Cros017906.1
Basic Information
- Insect
- Choristoneura rosaceana
- Gene Symbol
- -
- Assembly
- GCA_037349165.1
- Location
- JAZBNJ010000025.1:1149710-1151176[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 7.1e-08 0.00012 22.6 0.0 1 36 16 52 16 59 0.90 2 2 8.8 1.5e+04 -3.2 0.1 24 30 368 374 368 374 0.86
Sequence Information
- Coding Sequence
- ATGCCTCAAATATACGTAAAAAAGGGAACTCGAACAGGGCAGGTAGACGAAGAAGCAATGAAATCTGCTATGCAGGAAGTCTTAGACAAAACCTTGTCTATTAGAAAATCTGCTCAAAAATATGGTATCAAACCGACAACACTTGAAACTCGCTTAACAAAGTTCCATAAGCAAACAGTTGCTGAAAACGATGGTACAATTTCAAAGCGTGTGTTTAGCTCGAAATTTACATCGAATCAAGTATTTACGACTGATGAAGAGGCTGCTTTGAACAACTACATCACGGAGTGTTCTAAAATGCACTATGGGTTGACTATTGTTCAGGTGAAGAAACTGGCTTACGAATTCGCCAAAGCGAACAACCTCCGCTATCCACCTAGCTGGGAGCATAACAAAATGGCAGGGAAAGAATGGTTGGACTGTTATCGCAGGCGGAATACCAACTTAAGCCTAAGAAAACTCGAGAGCACCAGTGCAGCGAATTCTTATGGATTTAACATGACATCAGTGAATGATTACTTCGATAATCTAGAAAAGGTTCTGACAAAGTATGAGTTCACAGCAGatagaatttataattttaatgagtCAGGAATATCTACAGTGCTGGAGACGCCAAAGATATTCGTTGAGAAAAACCAAAAACAAATTGGCCAACTCATTTCGGCAGAAAGGGGTGAACTTGTAGCATTTGGAGGAATTATATCAGCAAGTGGTAAAACAATTCCGCCGCTGTTTATTTTTCCGAGAGTGCATTACAAGGATCACTTTATGACGGGTGCTCCAGAAGGCAGCCTAGGAGCGGCGACTAAGAGTGGCTGGATAAATTCGGACATATTTATAGAGGTGCTGAAACATATTCAAAAAAAGTCATGTTGCTCGAAAGATAATCCTATTTTGCTCCTAGGTGACAACCACGAAAGTCATGTCACAATGAAAGCAATAGAATATGCTCGTGATAGCGGCATTGTTTATCTATCGTTCCCACCTCACACTAACCATCGTCTCCAACCATTGGATGTGGGTGTATTCGGACCCTTCAACGCCAAACTGAAGATATCATTTCATGATTGGCATGTTAACAATCCGGGTAAAACACTGAATATATACAATATTCCGAAACTTGCCAAAATTGCCTACTTTGAGTCCTTCAATGGCAAAAATATTACAAGTGCTTTTGAAAAGACGGGTATATGGCCATTCAACAAACTGGCTTTCAGTGAAGAAGATTTTGCACCCGTTCAAGTTTACACCACTGTTCCACCAGAACAATCAGATCTTACTCAACATAATATACCTCCAAGCGTAGCGCTTGCATCAACATCTTTGCTTTCACAGCCATCAACATCAGGTGCTATACTTCCAAGCGTAGCACCTGCATCGCCTTCTTTGCTGCCACAGCCATCTATATCAGTTGCTATACCTCCAACCGTAACGCCGCCTGCATCAACGTCTTTGCTGTCATAG
- Protein Sequence
- MPQIYVKKGTRTGQVDEEAMKSAMQEVLDKTLSIRKSAQKYGIKPTTLETRLTKFHKQTVAENDGTISKRVFSSKFTSNQVFTTDEEAALNNYITECSKMHYGLTIVQVKKLAYEFAKANNLRYPPSWEHNKMAGKEWLDCYRRRNTNLSLRKLESTSAANSYGFNMTSVNDYFDNLEKVLTKYEFTADRIYNFNESGISTVLETPKIFVEKNQKQIGQLISAERGELVAFGGIISASGKTIPPLFIFPRVHYKDHFMTGAPEGSLGAATKSGWINSDIFIEVLKHIQKKSCCSKDNPILLLGDNHESHVTMKAIEYARDSGIVYLSFPPHTNHRLQPLDVGVFGPFNAKLKISFHDWHVNNPGKTLNIYNIPKLAKIAYFESFNGKNITSAFEKTGIWPFNKLAFSEEDFAPVQVYTTVPPEQSDLTQHNIPPSVALASTSLLSQPSTSGAILPSVAPASPSLLPQPSISVAIPPTVTPPASTSLLS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -