Basic Information

Insect: Choristoneura rosaceana
Gene Symbol: -
Assembly: GCA_037349165.1
Location: JAZBNJ010000017.1:1422404-1427208[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 1.1e-07 9e-06 26.8 0.9 1 23 169 191 169 191 0.98

2 14 0.00049 0.039 15.3 4.7 2 23 198 219 197 220 0.95

3 14 0.0014 0.11 13.9 0.6 1 23 226 248 226 248 0.98

4 14 0.00013 0.01 17.2 2.8 1 23 253 275 253 275 0.99

5 14 1.4e-05 0.0011 20.2 2.8 1 23 281 303 281 303 0.99

6 14 9.1e-07 7.3e-05 23.9 1.1 1 23 309 332 309 332 0.95

7 14 2.5e-05 0.002 19.4 4.2 1 23 338 360 338 360 0.98

8 14 1.2e-05 0.00096 20.4 0.6 1 23 366 388 366 388 0.98

9 14 0.0005 0.04 15.3 1.5 1 23 394 416 394 416 0.98

10 14 2.7e-07 2.2e-05 25.6 0.4 1 23 422 444 422 444 0.97

11 14 1.2e-06 9.7e-05 23.5 0.8 1 23 450 472 450 472 0.98

12 14 0.086 6.9 8.3 3.0 1 23 478 497 478 497 0.95

13 14 2.1e-06 0.00017 22.8 0.8 1 23 503 525 503 525 0.98

14 14 0.00019 0.015 16.7 1.9 1 23 530 552 530 552 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	1.1e-07	9e-06	26.8	0.9	1	23	169	191	169	191	0.98
2	14	0.00049	0.039	15.3	4.7	2	23	198	219	197	220	0.95
3	14	0.0014	0.11	13.9	0.6	1	23	226	248	226	248	0.98
4	14	0.00013	0.01	17.2	2.8	1	23	253	275	253	275	0.99
5	14	1.4e-05	0.0011	20.2	2.8	1	23	281	303	281	303	0.99
6	14	9.1e-07	7.3e-05	23.9	1.1	1	23	309	332	309	332	0.95
7	14	2.5e-05	0.002	19.4	4.2	1	23	338	360	338	360	0.98
8	14	1.2e-05	0.00096	20.4	0.6	1	23	366	388	366	388	0.98
9	14	0.0005	0.04	15.3	1.5	1	23	394	416	394	416	0.98
10	14	2.7e-07	2.2e-05	25.6	0.4	1	23	422	444	422	444	0.97
11	14	1.2e-06	9.7e-05	23.5	0.8	1	23	450	472	450	472	0.98
12	14	0.086	6.9	8.3	3.0	1	23	478	497	478	497	0.95
13	14	2.1e-06	0.00017	22.8	0.8	1	23	503	525	503	525	0.98
14	14	0.00019	0.015	16.7	1.9	1	23	530	552	530	552	0.97

Sequence Information

Coding Sequence: ATGAGTGACTTGTGGAATGAAAAGGGCCTCTGTCGCTGTTGTAATGTCGTGGGAGGTTTCAGAAGTCTCGGGGAATCGTATATATACGAAGGAATTGAAGAAATTTATGCAGATATGTTACGAGATAGTTTGAACATAGTTATAAGGCCTAATTCTCGGTGCACCCAGAGCTACAGCATATGCGAAGGCTGTGTGAAGAGGTTACGTGATGCCACGGTCTTCAAACAACAAGTTTTGGCTTGCGAAAGAACATTAGAGCGTCTTAGCAATAATGTTTCAAAAGATGGTGTCAAATTGGAGTCTGGAATCAAGTTAGAAGATGATTCTTCTTCTAATGAAGACACAGTGACATCCGTGGATCTGTTCATCCAACCTGTAGTGGACTTGGATGACCAGCCCCTCTCCAGCCTCCGGAGACGCAGAGAGGAATCCATCCCTGACGCCGACTGGGCTGCCCCGAAACTCGGTGATGatgGTAAACCACATCAAACAAAAACGAAGAAATTTAGCTGCGAAATATGCCAAAAGAGATTTTCGTACAATGGCTCTCTAGAGGTTCATATGCGTACGCACACGGGCGAAAGAACTATTCAATGCAATTTGTGCAACGAGAAATGCACAAACAACAAAGAACTGAACCGACATATAACCTCACACCATTCAGATGGGGATAAATTCCCATGCACAATGTGCCCCGAAACATTCCTAAAAGCCagactattaaaaaaacatctaacaACACATTTCGAACAGAAATTCACCTGTAGCTACTGCAACAAAGAGTTCTTAAGAAAGAAAGGCTTGAAAGAACATTTAAAAACTCACACAGGTGAGAAAAAGTACACTTGTAGCGTTTGCAGCAAATCTTTTGGTCACAATCAGACTTTGAAGTCCCATATACTAACTCACACGGGTGAGAAACCCTACGTTTGTGATGTATGCGGCCGTAGGTTTCCACAAAGAACGCATTTGAAACGACATATCTTCATAATTCACACAGGCGTTAAACCTTATAGCTGCCATGTGTGTAAGAAACAGTTTTCAAGCAAAAGTTACTTATCCGTTCACGAACGACAGCACACGGGCGAGAAACCTTTCATTTGTGAAGTGTGCAACAAGAATTTCACAGCTTACACAACTCTCAAAGTCCACATGCGTGTGCACACAGGTTTAAAACCTTACAGCTGCGGCTTTTGCAATAGGAAATTTGCTCAAATGGCCAGTTTTAAGCTTCACGAACGCACACACACTGGCGAGAAACCCTTCGCTTGTAAAGTGTGTAAGAAACCGTTCTCAGACAACGGCTATTTGAAAATACACATGCGGgttcacacaggcgagaaaccgtatagttgcgatgtgtgtaaaCGCGCTTTTAGAGAAACTGGGCAGTTGAAACGACATATGCGTGTACATACTGGCATAAAACCGTATACatgtaaaatatgtaataaaCAAATAGGTAATTTATCCAAGCATATGCGGGTGCATTCGGACGAGAGACCGTTTAATTGTAACGTGTGTAATAAACAGTTTTCTATCAATGGTAATTTGAAGTTGCATATGAGGATACACTCGGGTGAGAAATATAATTGTGATGTGTGCAGCACACAGTTTGCACAGAGTAGTGGCTTGAGGAGGCATAGATGCGCACATGGTGAAAAGACTGAGTGA
Protein Sequence: MSDLWNEKGLCRCCNVVGGFRSLGESYIYEGIEEIYADMLRDSLNIVIRPNSRCTQSYSICEGCVKRLRDATVFKQQVLACERTLERLSNNVSKDGVKLESGIKLEDDSSSNEDTVTSVDLFIQPVVDLDDQPLSSLRRRREESIPDADWAAPKLGDDGKPHQTKTKKFSCEICQKRFSYNGSLEVHMRTHTGERTIQCNLCNEKCTNNKELNRHITSHHSDGDKFPCTMCPETFLKARLLKKHLTTHFEQKFTCSYCNKEFLRKKGLKEHLKTHTGEKKYTCSVCSKSFGHNQTLKSHILTHTGEKPYVCDVCGRRFPQRTHLKRHIFIIHTGVKPYSCHVCKKQFSSKSYLSVHERQHTGEKPFICEVCNKNFTAYTTLKVHMRVHTGLKPYSCGFCNRKFAQMASFKLHERTHTGEKPFACKVCKKPFSDNGYLKIHMRVHTGEKPYSCDVCKRAFRETGQLKRHMRVHTGIKPYTCKICNKQIGNLSKHMRVHSDERPFNCNVCNKQFSINGNLKLHMRIHSGEKYNCDVCSTQFAQSSGLRRHRCAHGEKTE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00462601;
90% Identity: -
80% Identity: -