Basic Information

Insect: Choristoneura rosaceana
Gene Symbol: -
Assembly: GCA_037349165.1
Location: JAZBNJ010000051.1:507001-510114[+]

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 1 2e-08 3.4e-05 24.4 0.0 1 39 16 54 16 60 0.88

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	1	2e-08	3.4e-05	24.4	0.0	1	39	16	54	16	60	0.88

Sequence Information

Coding Sequence: ATGTCGTTGGAGTCCAagaaaactagaaaaaaaaccgAACCATACTCCGAAGATTCCTTAAAAAAAGCTCTTTACGAAATCCGTGAAGATAAGGCATCCGTCAGAAAAACATGTCATAAATATGGGATTCCTAAATCGACGGTACTGGATAGAATACACGGTAGATCAACGGATGCTAAAAAGAAACGTGGCCCGGACTCTGCTTTAGGGGAAGATGGTGAAAAAAAAGTTGTCGAATGGGTGATGAATCTTGCCAAATGCGGATTTCCTGTCAAAAAACAGGAACTCTTGGACTCGGTGCAAAAGATTCTTAATGATTCAGGTTCGACCAAATTTAAAGACAATCGACCAGGGCAAACGTGGTATTTGAATTTCCTTAAAAGACATCCCGAAATATCAAGTCGATCTGCAGAAGGAATTAACAAAGCACGCGCACTGGTCACAGAAGAGTCCATAAGGCTCTGGTTTAAAGGTCTCGAGACCTATTTGGAAGACATAAATCAAAGAGACGTTCTAAACCGGCCTGCTAGCATTTTTAATGGAGATGAAAGTGGGTTTGCGCTGTGTCCAAAGACCGGGAAGGTTTTAGGACCCAGAGGTTTTCGTAACCTATACCAAATAAAACAAGGAAATGAAAAAGACAATTTAACTGTTCTTGTAACATTCAATGCAAACGGTGATCTGTGCCCGCCGTGTGTAGTCTTTCCATATATTCGGCCACCAAGGGCCGTAGTTGAAAGCATGCCAGCTGATTGGTGTTTGGGCCGATCAGAGTCAGGATGGATGAGGGGTGATGTCTTCTTTGAATACGTCACTAATGATTTTAACAACTGGGTTGAACGTAATAATATTCAAAAACCTGTGCTCTTGTTAGTTGACGGCCACAAATCTCACATGTCGTTAATGCTCAGTACAGTATGTGAGCAAATGCAAATAATATTATACGCTCTGCCGCCTAACACTACCCATATCTTACAGCCTGCTGATGTCAGTGTGTTCGCTCCTCTAAAGACAAGCTGGAAGAAAACAGTGCGAACATTTTTAACGAAGCCAGAAAACTTGAATACCTCGGTTACTAAAACCAATTTTTGCAAGCTGTTTGCAGAGACTTTGCAAGATACAAACCTACCTTCATGTATCAAAAACGGATTTAGACGATGTGGTCTGTACCCATTTGACCCAAACGCACCCGATTATACAAAATGTGTTCTCAATACTTTAGAGAACATGAATTCGAGACAGatccattcaaataaaaatataagcaGATCAGACATAGCAGCCACCAAAAAAGtactgaagaaaataaaaccagcactggtagataaaaaaataaacttcaagGCAATAATGAAAGAAGTAAGCCTACTCAAAAAATCCCTACCAGTTGAAACAAACACTACTGGCGTGTCCATAGATACGGAATCTGATGGTACAAATATCGATTCATCACACGATACCCTGACATTACCATCAAATTCAAATAGTGTCAATATTTCAGGATCTGTAGACATATCTGCCAGAATGCAGCAGATTCCGCATGATTTTCAACTGGTTGCTAATATGGAGAAAGCCGTTGAACCACCAGTTCATATATGTGAAGACGTTAACTCCATTTCGTCTTTACATTTAACAGGGAGTTACCTAGAAGTTGGTTCAATTGtgtcacttgatgacattgtagtTATGCCTCTAAATACCTCTGAAATAGAAGTCAATTCTTTAAATCAAACGTTTGTACCCGAAGAGCTTTCCCAGCTAAGATCAGCACAATTCCTAGCTTCCACACCTGAATCTTCAAATCCAATCACAGTACCTGAAAAACTTACCCAGCTAAAACCAGCGGCAGACCCAGCTTCAACACCTGACTCTTCAAATCCAATCACAGTACCTGAAAAACTTACCCAGCTAAAACCAGCGGCAGACCCAGCTTCAACACCTGACTCTTCAAATCCAATCACAGTACCTGAAAAACTTACCCAGCTAAAACCAGCGGCAGACCCAGCTTCAACCCCTGACTCTTCAAATCCAATCACAGTACCTGTACCTGAAAAACTTACCCAGCTAAAACCAGCGGCAGACCCAGCTTCAACACCTGAATCTTCAAATCCAATCACAGTACCTGAAAAACTTACCCAGCTAAAACCAGCGGCAGACCCAGCTTCAACACCTGACTCTTCAAATCCAGTAATTATTCGCGAAAAACTTACCCAGCTAGAAACAGCGGCAGGCCCAGCTTCAACACCCGACGCGTCAAATCCAGTGATAATACTTGAAAAACTTACCCAGCTAGAAACAGCGACAGACCCAGCTTCAATATCCGATTCTTTAAATCCAGTGATAATTCCTGATAGACTTACCCAGATTGAAACAGCGGCAGTCCCAGCTTCAACATCCGATTCTTTAAATCCAGTGACAATTCCTGAAAAACTTACCCAGCTTGAAACAGCGCCAGACCCAGCTACAACACCAAACTCTTCAAATCCAGTTATAATTTCTGAAAAACATACCAAACTTAAAACAGCAAAAGTTCTTCCTTCGACATCTATTATATCTCCCAATCTAAATATCAGGCAAACAGAAACCAAGTCTTTGAATGACCCGTTTGATCGCCACTTATATTTGCCGACTCCACCTGAAAAAGTAGTAAAACCTACTAAGCAAAAAATTCCCTCTGCTATTTCTTCTGCAGCTTGGAGAGAGCATTACGAGGTGAAAGACCGTGCAAAAAACCTAAAACAagaacaaacaagaaaaagaaaaatagaaagaaGTGAAAAACAAGAAcagtcaaaaatattaaaagaaagTAATGGCAAGCAAAAGGTAGGATCCAAAATACAATCAAGACGCAAGAACTCACAAGATATGGATTACCGACCTCGAACCCGCGGAGTTCGTAAAGAAAATTATAGTGCTCCCTCTGCTGCAGCGGGTAAAATATCATGCTCGGAATGTGAGGGTGATTTAATATCCGATGTTGAAGAGGACGAAGAGAAAAATATTGGGTGTGATGTCTGTCCTCGATGGTACCATCTAAAATGCACATCATTTGTAGGTCAGAACTATCTCAATATTAAAGATAAACCCTATAAATGCAACATGTGTATCTAG
Protein Sequence: MSLESKKTRKKTEPYSEDSLKKALYEIREDKASVRKTCHKYGIPKSTVLDRIHGRSTDAKKKRGPDSALGEDGEKKVVEWVMNLAKCGFPVKKQELLDSVQKILNDSGSTKFKDNRPGQTWYLNFLKRHPEISSRSAEGINKARALVTEESIRLWFKGLETYLEDINQRDVLNRPASIFNGDESGFALCPKTGKVLGPRGFRNLYQIKQGNEKDNLTVLVTFNANGDLCPPCVVFPYIRPPRAVVESMPADWCLGRSESGWMRGDVFFEYVTNDFNNWVERNNIQKPVLLLVDGHKSHMSLMLSTVCEQMQIILYALPPNTTHILQPADVSVFAPLKTSWKKTVRTFLTKPENLNTSVTKTNFCKLFAETLQDTNLPSCIKNGFRRCGLYPFDPNAPDYTKCVLNTLENMNSRQIHSNKNISRSDIAATKKVLKKIKPALVDKKINFKAIMKEVSLLKKSLPVETNTTGVSIDTESDGTNIDSSHDTLTLPSNSNSVNISGSVDISARMQQIPHDFQLVANMEKAVEPPVHICEDVNSISSLHLTGSYLEVGSIVSLDDIVVMPLNTSEIEVNSLNQTFVPEELSQLRSAQFLASTPESSNPITVPEKLTQLKPAADPASTPDSSNPITVPEKLTQLKPAADPASTPDSSNPITVPEKLTQLKPAADPASTPDSSNPITVPVPEKLTQLKPAADPASTPESSNPITVPEKLTQLKPAADPASTPDSSNPVIIREKLTQLETAAGPASTPDASNPVIILEKLTQLETATDPASISDSLNPVIIPDRLTQIETAAVPASTSDSLNPVTIPEKLTQLETAPDPATTPNSSNPVIISEKHTKLKTAKVLPSTSIISPNLNIRQTETKSLNDPFDRHLYLPTPPEKVVKPTKQKIPSAISSAAWREHYEVKDRAKNLKQEQTRKRKIERSEKQEQSKILKESNGKQKVGSKIQSRRKNSQDMDYRPRTRGVRKENYSAPSAAAGKISCSECEGDLISDVEEDEEKNIGCDVCPRWYHLKCTSFVGQNYLNIKDKPYKCNMCI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -