCACCACTCGGATCAGAAACCGTACCAGTGTGATATCTGTCAGAAGCAGTTTGTGCAGAAGCATAACTTGAACGTGCATAAGCGTATACACTCAGATGAGAAGCCATTTGAATGTGACATATGTCACAAACAGTTCAAACATAAATCCCATTTGGCTGGGCATCAGCTAGTTCATACGGGTGCTAAGCAATTCCCTTGTGAGTTGTGTGGTAAATGCTTTGCACTGAAATCTAATATGAAATCCCACATGCTCTTGCACGCTGATGAGACCTCGGAGAGATATTATTTGGGAGAAAAAATTGCTAAGAAGTTGAGGCAGGAATTGGAACAGAAACGGGGTGTAAGAAATGAAGAGAGACAAACTGCTACTGTTACTACAACTAGCATTTCTACACTTCCAATGTCTAACCTTGTAGAATAA
- Protein Sequence
- MSFDTVLIKQEPFEYVDDPGTVEESEPFKNVEIKREVKIEVEVSVDPCVKFEPPACYPESSGDVKDVAVKWEPDRLKQDPANPQPWPHQPKATPFLCDVCRIPFYQVNELREHKKTHMIGEEYWCNICDKRFKKKASLCIHYRKHTGYKPYTCVVCQKGFTQKVYLNKHLTIHGDIPKSVQCDVCNKKFTDKFSLKVHCRSHTAKTYACDMCDKRFAFKSHFETHKFLHTGQKPFICSVCGKEFARKSYMRVHMMQHADDKSLSCDVCEKRFTRVSSLRAHSLLHTSPIGKPFKCEFCDKLFTLKSSLRVHKKIHTSDKPFICDLCDRRFIQKVHLITHMLHHSDQKPYQCDICQKQFVQKHNLNVHKRIHSDEKPFECDICHKQFKHKSHLAGHQLVHTGAKQFPCELCGKCFALKSNMKSHMLLHADETSERYYLGEKIAKKLRQELEQKRGVRNEERQTATVTTTSISTLPMSNLVE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00155520;
- 90% Identity
- -
- 80% Identity
- -