Cros029689.1
Basic Information
- Insect
- Choristoneura rosaceana
- Gene Symbol
- -
- Assembly
- GCA_037349165.1
- Location
- JAZBNJ010000047.1:205234-211484[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.00013 0.01 17.2 3.3 1 23 687 709 687 709 0.97 2 18 0.00087 0.069 14.6 1.3 1 23 729 751 729 751 0.98 3 18 1.4e-05 0.0011 20.2 0.6 1 23 774 796 774 796 0.98 4 18 4.8 3.9e+02 2.8 0.2 3 21 804 822 802 823 0.89 5 18 0.23 18 7.0 0.4 1 21 897 917 897 918 0.94 6 18 0.00011 0.0085 17.4 1.5 1 23 924 946 924 946 0.98 7 18 0.0014 0.11 13.9 2.5 1 23 952 975 952 975 0.98 8 18 5.2e-06 0.00042 21.5 4.6 1 23 981 1003 981 1003 0.98 9 18 0.37 29 6.3 3.5 1 23 1012 1034 1012 1034 0.91 10 18 0.001 0.08 14.4 0.6 1 23 1040 1062 1040 1062 0.98 11 18 0.00026 0.021 16.2 0.6 1 23 1068 1090 1068 1090 0.99 12 18 0.00017 0.014 16.8 2.1 1 23 1096 1118 1096 1118 0.98 13 18 4.6e-06 0.00037 21.7 3.9 1 23 1124 1146 1124 1146 0.98 14 18 4.3e-07 3.5e-05 24.9 2.5 1 23 1152 1174 1152 1174 0.99 15 18 4.8e-06 0.00039 21.7 1.5 1 23 1180 1202 1180 1202 0.98 16 18 1.9e-06 0.00016 22.9 3.7 1 23 1208 1230 1208 1230 0.99 17 18 0.00015 0.012 17.0 1.9 1 23 1237 1259 1237 1259 0.97 18 18 0.0016 0.13 13.7 0.1 1 23 1265 1287 1265 1287 0.98
Sequence Information
- Coding Sequence
- ATGGCAAtggatttagtgaaagaggaaGCCGCGTGGGAGGCAGAGTATGTGGAGGCTCTTTGGGAGGCATTGTATGCTGTTCATCATCAAGCAAAGTCGCAGGCGACAGATGTAGCATCACCAGTTGCAAGAGCATGTGCTGCTAACACGAGTGATCCGCAACCCAAGACGGAGACACCAGACCCTGGGGTTGTTTCTACCAGTCACAGGACCCTTAAAGGTATCTCTACTAATATACCGACCAAGACAAAACCTGTACAGGGCGTTCAAGACATTCCAACCAGCAATGAAGAAGCTGGTGTTGCTAATGCAGCCCGAACACCAGAACCTGTCCCTAATAATGTTTCTACTAACCAAGACTCCAAGAGTAAGCGTAGAAATGGTCATTATACAGAAGTAACACAAAACCCTAGGGGTGTTTCTAACACTCATTCTGTCCTGGAAGACGTAACTAATCAAATATGCAAGACAGAACCAGTTTGGGCCCCTCAAGAAGTTCCTAACAGTCTTGAAGATGCTATTGTTACTAATGTGGTCAGGACACCAGCACCAACTGCTAATGTCTCTACCAACCAACCTTCCCTTGAAGACTCTAATAGTAATAATCGTAATGCAGCAGTAACAAGGAACCCTAACAACCTTTCTAGCCTGGAAGAGGCCAGTAATATAATTTGCAAGCCAGAACCAGTTTGGACCCCTCAAGACGTTCCTAACAGTCCTGAAGATGCTATTGTTACTAATGTGGTCAGGACACCATCATCAACTTATGTCCCTACAAACCAACCTTCCCTTGAAGACTCTAGTAGTAATAATGCTATTGCAGCAGTgacacggaaccctaacaacTTTTTTAACACTCATTCTAGCCTGGAAGAGGCCACTAATAAAAAATGCAAGGCAGAACCAGTTTGGGCCCCTCAAGACGTTCCTAACAGTCCTGAAGATGCTATTGTTACTAATGTGGTCAGAACACCAGCACCAACTGCTGATGTCTCTATCAACCAACCATCCCTTGAAGACTCTAATAGTAATAATCGTAATGCAGCAGTAACAAGGAACCCTAACAACACTTCTAGCCTGGAAGAGGCCACTAATAAAATTTGCAAGCCAGAACCAGTTTGGGCCCCTCAAGATGTTCCTAACAGTCCTGAAGGTGCTATTGTTACTAATGTGGTCAGGACACCAGCACCAACTGATGTCTCTACAAACCAACCTTCCCTTGATGACTCTAGTAGTAATAATCCTAATGCAGCAGTAacacggaaccctaacaacTTTTTTAATACTCATCCTAGCATGCTTGAGGCcagtaataaaatatgtaaggCAGAATCAGTTTGGGCCCCTCAAGACGTTCCTAACAGTCCTAAAGATGCTATTGTTACTAATGTGGCCAGGACACCAGCACCAACTGATGTCTCTACAAACCAACCTTCCCTTAAAgactctaataataataatcgtaatGCAGCAGTAACAAGGAACCCTAACAACCTTTCTAGCCTGGAAGAGGCCGCTAATATAATTTGCAAGACAGAACCAGTTTGGGTTGAAGACATTTCTAATGGCCTTGAAGATGATAGTGTTTCCGATATTTTCAGGACACCAGCATCTCCTGCTGATGTCTCTACTACACATAACTATACTATATATAACACAGACTTAGCACGAAGCTCTGCTAAAGTCCCTTCTAGcgttgaagagtctagtaataaAATGTGCAAGGATTTAGGAATCGTTTCTTTTAATCTTGAAGACACCAGTAATAATGTGCCTAATAAAGAAGTAGTACAGAACGCCGATGTTTCTCTCACTAATTCTGATGATGGAGATGCTGATGTTAATAAAACAGCCAGGACGGATTGTAAACCTGAAGGCATTGCTGCTAGTCTTCAAGACCCCAGTTTCAGAAAAACGTCCAGTGATGCTCCGAAGGTTTCTGAGGTATCCCGCCTTCAAACACCTGATGTTTCTACTGGTACTGCAGTTCCCAAAAGCGAACTAATCTCGCTCACACCATGCTATGTGAAGTTAGAACATGTTTCATGTAAAAAAGCGTTCATATGCCAGATATGTCAAAGGTTTTTTAGTTACAAACAACACTTAATGAACCATATCCTTTCCCATACGCAGGATGAAATAAATACcatcaaaattgaaaaaaaagtaaagagaAAAGGGAAATTTGTCTGCCATATTTGCGGCAATGGGGTTAAATCAAAACAATCTATGACTAGGCATTTAAAGATCCATGAAAGGGATCCATTCCGTGAGCAAATGAATAGAAAAACTCCTAAAGATGTTATTACAAAGATTTATTATAATTGTGATTATTGCGGATTGTCGACCGTGAGGAAATATGGTTTAATAAGGCATATCAAAAGGCATGCAAAGGAACAGGCCATAGCCTGTGAAATTTGCCATCAGCAGTTCCAAGCCACATGGGAGTATGTTGATCACATGAAACATAAAACTTGTCAGCCATACAAATCATCGAGTGAACGGACCAACAAGAATAACTTACAAAATCAAATGGTAAAGCCCTGCTATGTAAGTCTTGAACGAATTAATATTGGAAATAAAGTGAAGACaacgaatataaaaattatagatgaatttaaaagttttaatagTGATAGTGAAGATTTATTGGATGATAATCAAGCATTTGAGACTGATGAAGAAACGTACTACTGCGGGGTTTGCGAAGAACAGTTTGATACCTTGGCCTCATTAGGTGATCATATCTGTCATCGCACAAAAAAACCATTCTCGTGTGATATTTGCAAGAAAAAGTTCAGATTCCAGAATAGCTTGGTCGAACACGTTCGACTGCACACGGGCGAGAAACCTTATATCTGTGATGTGTGCAAGAAACAGTTTCGGCTAAAGCATAAGATGAGTATACATATTAGGACAGTGCATCTAGGCGAGCAGGCCTTCTCCTGCAAGGTTTGCAAGAAAAAGTTCCGTAGATCCGAGACTTTACGGAAGCATGTTCGAAAACACACAGGGGAGAAGGAGAAGAAGCTATATTCATGCAAAGTGTGCAAGAAAAGGTTCAGGTTTGAGCGGGAGTGTGTCGAACACGGCCGAGTGCACACGGGCGAGAAACCTTTCCGCTGTACATTCTGCAACATGAGCTTCAGGGTGGAAGTCGCTCTGCGGATCCACAGTCGGGTGCACACGGGCGAGAAACCGTACACCTGTGACGTGTGCAAGCGATCGTTCCGCATCTGGCAGACGCTGGACGCTCACAAACGCGTGCACACCGGTGAGAAACCGTTTTCTTGCGATGTTTGTAACAAACAGTTCAGGCGGTTTGACACTTTATACATCCATAAGCGGATTCACACAGGGGAGAAGCCTTATGCTTGCGAGTTCTGCCCGAAGCGTTTTACACAGCGCGCGCATTTAAAGACCCATCGGAGAACGCACACTGGCGAGAAACCTTACAGCTGTTCTGTGTGCAACAAGAGCTTTATAGACAATTCTCACCTGAGAAACCATGCCCGGACCCACAGCGCGGAAAGGCCTTATCCTTGCAATTTATGCGAGAAAACTTTCAAAAATGCACAGGATCTAAAAGTCCACCATCGAATACACACAGGACAGAAACCGTATGAGTGCAAAGTGTGTAAGAAAAAGTGCACGCAAGCGTCTAATTTATGGACTCACATGAAGACGCATGGGAAGAAGAGCTGGCCGTTCAGTTGTAATGTTTGTGAGAAAAAGTTTCAAAGGCGGCAGAGTTTGAATCAGCATCTGATGCTGCACGATGCTCACACCCCGTTTATGTGTGATGTGTGCGGGGCGCAGTTTTCCAGCAGCACTGTCTTGAGTGTTCATGCTCGCAGCCACTACGGTGGTGAGTGA
- Protein Sequence
- MAMDLVKEEAAWEAEYVEALWEALYAVHHQAKSQATDVASPVARACAANTSDPQPKTETPDPGVVSTSHRTLKGISTNIPTKTKPVQGVQDIPTSNEEAGVANAARTPEPVPNNVSTNQDSKSKRRNGHYTEVTQNPRGVSNTHSVLEDVTNQICKTEPVWAPQEVPNSLEDAIVTNVVRTPAPTANVSTNQPSLEDSNSNNRNAAVTRNPNNLSSLEEASNIICKPEPVWTPQDVPNSPEDAIVTNVVRTPSSTYVPTNQPSLEDSSSNNAIAAVTRNPNNFFNTHSSLEEATNKKCKAEPVWAPQDVPNSPEDAIVTNVVRTPAPTADVSINQPSLEDSNSNNRNAAVTRNPNNTSSLEEATNKICKPEPVWAPQDVPNSPEGAIVTNVVRTPAPTDVSTNQPSLDDSSSNNPNAAVTRNPNNFFNTHPSMLEASNKICKAESVWAPQDVPNSPKDAIVTNVARTPAPTDVSTNQPSLKDSNNNNRNAAVTRNPNNLSSLEEAANIICKTEPVWVEDISNGLEDDSVSDIFRTPASPADVSTTHNYTIYNTDLARSSAKVPSSVEESSNKMCKDLGIVSFNLEDTSNNVPNKEVVQNADVSLTNSDDGDADVNKTARTDCKPEGIAASLQDPSFRKTSSDAPKVSEVSRLQTPDVSTGTAVPKSELISLTPCYVKLEHVSCKKAFICQICQRFFSYKQHLMNHILSHTQDEINTIKIEKKVKRKGKFVCHICGNGVKSKQSMTRHLKIHERDPFREQMNRKTPKDVITKIYYNCDYCGLSTVRKYGLIRHIKRHAKEQAIACEICHQQFQATWEYVDHMKHKTCQPYKSSSERTNKNNLQNQMVKPCYVSLERINIGNKVKTTNIKIIDEFKSFNSDSEDLLDDNQAFETDEETYYCGVCEEQFDTLASLGDHICHRTKKPFSCDICKKKFRFQNSLVEHVRLHTGEKPYICDVCKKQFRLKHKMSIHIRTVHLGEQAFSCKVCKKKFRRSETLRKHVRKHTGEKEKKLYSCKVCKKRFRFERECVEHGRVHTGEKPFRCTFCNMSFRVEVALRIHSRVHTGEKPYTCDVCKRSFRIWQTLDAHKRVHTGEKPFSCDVCNKQFRRFDTLYIHKRIHTGEKPYACEFCPKRFTQRAHLKTHRRTHTGEKPYSCSVCNKSFIDNSHLRNHARTHSAERPYPCNLCEKTFKNAQDLKVHHRIHTGQKPYECKVCKKKCTQASNLWTHMKTHGKKSWPFSCNVCEKKFQRRQSLNQHLMLHDAHTPFMCDVCGAQFSSSTVLSVHARSHYGGE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -