Basic Information

Insect: Choristoneura rosaceana
Gene Symbol: -
Assembly: GCA_037349165.1
Location: JAZBNJ010000068.1:398120-404593[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 0.044 3.5 9.2 2.1 2 22 113 133 112 137 0.92

2 18 0.1 8.1 8.1 0.1 1 21 157 177 157 178 0.96

3 18 0.57 46 5.7 0.2 2 16 216 230 215 232 0.85

4 18 0.02 1.6 10.3 1.2 1 22 242 263 242 263 0.95

5 18 2e-05 0.0016 19.7 4.2 1 23 270 292 270 292 0.98

6 18 0.00013 0.01 17.2 1.3 1 23 297 319 297 319 0.98

7 18 8.6e-06 0.00069 20.9 3.3 1 23 325 347 325 347 0.98

8 18 6e-06 0.00048 21.4 2.5 1 23 356 378 356 378 0.98

9 18 0.073 5.9 8.5 1.7 1 23 384 406 384 406 0.98

10 18 7.3e-06 0.00059 21.1 1.1 1 23 412 434 412 434 0.97

11 18 3.4e-05 0.0027 19.0 7.0 1 23 440 462 440 462 0.98

12 18 0.0013 0.1 14.0 6.7 1 23 478 500 478 500 0.96

13 18 0.76 61 5.3 0.4 1 14 506 519 506 520 0.90

14 18 2.1e-06 0.00017 22.8 0.9 1 23 523 545 523 545 0.98

15 18 2.5e-06 0.0002 22.6 1.1 1 23 551 573 551 573 0.98

16 18 2e-06 0.00016 22.9 4.1 1 23 579 601 579 601 0.99

17 18 0.0038 0.3 12.5 9.8 1 23 611 633 611 633 0.96

18 18 2 1.6e+02 4.0 0.7 1 12 643 654 643 658 0.83

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	0.044	3.5	9.2	2.1	2	22	113	133	112	137	0.92
2	18	0.1	8.1	8.1	0.1	1	21	157	177	157	178	0.96
3	18	0.57	46	5.7	0.2	2	16	216	230	215	232	0.85
4	18	0.02	1.6	10.3	1.2	1	22	242	263	242	263	0.95
5	18	2e-05	0.0016	19.7	4.2	1	23	270	292	270	292	0.98
6	18	0.00013	0.01	17.2	1.3	1	23	297	319	297	319	0.98
7	18	8.6e-06	0.00069	20.9	3.3	1	23	325	347	325	347	0.98
8	18	6e-06	0.00048	21.4	2.5	1	23	356	378	356	378	0.98
9	18	0.073	5.9	8.5	1.7	1	23	384	406	384	406	0.98
10	18	7.3e-06	0.00059	21.1	1.1	1	23	412	434	412	434	0.97
11	18	3.4e-05	0.0027	19.0	7.0	1	23	440	462	440	462	0.98
12	18	0.0013	0.1	14.0	6.7	1	23	478	500	478	500	0.96
13	18	0.76	61	5.3	0.4	1	14	506	519	506	520	0.90
14	18	2.1e-06	0.00017	22.8	0.9	1	23	523	545	523	545	0.98
15	18	2.5e-06	0.0002	22.6	1.1	1	23	551	573	551	573	0.98
16	18	2e-06	0.00016	22.9	4.1	1	23	579	601	579	601	0.99
17	18	0.0038	0.3	12.5	9.8	1	23	611	633	611	633	0.96
18	18	2	1.6e+02	4.0	0.7	1	12	643	654	643	658	0.83

Sequence Information

Coding Sequence: atgaaattcgTTGACAGAGCAGAGCCGACCACGGTGAAGCAGGAGTGCAGTGACGCTGAGGCGGACGGCTCGGACGAGTCCTGCGCCAGCAGCGAGTGTTCGGGAGAGTACCTCAAGGAGGAGCCTGCAGATGCTGCCGGCTGCGACGCAGAGCTTCTCATGAGTATGGTCAGGCCTTGTACCGTCCGCCTCTCGCGCGCCCTGGCGCAGGAGTACGGGGCCAGCACGCCGCGCGCCGCACCGCGCCGCGGCTCGCGCCATGACGCCCAGGAACCTGGCGCCGCCACTCGAACGACTCCAATGCGCCAGAAAGTTCACGCGCAGGAACAAATGCTGTCTTGTGACAGGTGCAGCGCACAgtacacacaaaaaaataaactaattagaCATTTGAGAAGTTGCGCAAGTCATATTTGGCAAGCATCTAAAAAATCCGTGCTCGCTAGAAATACCAGAAAAGAAAAGTCATTCTCTTGCACCCAGTGCACAGAACAGTTTCTGTCTAAAGCCGACTTAGCTGTACACAGACGAGCGTGCCCTCGAGGGACGGGCCTTCCACCTAACAGGTGCGGCGCTTGCGCGGGACAAGCACGACTAGCACGAGGCAAGCTCATCCACATTCCTTGCGCAGAGAAAAAAACTCTCTCTTGTGACACTTGCGGGAAGAAATAtgctgaaaaatattactttgctGCTGATATAAAACCAGCAAAGAAGCGACTTTATGAATGCGATGTTTGTTCACAACAGTTTTCGGGAAAATGTTATTTGGCCGTGCACAAGAAGACAAACACAACATGCAGCTCTTACTGCTGCGATACTTGTAGCAAAACATACAAAAAGAAGTCACAGTTAATTATCCACATTCGCAGTCACACGGGGGAGCCTTACCGCTGTGATGTTTGTCGGAAGCGGTTCAAGTTGTTGTCGCAATTAAATGATCATAAACTCGTCCACACGGGGGAGCAAGGTTACAGTTGCGATGTCTGTCAGACGCGTTTCACGCATagacttaatttaattagacACATGAAAATGCACAGGGCTGATGCGATGAAAAGAGGTTATTGCTGCGATATTTGTAACAAGAAATACAAAGAAAAGTCTGACTTAATTATCCACATTCGCCGTCATATGGGGAAGAAGCCTTATAGCTGTGATGTCTGTCAGAAGTGGTTTCAAAAATTATCTTTTCTTTCTGATCACAAACGGAGCCACATGGTGGAGAAGCGTTACAGCTGCGATGTCTGTCAGAAACAGTTTACACGCTCTTCAGGCTTGTCTCGTCATAAACTCATCCACACAGGCGAGAAGCCTTACTGCTGTGATGTCTGTCAGAAGCAGTTTACACGCTCTGGACACTTGTCACGTCATAAACGTACCCACACGGGGAATAAACCTTACTGCTCTGATGTCACGGCGGTTACAGCCCACTGCTGTGATTTCTGTCAGAAGCGGTTCAAAACTTTATCGAAATTAGTTAAACATGAACGCGTCCATATGGTGGAGAGACCTTACAGCTGCGATATGTGTCAGGTGCGTTTCAAACACAGAGGCGAAAAGCCTTACAGCTGCGATGTCTGTCAGAAGCAGTTTGCACGCTCTTCAGCCTTGTCTCGTCATAAACGCATCCACACGGGCGAAAATCTTTACAGCTGCGATATCTGTCAGAAGCAGTTTACACGCTCTTCAGCCTTGTCTCGTCATAAACTCATCCACACAGGCGAAAAGCCTTACAGCTGCGATGTCTGTCAGAAGCAGTTTGCACGCTCTTCACACTTGTCTCGTCATAAACGCACCCACACGGGGGAGAAACGCGATGCAACACCCCACTGCTGCAATGTCTGTCAGAAGCATTTTATACATCCGTCACATTTAGCTAGGCATAAACTCATCCACACGGGCACAGACACGGGGGAGCGTCGTTACTGTTGCAATGTCTGTCAGATGCGTTTCACACTAAAAGAACTTGAGGAAGGAGATCCACTAGCTCTTCAGCTGGAGCAGCTGCCGAACAGGCTCAGGTCAGCAAGCCCCGCAAGTATTGTGGTTGACTGA
Protein Sequence: MKFVDRAEPTTVKQECSDAEADGSDESCASSECSGEYLKEEPADAAGCDAELLMSMVRPCTVRLSRALAQEYGASTPRAAPRRGSRHDAQEPGAATRTTPMRQKVHAQEQMLSCDRCSAQYTQKNKLIRHLRSCASHIWQASKKSVLARNTRKEKSFSCTQCTEQFLSKADLAVHRRACPRGTGLPPNRCGACAGQARLARGKLIHIPCAEKKTLSCDTCGKKYAEKYYFAADIKPAKKRLYECDVCSQQFSGKCYLAVHKKTNTTCSSYCCDTCSKTYKKKSQLIIHIRSHTGEPYRCDVCRKRFKLLSQLNDHKLVHTGEQGYSCDVCQTRFTHRLNLIRHMKMHRADAMKRGYCCDICNKKYKEKSDLIIHIRRHMGKKPYSCDVCQKWFQKLSFLSDHKRSHMVEKRYSCDVCQKQFTRSSGLSRHKLIHTGEKPYCCDVCQKQFTRSGHLSRHKRTHTGNKPYCSDVTAVTAHCCDFCQKRFKTLSKLVKHERVHMVERPYSCDMCQVRFKHRGEKPYSCDVCQKQFARSSALSRHKRIHTGENLYSCDICQKQFTRSSALSRHKLIHTGEKPYSCDVCQKQFARSSHLSRHKRTHTGEKRDATPHCCNVCQKHFIHPSHLARHKLIHTGTDTGERRYCCNVCQMRFTLKELEEGDPLALQLEQLPNRLRSASPASIVVD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -