Basic Information

Insect: Choristoneura rosaceana
Gene Symbol: -
Assembly: GCA_037349165.1
Location: JAZBNJ010000050.1:585760-614010[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 25 7.9e-05 0.0063 17.8 1.3 1 23 356 378 356 378 0.98

2 25 4.8 3.9e+02 2.8 2.3 3 23 430 451 428 451 0.93

3 25 0.01 0.82 11.2 1.1 1 21 457 477 457 481 0.92

4 25 1.1 91 4.7 2.7 2 23 486 507 485 507 0.95

5 25 0.0037 0.3 12.6 0.6 1 23 512 535 512 535 0.96

6 25 0.0039 0.31 12.5 0.1 3 23 542 563 541 563 0.97

7 25 0.00031 0.025 16.0 0.2 1 20 572 591 572 593 0.95

8 25 0.78 62 5.3 0.2 3 23 605 626 603 626 0.88

9 25 0.0011 0.088 14.2 0.6 2 23 632 654 632 654 0.94

10 25 0.003 0.24 12.9 0.4 2 23 672 693 671 693 0.96

11 25 1e-06 8.3e-05 23.8 4.0 1 23 699 721 699 721 0.99

12 25 2e-05 0.0016 19.7 0.6 1 23 727 750 727 750 0.97

13 25 5.1 4.1e+02 2.7 0.0 2 23 756 777 755 777 0.86

14 25 0.00082 0.065 14.6 1.4 1 23 1137 1159 1137 1159 0.96

15 25 0.11 9 7.9 3.2 2 20 1166 1184 1166 1187 0.94

16 25 0.43 34 6.1 3.5 1 23 1191 1213 1191 1213 0.91

17 25 0.00027 0.021 16.2 2.2 1 23 1218 1241 1218 1241 0.98

18 25 3.5 2.8e+02 3.2 0.0 3 11 1248 1256 1247 1269 0.78

19 25 0.0043 0.35 12.4 0.1 2 21 1280 1299 1279 1300 0.93

20 25 2.9 2.3e+02 3.5 1.4 3 23 1312 1333 1310 1333 0.88

21 25 0.0076 0.61 11.6 0.5 2 23 1339 1361 1339 1361 0.94

22 25 0.00027 0.022 16.2 0.1 2 23 1384 1405 1383 1405 0.96

23 25 3.9e-05 0.0031 18.8 6.1 1 23 1411 1433 1411 1433 0.99

24 25 2.5e-06 0.0002 22.5 0.8 1 23 1439 1462 1439 1462 0.97

25 25 0.62 50 5.6 0.0 2 23 1468 1489 1467 1489 0.92

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	25	7.9e-05	0.0063	17.8	1.3	1	23	356	378	356	378	0.98
2	25	4.8	3.9e+02	2.8	2.3	3	23	430	451	428	451	0.93
3	25	0.01	0.82	11.2	1.1	1	21	457	477	457	481	0.92
4	25	1.1	91	4.7	2.7	2	23	486	507	485	507	0.95
5	25	0.0037	0.3	12.6	0.6	1	23	512	535	512	535	0.96
6	25	0.0039	0.31	12.5	0.1	3	23	542	563	541	563	0.97
7	25	0.00031	0.025	16.0	0.2	1	20	572	591	572	593	0.95
8	25	0.78	62	5.3	0.2	3	23	605	626	603	626	0.88
9	25	0.0011	0.088	14.2	0.6	2	23	632	654	632	654	0.94
10	25	0.003	0.24	12.9	0.4	2	23	672	693	671	693	0.96
11	25	1e-06	8.3e-05	23.8	4.0	1	23	699	721	699	721	0.99
12	25	2e-05	0.0016	19.7	0.6	1	23	727	750	727	750	0.97
13	25	5.1	4.1e+02	2.7	0.0	2	23	756	777	755	777	0.86
14	25	0.00082	0.065	14.6	1.4	1	23	1137	1159	1137	1159	0.96
15	25	0.11	9	7.9	3.2	2	20	1166	1184	1166	1187	0.94
16	25	0.43	34	6.1	3.5	1	23	1191	1213	1191	1213	0.91
17	25	0.00027	0.021	16.2	2.2	1	23	1218	1241	1218	1241	0.98
18	25	3.5	2.8e+02	3.2	0.0	3	11	1248	1256	1247	1269	0.78
19	25	0.0043	0.35	12.4	0.1	2	21	1280	1299	1279	1300	0.93
20	25	2.9	2.3e+02	3.5	1.4	3	23	1312	1333	1310	1333	0.88
21	25	0.0076	0.61	11.6	0.5	2	23	1339	1361	1339	1361	0.94
22	25	0.00027	0.022	16.2	0.1	2	23	1384	1405	1383	1405	0.96
23	25	3.9e-05	0.0031	18.8	6.1	1	23	1411	1433	1411	1433	0.99
24	25	2.5e-06	0.0002	22.5	0.8	1	23	1439	1462	1439	1462	0.97
25	25	0.62	50	5.6	0.0	2	23	1468	1489	1467	1489	0.92

Sequence Information

Coding Sequence: ATGTTCACGAATAGTGAAGGCATAAAGAAACTTATGCCGAATGCCGTACCAAAGCCGTTCTTAGATTCTTCATCAAATGACGAACCAAGTCCTAATATGAGAGAGTGTTCTGATGAAGCTGGATCGAGCGAGGAGCTGGTCGCTTGTCGCGTGTGCCTCGCGGCGGACGGCCGGCTGTATGCCATAAGCGGTAGCGGGTTGGAGGACACGCTCGCGGCGCTCACTGAGGCAGTGttgCCAGCAGAAGACACTTTCCCTCGCCACCTGTGCGTGTTCTGCATGGCGAAGCTGTCAAAATGCGCCGCCTttcgtgacagctgtcaccggAGCACGGCGCTGCTGCAGACCCTACTGGAAAAGGGGCCGTTAAAAATGAACGTCATTAAGGCTTACAACCGGAAGTTAAGGCAGCAGACAAACAATCTCACACGTGCTAAAGTATTTCAGTTCGGAACTGACTCGTTTACAGAAATAACGCCTGTTATTAAAACTGAAACTAGTGAAAGACTAGACGAAGAAGCTAAATGTGCAGAAACGGAACATATAGACagtgaaattataaaaaaagatgCAAGTGATGTAAATGTATGTGCTTTAGAACTACCAATAGATAAACGTGAAAGACCTAGAAGAAACTTCAAAACGAGAGCCAAACAAATTATGGAATATATAAAAGTTGAATTGGGAATTGATGATAATGCAGATTCAGAGTTAGATGACAGCTTAGAACCTGAGGTGAATGATAGCAGTGATGCTGATAGTGATACATCGGAAGAAACTCTGGCTGCTGTCAAAAAACGTAAAAGAAGAAAAGTGACTTTAGTAAAAGAGAATACTGCTAAACAaccaaaaaaacatgaaattttaaACACAGAAGATAAACACCCCACTGATGTAGATACTGATACACCTGAAGCAGCAACTAAATTAAGAAAAAGAGTTGCTATTAAATCTGCAAATACAAAATCAGTTATTGAGAAGAAAAATAATCGCAAAACAAAACCTTTGAGTGCAGAAGAACAGAAAGAGAAGGTAGTGAAGAGGAAAAAGAATAACAAGTCCGTCTATAGCTGCGATATATGCGAGAAGGAGTACAAAAGTGAAAGTAATCTAAAGATGCACAAGAGTCGCCATGATCCGAATATATCAAAAGAAACATTCGCTACAATGAAAAgcgATGCCTATTTAGAGTTTGGGAAACAatataactttgaaataaaactgtTGACTAAAGAGGAACAAAAGCAGAGAATACAGGAGAGGTTAAAAAGCAGAACTACGTACGGCTGCGACGTGTGTGGGAAGGACCATTGCAAGGAAAGCACACTAATCGCGCATAAAACTTCTTACCACAACCCGAGTTTGCCGTTCGAGTGCGACGTTTGTTTCTACCGGTTCCGTATCCGGCAGGAGTTGCGGAAGCACCAGCTCGAGGACCGGCATCGCCTCATCCTGACCTGCAACGAGTGCAAACATGTCACAAGGAACAGAACGTACGCCAAGGAGCATTTCCTAATGCACAGAGGGAAAACATTCGCGTGCCCCTACTGCGAGTTGAAATACGACCGCCAGAGCTCTTACTACGGCCACATAAGGCAGCAGCACCCTGGAGAGAACGAGGCCTGCGACCAGTGCGGGGAGACCTTCGCGGGGAAGGTCGGCTTGCTGGTGCATAAGCGGATGCAGCATAAGAACGATAAACCAAATGGAGAGTTTAAATGTAAAGACTGCGATGTCAAGTTTTCGAGCGACGAAGCGTTACAAAGGCATTTGGAATTGGGCGCGGGCGTGCCGCATGCGGCGCTGTGGCCGTGTGCCGCATGCGGCGAGAGCTGCGGCAGCGAGGAAGCGCTCAAACACCATACGGCAGAACAACACTCGTCAGAACAGCGTTATTGCCAAAAGTGCAACAAGACGTTCTCTGACGCGGCGTCGTTCGCTCTCCACGTGGAGCGCAAGCACCGCAACCGGCGCGCGTCGCACGTGCGCCTGCGCGACCGCTTCGCGCGCGTCGTCTGCGAGCTGTGCGGGAAGGTGTTCACGTGCCTGGCGACGCTGCAGTACCACATGAACGCACACCTGGGTCTCACGCCGTACCAGTGCCAGCACTGCCCCAAAGCCTTCTCTCACAAAGCCAAACTTCAGTTACACATGCGGATACACACGGGGGAGAAGCCGTACAAGTGTGAACAGTGCCCGCAGGCGTTCTCCGCGCGAGGGAACTTCACCAGACACATGAAAAACGTACATTTGCGTGTACAGGTGGAGTGCGACAGATGCGGCAAGACCATGGGCGCGGGCTCCCTCGCGGCGCACGTCCGCGCCGTCCACATGAATCAGCGGCAGGTGCGACGGAAACGGGACCGCGCGAGCAAGACACAAGCCCGTGTTGCGGAATCGGTCCCCAGCTCGCTGATCCTGCGCGCGCAGTGGGTCCTGGCTCTCGGGCCGCTGCGGGACGACTCTTACGTCTGCAGCCGCCATTTTGACGAGACCATGTTCATGACTGTGAACATGAAGAAACTTGTCCCGAATGCTGTTCCGATGCAGATGTTGGATACTAGGCTAAATAAGGACCTAAGTATTAATAGGAGAGAGTGTTTCGCGGAAGAGTTATGCGGGGAACCAAGTGACGAGCTGGTCGCTTGTCGCGCGTGCCTCGCGGCGGACTGCCGGCTGTATGCCATAAGAGGCAGCGGGTTGGAGGACACGCTCGCGGCGCTCACTGGGGCAGCGTTGCCAGCAGAGGACGGTTTCCCGCGTCACCTGTGCGTGTTCTGCATGGCGCGGCTGTCAAAGTGCGCCGCCTtccgtgacagctgtcaccggACCACAGCGCTGCTAAGGACCCTGTTGGAGAAGGGGACGTTAAAAATGAATGACGTTAAAGCTATCGACAGAAATTCGCACGAACTGACTTACAACTTGGCTTGCAATAAAGTATTCGAATTCAGCACTGACCCATTGTTGGAGGTTCCGCctgaaataaaaactgaaaatgaCGAAGGTCCACATGAAGTAACTGCTTTTGCGGACGTAGAATGTAAGGGGAGAAAGGATTCTATAAAGAACGATGAAGATCGTCATTCTTTTGAAGTACCAATAGCGAAGCATGAAGTAACAGAAGTTAAAATAGTTAAATTGAAAACAGAAAATAGTAACGCTCATTCAGAAGCTGATTATATGGATACAGAAGTTAAAAATGATACTAGTGATTATGACACTGATTCCTCAGAGGAAACGCTCGCTGCGGTTAAAAGAGGTAAAAGGAAAAGAGTCAAAGCTGAAAAAGAGAATACAGACACGGAAACGGCTTTTGAGAAGAAGTTTAATTGTAAAACTAAGCTTTTGAGTAAAGAAGAACAGAAACAGGAGGTGGAAGAGAGAAAGAGGAACAACAAGTCGGCGTATAGCTGCGAGCTGTGCGGGAAAGGGTTCAAGAAGGAGAACACTTTGATGACGCACAAGAGCTACCATGACCCGAGCCTGCCGGCGGAGTGTGATGTTTGCCGTCTACGGTTTCGGTCGCGGCGGAGTCTCCTCAAACACCAGGACTGTCACCGCGCCACGTTCACCTGCAACGAGTGCGGTAACGTCAGCCGGAACAgATCGCACGCGAAAGACCACTGCCTCATGCACAAAGGCACGACGTACACGTGCCCGTACTGCCAGATAGTGTACAACCACCAGACCTCTTATTACAACCACATCAGGGTACAGCATCCTGGACAGAACGAGGCGTGCGACGAGTGCGGGGAGACCTTCGCCGCGGGGCGGGGGATGATGCTGCACAAGGCTTTGACGCACAAGCAGaatgtcaAACCAAACGTAGACACCAAATGTACAGTTTGTGATGTCAAGTTTTCGACCGGCGAAGCGTTACAAAGGCACTTGGAAGTGAGCGCGGGCGTGCCGCATGCGGCGTTGTGGCCGTGTGCCGCATGCGGCCACAGCTGTGGCAACGAACAAGCGCTCAAACACCATACGGCAGAACAACATCCGCCAGAACAGCGGTATTGTCAAGAGTGCAACAAGACGTTCAGCAACGGGGCTTCGTTCGCGCTCCACGTGGAGCGCAAGCACCGCAACCAGCGCGCCGTGGAGGCGCCCTTCCGCCCGCGCCCCGGGATCGGCCGCGTGCGCTCCACCGTCTGCGAGATCTGCGGGAAAGTCTACCAGAACCTGACAATGCTGCAGTACCACATGAACGGGCACCTCTCCGTGAAGCCGTTCCAGTGCCCGCACTGCCCCAAGGCTTTCACCCACCAGAGCAACCACAGGcTACATATGCGGGTGCACACAGGCGAGCGGCCCTACCAGTGTGAGCAATGCCCACTAGCCTTCTCTAGGCGGGGCAACTTCACAAAACACATGAAAAACgTGCATTTGCGGGTGCAGGTGAAGTGTGACACGTGCGGCAAGATGGTGGGCGCCGGCTCGCTCGCGTCGCACGTGCGCGCCGTGCACCTGCGCCAGCCGTACGTGCGCCGGAAACGGAACCGGAACCCGGAGAAGATGTTGCTCGGCACGCAGTCGTAA
Protein Sequence: MFTNSEGIKKLMPNAVPKPFLDSSSNDEPSPNMRECSDEAGSSEELVACRVCLAADGRLYAISGSGLEDTLAALTEAVLPAEDTFPRHLCVFCMAKLSKCAAFRDSCHRSTALLQTLLEKGPLKMNVIKAYNRKLRQQTNNLTRAKVFQFGTDSFTEITPVIKTETSERLDEEAKCAETEHIDSEIIKKDASDVNVCALELPIDKRERPRRNFKTRAKQIMEYIKVELGIDDNADSELDDSLEPEVNDSSDADSDTSEETLAAVKKRKRRKVTLVKENTAKQPKKHEILNTEDKHPTDVDTDTPEAATKLRKRVAIKSANTKSVIEKKNNRKTKPLSAEEQKEKVVKRKKNNKSVYSCDICEKEYKSESNLKMHKSRHDPNISKETFATMKSDAYLEFGKQYNFEIKLLTKEEQKQRIQERLKSRTTYGCDVCGKDHCKESTLIAHKTSYHNPSLPFECDVCFYRFRIRQELRKHQLEDRHRLILTCNECKHVTRNRTYAKEHFLMHRGKTFACPYCELKYDRQSSYYGHIRQQHPGENEACDQCGETFAGKVGLLVHKRMQHKNDKPNGEFKCKDCDVKFSSDEALQRHLELGAGVPHAALWPCAACGESCGSEEALKHHTAEQHSSEQRYCQKCNKTFSDAASFALHVERKHRNRRASHVRLRDRFARVVCELCGKVFTCLATLQYHMNAHLGLTPYQCQHCPKAFSHKAKLQLHMRIHTGEKPYKCEQCPQAFSARGNFTRHMKNVHLRVQVECDRCGKTMGAGSLAAHVRAVHMNQRQVRRKRDRASKTQARVAESVPSSLILRAQWVLALGPLRDDSYVCSRHFDETMFMTVNMKKLVPNAVPMQMLDTRLNKDLSINRRECFAEELCGEPSDELVACRACLAADCRLYAIRGSGLEDTLAALTGAALPAEDGFPRHLCVFCMARLSKCAAFRDSCHRTTALLRTLLEKGTLKMNDVKAIDRNSHELTYNLACNKVFEFSTDPLLEVPPEIKTENDEGPHEVTAFADVECKGRKDSIKNDEDRHSFEVPIAKHEVTEVKIVKLKTENSNAHSEADYMDTEVKNDTSDYDTDSSEETLAAVKRGKRKRVKAEKENTDTETAFEKKFNCKTKLLSKEEQKQEVEERKRNNKSAYSCELCGKGFKKENTLMTHKSYHDPSLPAECDVCRLRFRSRRSLLKHQDCHRATFTCNECGNVSRNRSHAKDHCLMHKGTTYTCPYCQIVYNHQTSYYNHIRVQHPGQNEACDECGETFAAGRGMMLHKALTHKQNVKPNVDTKCTVCDVKFSTGEALQRHLEVSAGVPHAALWPCAACGHSCGNEQALKHHTAEQHPPEQRYCQECNKTFSNGASFALHVERKHRNQRAVEAPFRPRPGIGRVRSTVCEICGKVYQNLTMLQYHMNGHLSVKPFQCPHCPKAFTHQSNHRLHMRVHTGERPYQCEQCPLAFSRRGNFTKHMKNVHLRVQVKCDTCGKMVGAGSLASHVRAVHLRQPYVRRKRNRNPEKMLLGTQS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -