Cros007568.1
Basic Information
- Insect
- Choristoneura rosaceana
- Gene Symbol
- -
- Assembly
- GCA_037349165.1
- Location
- JAZBNJ010000011.1:5178747-5180692[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 9e-08 0.00015 22.3 0.0 5 41 26 61 24 65 0.87 2 2 2.4 4e+03 -1.4 0.0 16 24 150 158 148 159 0.83
Sequence Information
- Coding Sequence
- ATGGGCAAAACTAAAGAAAAACGTGCTAAGGACACTCCTATGAAAAAACGAGAGAAGCCTTACGATGCATCCAGCATTAAAGCTGCCGTAGCTGAAATTACCAATGGCAACACTATATACAAAGCTGCAAAAAAATTCTCGATCCCTTGGAGCACTCTGAAGGCATATCGAGACCGTCATAATCACGATGTTTCTGCCCCAGGGCGGTCAAAAGGCGGGAAACCTTATGTATTGCCCGCAGAAATAGAGATCGCACTCCTGTCCTATATTAATAAAATGCAAGAAATTGGTTTTGGATTAACTGTCAAACAGATATGTCTAGTGGCATATAGATTAGCTGAAAAAGGTAATATTAAACATCCTTTCtccaaaacaaaacaacagGCTGGTTGGTATTGgtggaatttatttaagcagCGGTATAATCTTTCTTTGAGAGTACCTGAGAGTTTGTCCATGAATAGGGCTCAATCTGCGACCAGAGAAGCTGTAAATGATTTCTACAAAATGCTAGATGATCTGTATACAAAGCTAGGTGTTTCAAATCAGCCTAATCGTATCTGGAACTTAGAGGAAACTGGGTTTCAGTTTGTTGTAAAGTCTGGCAAAGTTGTAGCATCAACGGGCAAGACACATGTTTACAAACAAACCTTCGGGGAAAGAGGAACAACAACTACAGTGTTACCTTTTGTCAATGTTGCTGGTGATGCCATACCACCGATGATAATATTCAAGGGTAAAAGATGGGATGACAGGCTTAAAAGCTCAGACTATCCTTGTCTTATTAAGCTGAGTGAAAAGGGCTGGATAAACAATGACCTGTTTTTAGAATTCTTTCAGCACTTTATAGAAAATATCCCATTAGCAAGGGCGCAGCGGTCCCATTTGTATCAAAAACAATCGGAACCACACCCAATTTTGTga
- Protein Sequence
- MGKTKEKRAKDTPMKKREKPYDASSIKAAVAEITNGNTIYKAAKKFSIPWSTLKAYRDRHNHDVSAPGRSKGGKPYVLPAEIEIALLSYINKMQEIGFGLTVKQICLVAYRLAEKGNIKHPFSKTKQQAGWYWWNLFKQRYNLSLRVPESLSMNRAQSATREAVNDFYKMLDDLYTKLGVSNQPNRIWNLEETGFQFVVKSGKVVASTGKTHVYKQTFGERGTTTTVLPFVNVAGDAIPPMIIFKGKRWDDRLKSSDYPCLIKLSEKGWINNDLFLEFFQHFIENIPLARAQRSHLYQKQSEPHPIL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -