Basic Information

Insect: Choristoneura rosaceana
Gene Symbol: -
Assembly: GCA_037349165.1
Location: JAZBNJ010000050.1:818335-824664[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 17 5.9e-06 0.00047 21.4 1.0 1 23 118 140 118 140 0.95

2 17 4.8e-05 0.0039 18.5 3.8 1 23 146 168 146 168 0.98

3 17 9.1e-06 0.00073 20.8 6.4 1 23 174 196 174 196 0.97

4 17 5.7e-06 0.00045 21.4 2.2 1 23 203 225 203 225 0.98

5 17 0.00014 0.011 17.0 1.0 1 23 230 252 230 252 0.99

6 17 0.0037 0.3 12.6 2.7 1 23 258 280 258 280 0.98

7 17 3.7e-05 0.003 18.9 2.5 1 23 286 308 286 308 0.98

8 17 0.00078 0.062 14.7 2.6 1 23 314 336 314 336 0.96

9 17 0.0018 0.15 13.5 3.2 3 23 348 368 346 368 0.97

10 17 4.8e-06 0.00038 21.7 0.5 2 23 373 394 373 394 0.97

11 17 0.00059 0.047 15.1 3.2 1 23 400 422 400 422 0.98

12 17 1.9e-06 0.00015 22.9 1.0 1 23 428 450 428 450 0.98

13 17 0.00039 0.031 15.7 1.4 1 23 458 480 458 480 0.96

14 17 0.00025 0.02 16.2 6.4 1 23 486 508 486 508 0.98

15 17 2.7e-07 2.2e-05 25.6 3.3 1 23 514 536 514 536 0.98

16 17 2.2e-05 0.0017 19.6 0.6 1 23 541 563 541 563 0.99

17 17 0.0027 0.21 13.0 1.9 1 23 569 591 569 591 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	17	5.9e-06	0.00047	21.4	1.0	1	23	118	140	118	140	0.95
2	17	4.8e-05	0.0039	18.5	3.8	1	23	146	168	146	168	0.98
3	17	9.1e-06	0.00073	20.8	6.4	1	23	174	196	174	196	0.97
4	17	5.7e-06	0.00045	21.4	2.2	1	23	203	225	203	225	0.98
5	17	0.00014	0.011	17.0	1.0	1	23	230	252	230	252	0.99
6	17	0.0037	0.3	12.6	2.7	1	23	258	280	258	280	0.98
7	17	3.7e-05	0.003	18.9	2.5	1	23	286	308	286	308	0.98
8	17	0.00078	0.062	14.7	2.6	1	23	314	336	314	336	0.96
9	17	0.0018	0.15	13.5	3.2	3	23	348	368	346	368	0.97
10	17	4.8e-06	0.00038	21.7	0.5	2	23	373	394	373	394	0.97
11	17	0.00059	0.047	15.1	3.2	1	23	400	422	400	422	0.98
12	17	1.9e-06	0.00015	22.9	1.0	1	23	428	450	428	450	0.98
13	17	0.00039	0.031	15.7	1.4	1	23	458	480	458	480	0.96
14	17	0.00025	0.02	16.2	6.4	1	23	486	508	486	508	0.98
15	17	2.7e-07	2.2e-05	25.6	3.3	1	23	514	536	514	536	0.98
16	17	2.2e-05	0.0017	19.6	0.6	1	23	541	563	541	563	0.99
17	17	0.0027	0.21	13.0	1.9	1	23	569	591	569	591	0.98

Sequence Information

Coding Sequence: ATGGCACTAAATTCACTAGAATTTGTTCGCGTAAAGGAGGAACCGAGATGGGAAGACGACGAAAGCGAttccgtaaaagttgacatcGAGGAGGTCAAATTGGAGGATGTGTCCAAGAAGGTCAAAGCTGAGCCGAACCCAGTCAAAGTTGAAGCTGAGGAAAAAGAGTTAAAGAACCGCAATGAAGACGAGCTGCCGATATGCCGTGATATCAAAATAGAGGTGGAAATAGAGCAGAGCGCTGATTCCTCCAATCAAGATCAATTCAACAATCAAGCTCTAAAAGATTTCCAAGAGCCGACTCAAGCCGGAGCTAGTGGCTCGCAGCAGAAGTCTCTGGCCAAATCAGGCTATCCATGCTCCACATGCGACAAACACTTCAAGAGCCCTGCCGATCTAAAACGGCATGAAATACTCCACTCCGGTATAAAACCGTTCACTTGTGAAATATGCCAAAAACAATTTTCACTCAAACATTATTTGACTAAACACGTTAAAGTACATACTGGGATCAAACCACATCATTGCGAACACTGCGACAAAAGTTTCTCCGTCAAAGAGAGTTTGATAAAGCATATGTCGACACATACCGGTGTGGTGAAACGATATCCATGCAAAATGTGTGACAAACAATTCAAAGATAAGAACTACTTGGCACAGCATCAACGATTCCATACAGGGGAGCAGTATACTTGCGAAATATGTAAGAAACAATTCTTATTCAAAAACGGGTTAGCAAGACATATGCGAATACATTCCGGTGATCGACCTTTCTCCTGCAAACTATGCTCCAAACAGTTTAAAGCTATGACTTATTTGATTAGACACAAACGTCTGCATACAGGCCAAAAGGAATTCACTTGTCTGGTGTGCCAAAAGAAATTCTTCTTCAAAGATAGCTTGGACAGGCACATGCGTGTACATACAGGTGAAAAACCTCACAGTTGTGTTATTTGTAGACGACAGTTCTCATTCAAGACCAGCTTAGTACGACATATGGAGTTACATACcagagaaaaaaaagtaataccaGCAATGATATGTGAGATTTGCAACAAAGAATGCAAAGACAGAGTACATTTGGACCAGCATAAACGCATCCATGAAAAAAAGAATTCTTGCCCAATTTGTAATAAGGAGTTTTCTGTCAAAGCAAGCATTTCCAGGCATATGCGGACCCATACCGATGAAAAACCTTTCACTTGCGACCTTTGCTGCAAAACTTTCAAAGATAAAGCGTACCTGGAATCACATATAAAACTTCACACAGGTGAAAAGAAACATAAATGCAAAATATGTGGGAGAGAGTTCGCTTTAAAAGCCAGTTTATCTCGGCACATACGGATCCACACAGAAGGCGAGAAAAAGCCCTTTTCCTGTGACATTTGCCAAAAACGGTTCCGGGTAAAAATCTACATGACTAGACATAGAGCGCTGCACACTAGTGAAAAGCAGTACTCCTGCGATATCTGCCACAAGCAGTTCTCTTTCAAAGCCCACGTCCATCGCCATATGCTGGTACACACCGGAGAAACACCGTATTCTTGCAAAATATGCAGTAAAAGTTTTAGAGACAGATCCAGCTTGCGAAAACACGAACGGCGACATTCAGTGAAACCATACTCCTGTGATATTTGTAAGAAACAGTTCGCTCAACGAGAGGTTTTGGTCACACATATACGGAAGCATGCGGAGGATAAACCGTTTACTTGTGATGTTTGCTGCAAACAATTTAAGAAGCGGGCGGCGCTTGCGGTGCATCGAAGAGTGCACGCTGCTGCAAATGTACCTGCGACTGCAAGCCAGTATTGTATAGAAATTGAACTGGAGCCAAATTATAGGGAAACAATAATCAAGCAGGAGCCCAGTGATTCATCGTAA
Protein Sequence: MALNSLEFVRVKEEPRWEDDESDSVKVDIEEVKLEDVSKKVKAEPNPVKVEAEEKELKNRNEDELPICRDIKIEVEIEQSADSSNQDQFNNQALKDFQEPTQAGASGSQQKSLAKSGYPCSTCDKHFKSPADLKRHEILHSGIKPFTCEICQKQFSLKHYLTKHVKVHTGIKPHHCEHCDKSFSVKESLIKHMSTHTGVVKRYPCKMCDKQFKDKNYLAQHQRFHTGEQYTCEICKKQFLFKNGLARHMRIHSGDRPFSCKLCSKQFKAMTYLIRHKRLHTGQKEFTCLVCQKKFFFKDSLDRHMRVHTGEKPHSCVICRRQFSFKTSLVRHMELHTREKKVIPAMICEICNKECKDRVHLDQHKRIHEKKNSCPICNKEFSVKASISRHMRTHTDEKPFTCDLCCKTFKDKAYLESHIKLHTGEKKHKCKICGREFALKASLSRHIRIHTEGEKKPFSCDICQKRFRVKIYMTRHRALHTSEKQYSCDICHKQFSFKAHVHRHMLVHTGETPYSCKICSKSFRDRSSLRKHERRHSVKPYSCDICKKQFAQREVLVTHIRKHAEDKPFTCDVCCKQFKKRAALAVHRRVHAAANVPATASQYCIEIELEPNYRETIIKQEPSDSS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -