Cros030138.1
Basic Information
- Insect
- Choristoneura rosaceana
- Gene Symbol
- Znf532
- Assembly
- GCA_037349165.1
- Location
- JAZBNJ010000048.1:3345960-3351475[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 24 0.0025 0.2 13.1 0.6 1 23 157 180 157 180 0.94 2 24 1.3 1e+02 4.6 1.1 2 23 208 230 207 230 0.94 3 24 0.019 1.5 10.3 3.3 2 23 253 274 252 274 0.95 4 24 0.00029 0.024 16.0 0.1 1 23 278 300 278 300 0.98 5 24 0.00069 0.055 14.9 0.4 1 23 305 328 305 328 0.96 6 24 0.00082 0.066 14.6 2.5 1 23 334 356 334 356 0.97 7 24 4.3e-06 0.00034 21.8 0.9 1 23 362 384 362 384 0.98 8 24 2.6 2.1e+02 3.6 1.3 1 23 472 495 472 495 0.93 9 24 5.3 4.3e+02 2.6 0.3 3 23 568 588 566 588 0.89 10 24 0.005 0.4 12.2 1.2 1 23 592 614 592 614 0.98 11 24 0.49 39 5.9 0.4 1 23 619 642 619 642 0.90 12 24 0.0088 0.7 11.4 0.6 3 23 650 671 649 671 0.96 13 24 0.0019 0.15 13.5 0.3 2 23 679 701 679 701 0.97 14 24 0.00073 0.059 14.8 1.6 1 23 707 729 707 729 0.94 15 24 0.00069 0.056 14.9 0.9 1 23 812 835 812 835 0.92 16 24 0.021 1.6 10.2 0.1 2 23 860 882 859 882 0.95 17 24 0.16 13 7.4 4.3 2 23 905 926 904 926 0.95 18 24 0.19 15 7.2 0.2 1 23 930 952 930 952 0.96 19 24 9.4e-05 0.0075 17.6 1.0 1 23 957 980 957 980 0.95 20 24 0.0058 0.46 12.0 0.3 2 23 987 1009 986 1009 0.96 21 24 0.0012 0.098 14.1 0.7 2 23 1017 1039 1016 1039 0.95 22 24 0.00066 0.053 14.9 0.5 2 23 1046 1067 1046 1067 0.97 23 24 0.0001 0.0081 17.5 0.8 1 23 1073 1095 1073 1095 0.98 24 24 0.0016 0.13 13.7 5.1 1 23 1101 1124 1101 1124 0.98
Sequence Information
- Coding Sequence
- ATGGATATTAAAGATGTGATTACTCTGAATGAAGACGAGGAAAGTCTATTGGAAGAACAAGAAACTGATCAAATTGAAGCCAGCGATGATACACGATCGTCACCACCTTCCTGTACTGAATATGAATCGGACTCAGGCTCATCTGTTCATATAATAGATACATCTGAATCAGCTTCACCTTCAAATGCTGAGAATATCGATGTATTTGATGATATTTCTTCAAATATTGAATATCTCGATGAAACTGAGGAAGAATTCCGTTTAACTGAAAGTATACAAAAATCGAAACAAAAAACGGAAAGCCAAAATAACAATGCAAAAGCTGACAAAGAAACTCGTAAATATATTAATCgtaataaatctaaaataaaaGTACCAAATGATAAGGAAGTCCTGTACCACCACGATAATTTGCGTATCGTTCTTCGATGCTCGAACGCTACGACGTTTTTATGCCGCGGGATATGGTACTTGTGCACTCTTTGCCGCACTAAATATACAGACCCGAGAGATTTAAAGGCACATACATTGAAAGTCCACAGTTCTCAGCTATCCCAGCGGAAGCTGTACTCAGCACGGCAAATGAAGCGCTACATCGTCAAGCTTGATATAACCAACTTGAAATGTAAACTATGCAACTCAAGAATCAACAGTTTGAAGGACTTAATGGAACACTTGTATAGGAAACACGCTGAAGGGATACACAGGGATCTGCCGAACCATATGATCCCTTTTAACTTTGATAACGAAGTGTTGCGCTGCACCGAATGCGATCGCGAATTTACGAATTTCAAAATGCTGCAGTGCCACATGAATGATCACTACAAGAACTTTACGTGCGACGTGTGCGACACAGGCTACGTGACATATGGTAGTCTCATGCAGCATATGCTTCTGCACGCCGATGGCGAGTACACTTGCGAGTGGTGCCAGAAAGTGTTTGATAACAAGCGTAAATTAGGGGATCACGTGAAACTGGTGCATCTTGGGGAAAGGAATCACGAGTGCTCGTTCTGTGAAAGGCGATTTTCCGCGCCGCATATGTTGAAAGCACATATGACGGTGCATTCCACTGCGAAGAATTTCAAGTGTGTTGTGTGTGAGAAAGCCTTCTCTAGGAAAAAGACGCTTCGGGAACATGTCAGGATCCATGCCAACGACAGAAGGTTTAGGTGTGTAATGACGACAAATGTCAAAATCGAATTGCTGAACAGAGAAGACAATACATCCGATGAAGACACTGCCTATATAAAAGATCCAGATGGCCAACAAGTATCCACGACTAAGAATgataaaaaagataaagatCAAAAACCCAAGGGCCCTACCGACGTTGAAATGCATCGGAACAATATTAGAGTAATTCTGGAATGCACAAACGCGACGCCTATACGATGTCATGGCGGCATAGGATACCAGTGTTGCTTCTGTCCTGAGCAGCATCCCAACCCCGCTGACCTCAAAATTCACACAATAGAGAAGCACGACAGCAAAACGAAGCAAGCATTCATGAAAGGCAAAACTATGTCCGAGTTTTTCGTCAAGCTAGACATCACTGCCTTGTGCTGTAAACTATGCGGCGCGGAAATAGATGCCTTAGAGCCGCTGATGGCTCATCTATCAGAAATCCACGGAAAAAAACTTTACACAGACATCAGAAGTCACATTCTTCCGTTCAAGTTCAACGACGAAACATTGCGCTGCATTTTTTGCCCTAACGATTTCAACACATTCAAGGTTTTACAAGGTCACATGAATGTCCACTTTCGGAATTTTATTTGCGAGACATGTGACAGCGGCTTCGTCACTCGCAACATGCGTCGAAATCACATGAAAACTCACGATACTGGCTCGTTTATCTGCAGTTTCTGTCCTAAAGTGTACGATACGTTACTAAAACAACGAGCTCACGAAAAGCAGGTTCACAGGCATCCAAAAATGAACCTTTGCCCGTACTGTAACGAAAGGTTCCGCGATTTTACTCAGAAGGTTCGGCATCTAAAGGAGGCGCATGGTGTTCAGAAGGAGTCGCCGAAATGCAAGGCTTGCGACAGAAGTTTTGAAACGATGGCAGCGCTGAGCGTGCACATTAAAAGGGATCACTTAATACAAAGGCCGCATAAGTGTTCCGAATGCGACATGtctttttacgtgaaagcaCAGTTGAGGAATCATTTCGTTATACACTCCGGTACAAGAGAATTTGCGTGTTCGGTGTGCTTAAAGACCTTTGAACTCGGAGCAGCTCAAAATGTAAAGACAAATTCAGAATTTACTAAGTTAGAACAGAAAACATCAGAGAACACAGCGAATAAGCTCAAGAAGAAGTGTTTATCCTTAAAAGCATCAGAAATAAAATTACACCAAGAAAACCTAAGTATCGTTTTACGATGCTCAAGCGCAACACCGATCCGTGCTCAAGGCAGCATCGGATACTGCTGTTACTACTGCGACAGAGAGTATGCTGACCCGGCCGACCTGAAAAAACACACCGCTGAAAACCACTATCACATTGACAAACCCTTCAAGTCTCTCCGTAATTCACACTACTGCATGAAAATAGACATCACTGGGCTGCGTTGCAAACTTTGCGACCTCCCTTTCGATCAGTTAGAACCTCTAATGGATCATTTAAAAAACATTCACGAGGAGCCGATACACACACACTTAGACAACCATTTGATTCCGTTTAAATTTGACAGCGACCAATTGAGGTGCGTGGCTTGCCACTTCGAATTTTACAACTTCCATTCATTACTGGATCATATGCGGAAGCATTACAGGAATTACATCTGCGATGTTTGCGACGAAGGGTATTTAAACTATAACAGTTTAAGGACCCATCGTTTAGCGCATAATAAAGGAGAGCATCCGTGCAAAGAATGTGATAAAATATTTAGCAGCAGCACCAAACTCAATGGTCACACGAGAGCTGTGCATCGAGGTATAAAGAAGAACAAATGTGGCTATTGCGGCGAGAAGTTCGCTGAACGAAGTTGGAAATTGAATCACATGGAGAAAGTCCATGGGATTAAAAAGCCAGAGATTAAATGTAAattgtgtaataaaaaatattcgtcTCTGAAAACTTTAGATGGTCACATGCGAGGAATACATATGATGGAGAAGACAGAAGTATGTCCGATATGTGGAATGAAGTTCTTCAAGAGGGATACAATGAAGCTTCATATGACGATTCATACAGGGTATCGCGCGTTCGTATGCGCGGTTTGCTCAAAGTCGTTTTTGAGGAAAACTACGCTGAGAGAGCATATGAGAATACACATAAATGATCGCCGGTTTAAATGCGAACATTGCAATATGGCGTTCATACAAAAGTGTAGTTGGAAGGGACACATGCGCTCGAAACATGGGGAAGACCTTTGA
- Protein Sequence
- MDIKDVITLNEDEESLLEEQETDQIEASDDTRSSPPSCTEYESDSGSSVHIIDTSESASPSNAENIDVFDDISSNIEYLDETEEEFRLTESIQKSKQKTESQNNNAKADKETRKYINRNKSKIKVPNDKEVLYHHDNLRIVLRCSNATTFLCRGIWYLCTLCRTKYTDPRDLKAHTLKVHSSQLSQRKLYSARQMKRYIVKLDITNLKCKLCNSRINSLKDLMEHLYRKHAEGIHRDLPNHMIPFNFDNEVLRCTECDREFTNFKMLQCHMNDHYKNFTCDVCDTGYVTYGSLMQHMLLHADGEYTCEWCQKVFDNKRKLGDHVKLVHLGERNHECSFCERRFSAPHMLKAHMTVHSTAKNFKCVVCEKAFSRKKTLREHVRIHANDRRFRCVMTTNVKIELLNREDNTSDEDTAYIKDPDGQQVSTTKNDKKDKDQKPKGPTDVEMHRNNIRVILECTNATPIRCHGGIGYQCCFCPEQHPNPADLKIHTIEKHDSKTKQAFMKGKTMSEFFVKLDITALCCKLCGAEIDALEPLMAHLSEIHGKKLYTDIRSHILPFKFNDETLRCIFCPNDFNTFKVLQGHMNVHFRNFICETCDSGFVTRNMRRNHMKTHDTGSFICSFCPKVYDTLLKQRAHEKQVHRHPKMNLCPYCNERFRDFTQKVRHLKEAHGVQKESPKCKACDRSFETMAALSVHIKRDHLIQRPHKCSECDMSFYVKAQLRNHFVIHSGTREFACSVCLKTFELGAAQNVKTNSEFTKLEQKTSENTANKLKKKCLSLKASEIKLHQENLSIVLRCSSATPIRAQGSIGYCCYYCDREYADPADLKKHTAENHYHIDKPFKSLRNSHYCMKIDITGLRCKLCDLPFDQLEPLMDHLKNIHEEPIHTHLDNHLIPFKFDSDQLRCVACHFEFYNFHSLLDHMRKHYRNYICDVCDEGYLNYNSLRTHRLAHNKGEHPCKECDKIFSSSTKLNGHTRAVHRGIKKNKCGYCGEKFAERSWKLNHMEKVHGIKKPEIKCKLCNKKYSSLKTLDGHMRGIHMMEKTEVCPICGMKFFKRDTMKLHMTIHTGYRAFVCAVCSKSFLRKTTLREHMRIHINDRRFKCEHCNMAFIQKCSWKGHMRSKHGEDL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -